Wall clock time and date at job start Sat Apr 11 2020 05:37:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47240 * 2 1 4 4 C 1.53004 * 109.70830 * 305.67960 * 3 2 1 5 5 C 1.53300 * 109.68179 * 66.21274 * 3 2 1 6 6 O 1.42959 * 109.22169 * 172.02700 * 5 3 2 7 7 C 1.42961 * 114.16899 * 297.41760 * 6 5 3 8 8 C 1.52879 * 109.29663 * 62.45182 * 7 6 5 9 9 N 1.47153 * 108.60901 * 307.93529 * 8 7 6 10 10 S 1.65596 * 120.98600 * 230.50128 * 9 8 7 11 11 O 1.42094 * 106.40479 * 150.25953 * 10 9 8 12 12 O 1.42098 * 106.39954 * 17.33443 * 10 9 8 13 13 C 1.76200 * 107.21653 * 263.80006 * 10 9 8 14 14 C 1.38661 * 119.87720 * 270.01907 * 13 10 9 15 15 C 1.38605 * 120.50429 * 179.97438 * 14 13 10 16 16 C 1.37637 * 120.24694 * 359.76354 * 15 14 13 17 17 C 1.40693 * 119.74694 * 0.49189 * 16 15 14 18 18 C 1.41397 * 120.24901 * 179.76836 * 17 16 15 19 19 H 1.07996 * 120.00625 * 155.57168 * 18 17 16 20 20 C 1.39947 * 119.99490 * 335.56828 * 18 17 16 21 21 N 1.30817 * 120.00179 * 330.30969 * 20 18 17 22 22 Si 1.86798 * 119.99816 * 150.31204 * 20 18 17 23 23 H 1.48502 * 109.47042 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.46974 * 300.00058 * 22 20 18 25 25 H 1.48496 * 109.47175 * 59.99794 * 22 20 18 26 26 C 1.37601 * 119.87610 * 90.00025 * 13 10 9 27 27 H 1.09004 * 109.47501 * 60.00146 * 1 2 3 28 28 H 1.09006 * 109.47062 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47100 * 299.99858 * 1 2 3 30 30 H 1.09004 * 109.46691 * 240.00243 * 2 1 3 31 31 H 1.08996 * 109.47337 * 120.00203 * 2 1 3 32 32 H 1.09004 * 109.47072 * 299.45745 * 4 3 2 33 33 H 1.08993 * 109.47100 * 59.46279 * 4 3 2 34 34 H 1.09005 * 109.46924 * 179.46009 * 4 3 2 35 35 H 1.08999 * 109.51149 * 291.95379 * 5 3 2 36 36 H 1.09001 * 109.51103 * 52.09961 * 5 3 2 37 37 H 1.08995 * 109.51325 * 182.50739 * 7 6 5 38 38 H 1.09004 * 109.51442 * 302.61329 * 7 6 5 39 39 H 1.08996 * 109.62006 * 188.11923 * 8 7 6 40 40 H 1.09003 * 109.52322 * 67.69843 * 8 7 6 41 41 H 1.08006 * 119.74395 * 359.97438 * 14 13 10 42 42 H 1.08005 * 119.87696 * 180.02562 * 15 14 13 43 43 H 1.08007 * 120.12927 * 180.27497 * 16 15 14 44 44 H 0.97000 * 120.00586 * 354.24631 * 21 20 18 45 45 H 1.07990 * 120.12768 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 1.4199 2.2089 -1.1700 5 6 1.6632 2.1233 1.3208 6 8 2.2999 3.4014 1.3899 7 6 3.7283 3.3444 1.3922 8 6 4.2114 2.7250 0.0806 9 7 3.5063 1.4497 -0.1242 10 16 4.3387 0.0624 -0.4770 11 8 3.5754 -1.0105 0.0571 12 8 5.6928 0.3055 -0.1212 13 6 4.3116 -0.1310 -2.2282 14 6 3.2821 -0.8395 -2.8289 15 6 3.2476 -0.9992 -4.2053 16 6 4.2348 -0.4505 -4.9919 17 6 5.2872 0.2658 -4.3929 18 6 6.3096 0.8297 -5.1904 19 1 6.8738 1.6756 -4.8266 20 6 6.5904 0.2915 -6.4514 21 7 6.3874 -0.9805 -6.6797 22 14 7.2552 1.3895 -7.8085 23 1 7.4675 0.5837 -9.0377 24 1 6.2804 2.4737 -8.0901 25 1 8.5457 1.9840 -7.3767 26 6 5.3118 0.4219 -2.9944 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8932 -0.5138 -0.8901 31 1 1.8933 -0.5138 0.8899 32 1 1.7056 1.7332 -2.1082 33 1 0.3342 2.2014 -1.0747 34 1 1.7783 3.2383 -1.1607 35 1 0.5819 2.2521 1.3685 36 1 1.9942 1.5060 2.1560 37 1 4.1327 4.3517 1.4912 38 1 4.0670 2.7322 2.2281 39 1 5.2852 2.5462 0.1339 40 1 3.9920 3.4024 -0.7447 41 1 2.5012 -1.2702 -2.2197 42 1 2.4407 -1.5526 -4.6627 43 1 4.2037 -0.5724 -6.0646 44 1 6.1222 -1.5673 -5.9542 45 1 6.1127 0.9732 -2.5245 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494767.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:54 Heat of formation + Delta-G solvation = -92.447330 kcal Electronic energy + Delta-G solvation = -29367.626982 eV Core-core repulsion = 25477.168499 eV Total energy + Delta-G solvation = -3890.458483 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.96143 -37.90003 -37.26942 -35.85417 -35.39578 -34.12340 -33.68876 -30.12310 -29.97911 -29.76895 -28.15266 -26.27854 -25.36158 -24.70779 -22.07100 -21.88894 -21.23647 -20.35182 -18.78687 -18.04732 -16.94001 -16.79274 -16.31752 -15.71119 -15.38493 -15.18017 -14.97907 -14.83372 -14.35140 -14.22460 -13.95762 -13.75673 -13.43552 -13.21318 -12.79873 -12.65644 -12.61556 -12.19458 -11.97728 -11.87127 -11.73648 -11.58579 -11.56024 -11.39513 -11.31911 -11.17692 -11.10888 -10.96935 -10.77930 -10.52066 -10.44035 -10.32928 -9.80025 -9.77778 -9.65388 -9.13123 -8.73224 -8.25833 -7.92885 -7.41820 -4.64667 0.82825 2.00981 2.55646 3.05704 3.11465 3.25149 3.27147 3.73219 3.88385 4.13531 4.28417 4.56147 4.61038 4.69089 4.93813 4.99084 5.08500 5.16692 5.24085 5.31211 5.37704 5.46193 5.53167 5.59481 5.64598 5.75417 5.83662 5.86768 5.90979 5.95584 6.11919 6.21334 6.24491 6.40615 6.43689 6.51323 6.57597 6.62523 6.83612 7.00706 7.02529 7.22151 7.43721 7.52253 7.59432 7.86238 7.98719 8.48331 8.62488 9.82754 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.016635 B = 0.003928 C = 0.003712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1682.792845 B = 7126.871048 C = 7540.665268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.151 4.151 3 C 0.151 3.849 4 C -0.157 4.157 5 C 0.062 3.938 6 O -0.377 6.377 7 C 0.052 3.948 8 C 0.082 3.918 9 N -0.994 5.994 10 S 2.682 3.318 11 O -0.966 6.966 12 O -0.972 6.972 13 C -0.617 4.617 14 C -0.171 4.171 15 C -0.096 4.096 16 C -0.180 4.180 17 C 0.080 3.920 18 C -0.521 4.521 19 H 0.081 0.919 20 C 0.042 3.958 21 N -0.784 5.784 22 Si 1.064 2.936 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.273 1.273 26 C -0.126 4.126 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.104 0.896 36 H 0.055 0.945 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.077 0.923 41 H 0.110 0.890 42 H 0.099 0.901 43 H 0.110 0.890 44 H 0.299 0.701 45 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.567 6.348 10.465 14.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.189 4.189 3 C 0.064 3.936 4 C -0.216 4.216 5 C -0.016 4.016 6 O -0.295 6.295 7 C -0.026 4.026 8 C -0.043 4.043 9 N -0.831 5.831 10 S 2.782 3.218 11 O -0.956 6.956 12 O -0.962 6.962 13 C -0.708 4.708 14 C -0.191 4.191 15 C -0.116 4.116 16 C -0.199 4.199 17 C 0.076 3.924 18 C -0.548 4.548 19 H 0.099 0.901 20 C -0.182 4.182 21 N -0.406 5.406 22 Si 0.887 3.113 23 H -0.197 1.197 24 H -0.198 1.198 25 H -0.199 1.199 26 C -0.147 4.147 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.122 0.878 36 H 0.073 0.927 37 H 0.123 0.877 38 H 0.072 0.928 39 H 0.122 0.878 40 H 0.096 0.904 41 H 0.128 0.872 42 H 0.117 0.883 43 H 0.128 0.872 44 H 0.112 0.888 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.791 5.914 9.514 13.645 hybrid contribution -0.399 -0.174 0.729 0.849 sum -8.190 5.740 10.242 14.315 Atomic orbital electron populations 1.21914 0.95327 1.02106 1.01692 1.22608 0.96404 0.93059 1.06851 1.21068 0.78776 0.97299 0.96480 1.22167 1.00541 1.00937 0.97921 1.23013 0.98177 0.84942 0.95459 1.87918 1.18693 1.28380 1.94529 1.22845 0.81625 1.01873 0.96305 1.22040 0.98025 0.85491 0.98770 1.57973 1.14848 1.24136 1.86176 1.01965 0.72227 0.72457 0.75200 1.93603 1.70270 1.53215 1.78537 1.93497 1.34109 1.84963 1.83653 1.29852 1.05155 1.12901 1.22929 1.20049 0.98927 1.05235 0.94927 1.20704 0.97989 0.99234 0.93631 1.21377 0.95367 1.04404 0.98792 1.17704 0.92426 0.91010 0.91228 1.20594 1.16623 1.15541 1.02013 0.90092 1.27106 0.93692 0.97029 1.00360 1.70481 1.27058 1.04509 1.38523 0.83651 0.77305 0.75362 0.74992 1.19707 1.19818 1.19869 1.20687 0.97109 1.03032 0.93899 0.92182 0.92177 0.92864 0.89152 0.88234 0.91445 0.91340 0.91768 0.87827 0.92656 0.87713 0.92752 0.87765 0.90425 0.87218 0.88296 0.87245 0.88786 0.87198 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 2 C -0.15 -2.07 3.34 -26.74 -0.09 -2.16 16 3 C 0.15 2.01 0.83 -131.31 -0.11 1.90 16 4 C -0.16 -2.01 8.05 37.16 0.30 -1.71 16 5 C 0.06 0.72 5.23 37.31 0.20 0.91 16 6 O -0.38 -4.60 10.37 -35.23 -0.37 -4.97 16 7 C 0.05 0.57 6.97 37.10 0.26 0.83 16 8 C 0.08 1.08 6.31 -3.75 -0.02 1.06 16 9 N -0.99 -15.09 3.04 -99.52 -0.30 -15.39 16 10 S 2.68 50.44 5.32 -107.50 -0.57 49.87 16 11 O -0.97 -18.59 12.41 -57.17 -0.71 -19.30 16 12 O -0.97 -20.43 15.75 -57.17 -0.90 -21.33 16 13 C -0.62 -13.31 5.97 -39.66 -0.24 -13.55 16 14 C -0.17 -3.60 9.01 -39.29 -0.35 -3.95 16 15 C -0.10 -2.10 10.02 -39.67 -0.40 -2.50 16 16 C -0.18 -4.36 8.09 -38.87 -0.31 -4.67 16 17 C 0.08 2.04 5.29 -106.82 -0.57 1.48 16 18 C -0.52 -13.26 8.95 -37.74 -0.34 -13.59 16 19 H 0.08 2.00 7.99 -52.49 -0.42 1.58 16 20 C 0.04 1.01 4.83 -17.34 -0.08 0.93 16 21 N -0.78 -19.99 12.34 55.55 0.69 -19.31 16 22 Si 1.06 20.56 30.02 -169.99 -5.10 15.46 16 23 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 24 H -0.27 -5.09 7.11 56.52 0.40 -4.68 16 25 H -0.27 -5.02 7.11 56.52 0.40 -4.62 16 26 C -0.13 -3.01 9.26 -38.87 -0.36 -3.37 16 27 H 0.06 0.60 6.35 -51.93 -0.33 0.27 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.05 0.46 6.81 -51.93 -0.35 0.11 16 30 H 0.09 1.42 3.40 -51.93 -0.18 1.25 16 31 H 0.10 1.45 6.55 -51.93 -0.34 1.11 16 32 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.07 0.72 6.33 -51.93 -0.33 0.40 16 34 H 0.06 0.82 7.24 -51.93 -0.38 0.44 16 35 H 0.10 0.97 7.03 -51.93 -0.36 0.61 16 36 H 0.06 0.62 8.13 -51.93 -0.42 0.19 16 37 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.10 1.39 6.83 -51.93 -0.35 1.04 16 40 H 0.08 0.97 7.69 -51.93 -0.40 0.58 16 41 H 0.11 2.07 5.49 -52.48 -0.29 1.79 16 42 H 0.10 1.88 8.06 -52.48 -0.42 1.45 16 43 H 0.11 2.70 6.60 -52.48 -0.35 2.36 16 44 H 0.30 7.85 7.02 -40.82 -0.29 7.57 16 45 H 0.11 2.55 7.60 -52.49 -0.40 2.15 16 LS Contribution 353.57 15.07 5.33 5.33 Total: -1.00 -29.39 353.57 -9.81 -39.20 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: -6.09 Total: 10.10 kcal Atomic # 6 Polarization: -37.89 SS G_CDS: -1.78 Total: -39.66 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: 0.38 Total: -34.70 kcal Atomic # 8 Polarization: -43.62 SS G_CDS: -1.98 Total: -45.59 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.10 Total: 15.46 kcal Atomic # 16 Polarization: 50.44 SS G_CDS: -0.57 Total: 49.87 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.39 -9.81 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494767.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.246 kcal (2) G-P(sol) polarization free energy of solvation -29.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds