Wall clock time and date at job start Sat Apr 11 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53007 * 109.47010 * 2 1 4 4 C 1.53003 * 109.46865 * 180.02562 * 3 2 1 5 5 H 1.09003 * 109.50689 * 304.89193 * 4 3 2 6 6 C 1.52876 * 109.62107 * 184.90447 * 4 3 2 7 7 N 1.47151 * 108.60565 * 187.89297 * 6 4 3 8 8 S 1.65601 * 120.98235 * 230.49912 * 7 6 4 9 9 O 1.42102 * 106.40349 * 156.17902 * 8 7 6 10 10 O 1.42102 * 106.40249 * 23.26240 * 8 7 6 11 11 C 1.76202 * 107.21989 * 269.72022 * 8 7 6 12 12 C 1.38650 * 119.87673 * 270.01995 * 11 8 7 13 13 C 1.38613 * 120.50171 * 179.97438 * 12 11 8 14 14 C 1.37640 * 120.24888 * 359.76584 * 13 12 11 15 15 C 1.40699 * 119.74193 * 0.49277 * 14 13 12 16 16 C 1.41392 * 120.24263 * 179.76708 * 15 14 13 17 17 H 1.08001 * 119.99891 * 204.87276 * 16 15 14 18 18 C 1.39947 * 120.00461 * 24.85974 * 16 15 14 19 19 N 1.30824 * 119.99745 * 17.44317 * 18 16 15 20 20 Si 1.86794 * 120.00213 * 197.43543 * 18 16 15 21 21 H 1.48494 * 109.47363 * 265.18569 * 20 18 16 22 22 H 1.48501 * 109.46977 * 145.18546 * 20 18 16 23 23 H 1.48501 * 109.47079 * 25.19166 * 20 18 16 24 24 C 1.37600 * 119.87523 * 90.00179 * 11 8 7 25 25 C 1.47144 * 118.03602 * 50.23053 * 7 6 4 26 26 C 1.53293 * 108.38630 * 309.71226 * 25 7 6 27 27 O 1.42960 * 109.51584 * 64.99770 * 4 3 2 28 28 H 1.09002 * 109.47070 * 300.00399 * 1 2 3 29 29 H 1.09002 * 109.47087 * 60.00243 * 1 2 3 30 30 H 1.09002 * 109.46965 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47095 * 240.00157 * 2 1 3 32 32 H 1.09002 * 109.47087 * 119.99757 * 2 1 3 33 33 H 1.08990 * 109.46905 * 59.99728 * 3 2 1 34 34 H 1.09002 * 109.46997 * 299.99812 * 3 2 1 35 35 H 1.09004 * 109.61666 * 68.07413 * 6 4 3 36 36 H 1.09002 * 109.52793 * 307.66023 * 6 4 3 37 37 H 1.08004 * 119.74915 * 0.02562 * 12 11 8 38 38 H 1.08002 * 119.87890 * 180.02562 * 13 12 11 39 39 H 1.07997 * 120.12848 * 180.27745 * 14 13 12 40 40 H 0.96993 * 120.00351 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.12557 * 0.02562 * 24 11 8 42 42 H 1.09006 * 109.68431 * 69.43602 * 25 7 6 43 43 H 1.09002 * 109.68383 * 189.99125 * 25 7 6 44 44 H 1.08992 * 109.51685 * 172.22461 * 26 25 7 45 45 H 1.09003 * 109.51606 * 292.33271 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4425 -0.0006 5 1 3.9343 0.8547 0.8419 6 6 4.0834 2.8772 0.1225 7 7 5.5422 2.8720 -0.0708 8 16 6.5481 3.6211 1.0106 9 8 7.8157 2.9918 0.8820 10 8 5.8363 3.6912 2.2385 11 6 6.7593 5.2822 0.4623 12 6 7.7939 5.5968 -0.4054 13 6 7.9717 6.8992 -0.8453 14 6 7.1179 7.8948 -0.4278 15 6 6.0679 7.5882 0.4570 16 6 5.1875 8.6035 0.8965 17 1 4.6628 8.4946 1.8342 18 6 4.9963 9.7498 0.1168 19 7 5.3420 9.7477 -1.1450 20 14 4.2473 11.2826 0.8774 21 1 2.7836 11.2948 0.6274 22 1 4.8635 12.4889 0.2688 23 1 4.4996 11.2829 2.3409 24 6 5.8967 6.2623 0.8967 25 6 6.0811 2.1765 -1.2502 26 6 5.4707 0.7713 -1.3036 27 8 4.0471 0.8732 -1.2221 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9563 0.8899 34 1 1.6766 1.9564 -0.8900 35 1 3.8456 3.2674 1.1121 36 1 3.6143 3.4988 -0.6402 37 1 8.4659 4.8211 -0.7418 38 1 8.7808 7.1330 -1.5216 39 1 7.2556 8.9080 -0.7754 40 1 5.2092 10.5420 -1.6856 41 1 5.0915 6.0151 1.5727 42 1 5.8165 2.7262 -2.1535 43 1 7.1656 2.1027 -1.1692 44 1 5.7481 0.2892 -2.2409 45 1 5.8427 0.1806 -0.4664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619493905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:50 Heat of formation + Delta-G solvation = -113.613217 kcal Electronic energy + Delta-G solvation = -27901.883946 eV Core-core repulsion = 24010.507642 eV Total energy + Delta-G solvation = -3891.376305 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.48851 -37.66784 -36.82496 -35.41385 -35.30327 -34.56465 -33.87308 -31.49734 -30.10806 -29.82585 -28.05909 -25.88912 -25.50732 -23.37065 -21.91711 -21.41631 -21.01893 -20.92757 -18.75568 -17.97666 -17.26476 -16.78069 -16.00453 -15.82931 -15.35904 -15.10168 -15.04903 -14.75262 -14.69139 -14.46585 -14.03417 -13.52690 -13.38948 -13.27033 -12.99366 -12.61711 -12.27786 -12.22497 -11.96598 -11.88317 -11.68054 -11.60233 -11.45914 -11.38770 -11.30753 -11.26278 -11.10270 -11.03384 -10.94132 -10.77060 -10.64450 -10.38759 -10.15877 -9.80054 -9.61004 -9.37654 -8.69194 -8.05814 -7.73189 -6.95245 -4.56613 0.88354 2.15380 2.60373 2.98364 3.00075 3.06472 3.34509 3.66710 3.80760 4.19573 4.37817 4.46284 4.79853 4.82230 4.87071 4.91907 5.01817 5.11829 5.22492 5.32441 5.35234 5.41182 5.50157 5.51169 5.57525 5.72385 5.75218 5.83478 5.90822 5.99834 6.01500 6.09430 6.13389 6.18885 6.23749 6.54645 6.61637 6.73378 6.87822 7.01472 7.11986 7.18588 7.34612 7.69257 7.77710 7.91090 8.37163 8.64044 8.68729 10.00267 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011858 B = 0.003538 C = 0.002998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.614432 B = 7912.061108 C = 9337.349675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.113 4.113 4 C 0.081 3.919 5 H 0.062 0.938 6 C 0.090 3.910 7 N -1.003 6.003 8 S 2.686 3.314 9 O -0.972 6.972 10 O -0.968 6.968 11 C -0.631 4.631 12 C -0.148 4.148 13 C -0.121 4.121 14 C -0.118 4.118 15 C 0.092 3.908 16 C -0.461 4.461 17 H 0.083 0.917 18 C 0.075 3.925 19 N -0.794 5.794 20 Si 0.911 3.089 21 H -0.269 1.269 22 H -0.274 1.274 23 H -0.259 1.259 24 C -0.125 4.125 25 C 0.084 3.916 26 C 0.053 3.947 27 O -0.374 6.374 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.051 0.949 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.079 0.921 37 H 0.105 0.895 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.283 0.717 41 H 0.111 0.889 42 H 0.077 0.923 43 H 0.102 0.898 44 H 0.104 0.896 45 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.759 -13.241 -1.888 14.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.151 4.151 4 C 0.022 3.978 5 H 0.080 0.920 6 C -0.036 4.036 7 N -0.840 5.840 8 S 2.785 3.215 9 O -0.963 6.963 10 O -0.959 6.959 11 C -0.723 4.723 12 C -0.169 4.169 13 C -0.140 4.140 14 C -0.137 4.137 15 C 0.089 3.911 16 C -0.490 4.490 17 H 0.101 0.899 18 C -0.143 4.143 19 N -0.419 5.419 20 Si 0.735 3.265 21 H -0.194 1.194 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.146 4.146 25 C -0.041 4.041 26 C -0.025 4.025 27 O -0.293 6.293 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.117 0.883 39 H 0.143 0.857 40 H 0.094 0.906 41 H 0.129 0.871 42 H 0.096 0.904 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -4.521 -13.566 -1.495 14.377 hybrid contribution -0.161 1.610 -0.173 1.627 sum -4.682 -11.956 -1.668 12.948 Atomic orbital electron populations 1.21781 0.95945 1.01431 1.01842 1.21462 0.95542 0.96431 1.02400 1.21635 0.92001 0.98021 1.03416 1.22394 0.94869 0.93100 0.87439 0.91960 1.22056 0.79621 0.97865 1.04066 1.57851 1.16666 1.69087 1.40351 1.01797 0.72398 0.74445 0.72894 1.93494 1.40414 1.75936 1.86424 1.93511 1.73658 1.87722 1.40991 1.29763 1.07369 1.20577 1.14600 1.20059 0.98724 0.97058 1.01065 1.20813 0.99299 0.93525 1.00368 1.21642 0.93658 0.98807 0.99625 1.17679 0.91462 0.91133 0.90855 1.19615 1.22613 1.00783 1.05968 0.89898 1.25935 0.94054 1.00199 0.94107 1.69775 1.36412 1.29878 1.05869 0.86243 0.79508 0.80001 0.80753 1.19390 1.19925 1.18239 1.20762 0.98495 0.92747 1.02642 1.22101 0.99850 0.93515 0.88674 1.22892 0.81424 0.95604 1.02603 1.87919 1.20695 1.82454 1.38213 0.92774 0.92690 0.92942 0.91249 0.92263 0.90058 0.90626 0.87877 0.90313 0.87696 0.88338 0.85721 0.90569 0.87136 0.90435 0.88003 0.87791 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.84 16 2 C -0.12 -1.09 5.83 -26.73 -0.16 -1.25 16 3 C -0.11 -1.13 4.93 -26.73 -0.13 -1.26 16 4 C 0.08 0.98 2.76 -26.79 -0.07 0.90 16 5 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 6 C 0.09 1.25 5.98 -3.75 -0.02 1.23 16 7 N -1.00 -15.55 3.35 -113.30 -0.38 -15.93 16 8 S 2.69 51.05 5.74 -107.50 -0.62 50.43 16 9 O -0.97 -19.56 15.89 -57.17 -0.91 -20.47 16 10 O -0.97 -20.11 15.88 -57.17 -0.91 -21.02 16 11 C -0.63 -13.86 5.97 -39.66 -0.24 -14.09 16 12 C -0.15 -3.22 9.53 -39.29 -0.37 -3.60 16 13 C -0.12 -2.71 10.02 -39.66 -0.40 -3.11 16 14 C -0.12 -2.92 8.70 -38.87 -0.34 -3.26 16 15 C 0.09 2.37 5.57 -106.83 -0.60 1.78 16 16 C -0.46 -11.73 9.05 -37.74 -0.34 -12.07 16 17 H 0.08 2.03 7.90 -52.49 -0.41 1.61 16 18 C 0.08 1.80 5.15 -17.34 -0.09 1.71 16 19 N -0.79 -19.49 10.96 55.55 0.61 -18.88 16 20 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 23 H -0.26 -5.08 7.11 56.52 0.40 -4.67 16 24 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 25 C 0.08 1.10 6.71 -3.54 -0.02 1.07 16 26 C 0.05 0.59 6.99 37.31 0.26 0.85 16 27 O -0.37 -4.64 9.92 -35.23 -0.35 -4.99 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.67 7.82 -51.93 -0.41 0.27 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.10 1.45 6.94 -51.93 -0.36 1.09 16 36 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.10 2.05 7.60 -52.48 -0.40 1.65 16 38 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 39 H 0.13 3.14 6.17 -52.49 -0.32 2.82 16 40 H 0.28 6.30 8.30 -40.82 -0.34 5.96 16 41 H 0.11 2.52 7.60 -52.48 -0.40 2.12 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 43 H 0.10 1.29 6.95 -51.93 -0.36 0.93 16 44 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -29.87 375.91 -11.30 -41.17 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.87 Total: 6.45 kcal Atomic # 6 Polarization: -32.77 SS G_CDS: -2.51 Total: -35.28 kcal Atomic # 7 Polarization: -35.04 SS G_CDS: 0.23 Total: -34.81 kcal Atomic # 8 Polarization: -44.32 SS G_CDS: -2.17 Total: -46.48 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Atomic # 16 Polarization: 51.05 SS G_CDS: -0.62 Total: 50.43 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -29.87 -11.30 -41.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619493905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.439 kcal (2) G-P(sol) polarization free energy of solvation -29.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds