Wall clock time and date at job start Sat Apr 11 2020 05:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.46988 * 2 1 4 4 C 1.52994 * 109.71195 * 54.89113 * 3 2 1 5 5 C 1.53300 * 109.68026 * 294.35060 * 3 2 1 6 6 O 1.42964 * 109.22115 * 187.97892 * 5 3 2 7 7 C 1.42967 * 114.16695 * 62.57933 * 6 5 3 8 8 C 1.53291 * 109.22130 * 297.41932 * 7 6 5 9 9 N 1.47145 * 108.38784 * 52.30298 * 8 7 6 10 10 S 1.65599 * 120.98095 * 129.48329 * 9 8 7 11 11 O 1.42106 * 106.40436 * 212.56868 * 10 9 8 12 12 O 1.42102 * 106.40461 * 345.48649 * 10 9 8 13 13 C 1.76196 * 107.21882 * 99.02983 * 10 9 8 14 14 C 1.38661 * 119.87813 * 97.05226 * 13 10 9 15 15 C 1.38618 * 120.50259 * 179.97438 * 14 13 10 16 16 C 1.37635 * 120.24401 * 359.97438 * 15 14 13 17 17 C 1.40691 * 119.75188 * 0.02562 * 16 15 14 18 18 C 1.41395 * 120.24842 * 180.02562 * 17 16 15 19 19 H 1.08000 * 119.99932 * 145.63032 * 18 17 16 20 20 C 1.39945 * 120.00310 * 325.62889 * 18 17 16 21 21 N 1.30823 * 119.99498 * 3.58255 * 20 18 17 22 22 Si 1.86802 * 120.00361 * 183.57636 * 20 18 17 23 23 H 1.48495 * 109.46764 * 60.00091 * 22 20 18 24 24 H 1.48498 * 109.47038 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47174 * 300.00335 * 22 20 18 26 26 C 1.37600 * 119.87334 * 276.77608 * 13 10 9 27 27 H 1.08998 * 109.47256 * 300.00364 * 1 2 3 28 28 H 1.09000 * 109.46993 * 60.00550 * 1 2 3 29 29 H 1.08997 * 109.46892 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47256 * 239.99636 * 2 1 3 31 31 H 1.09000 * 109.47045 * 120.00004 * 2 1 3 32 32 H 1.09010 * 109.46857 * 299.45798 * 4 3 2 33 33 H 1.08991 * 109.47566 * 59.45964 * 4 3 2 34 34 H 1.09002 * 109.47396 * 179.46440 * 4 3 2 35 35 H 1.09001 * 109.50937 * 307.89698 * 5 3 2 36 36 H 1.08990 * 109.51221 * 68.00354 * 5 3 2 37 37 H 1.08996 * 109.51066 * 57.34341 * 7 6 5 38 38 H 1.09001 * 109.50992 * 177.44553 * 7 6 5 39 39 H 1.09004 * 109.67914 * 172.02842 * 8 7 6 40 40 H 1.08999 * 109.68222 * 292.57661 * 8 7 6 41 41 H 1.07997 * 119.74872 * 359.97438 * 14 13 10 42 42 H 1.07999 * 119.87391 * 179.97438 * 15 14 13 43 43 H 1.08002 * 120.12714 * 179.97438 * 16 15 14 44 44 H 0.97006 * 119.99623 * 180.02562 * 21 20 18 45 45 H 1.07994 * 120.13010 * 0.02562 * 26 13 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.4310 2.2051 1.1782 5 6 1.6510 2.1276 -1.3150 6 8 2.2871 3.4060 -1.3859 7 6 3.7155 3.3489 -1.4016 8 6 4.2102 2.7263 -0.0911 9 7 3.5074 1.4494 0.1105 10 16 4.3431 0.0611 0.4521 11 8 3.6124 -1.0035 -0.1413 12 8 5.7062 0.3295 0.1535 13 6 4.2547 -0.1855 2.1945 14 6 3.3008 -1.0416 2.7234 15 6 3.2200 -1.2456 4.0922 16 6 4.0885 -0.5990 4.9418 17 6 5.0605 0.2720 4.4165 18 6 5.9583 0.9413 5.2797 19 1 6.9718 1.1343 4.9603 20 6 5.5338 1.3536 6.5478 21 7 4.3285 1.0584 6.9620 22 14 6.6881 2.3252 7.6492 23 1 7.0722 3.5892 6.9710 24 1 6.0042 2.6380 8.9297 25 1 7.9057 1.5204 7.9226 26 6 5.1362 0.4679 3.0248 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.3452 2.2143 1.0828 33 1 1.7096 1.7153 2.1112 34 1 1.8042 3.2293 1.1801 35 1 1.9743 1.5131 -2.1552 36 1 0.5693 2.2558 -1.3526 37 1 4.0462 2.7388 -2.2421 38 1 4.1190 4.3565 -1.5020 39 1 5.2840 2.5489 -0.1513 40 1 3.9948 3.3990 0.7391 41 1 2.6155 -1.5534 2.0640 42 1 2.4728 -1.9143 4.4932 43 1 4.0236 -0.7590 6.0080 44 1 4.0341 1.3445 7.8409 45 1 5.8810 1.1311 2.6105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619494768.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:57 Heat of formation + Delta-G solvation = -87.979494 kcal Electronic energy + Delta-G solvation = -29446.306704 eV Core-core repulsion = 25556.041961 eV Total energy + Delta-G solvation = -3890.264743 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.88305 -37.71555 -37.17358 -35.79090 -35.34421 -33.80582 -33.60955 -30.11317 -29.89271 -29.83327 -28.06859 -26.20364 -25.52731 -24.65337 -22.00190 -21.80424 -21.04707 -20.28241 -18.51368 -17.79756 -16.83049 -16.66286 -16.03730 -15.67178 -15.40242 -15.13070 -15.09194 -14.84578 -14.59270 -14.13712 -13.75455 -13.46541 -13.33820 -13.12914 -12.71769 -12.57291 -12.52273 -12.01509 -11.91027 -11.80487 -11.73016 -11.50647 -11.48353 -11.29215 -11.25242 -11.11083 -11.01620 -10.95500 -10.92245 -10.61091 -10.41203 -10.30564 -9.81543 -9.73797 -9.55439 -9.35767 -8.66535 -8.03881 -7.61808 -6.80339 -4.59741 0.90825 2.15207 2.60204 3.00257 3.02258 3.06233 3.32086 3.79042 3.85177 4.20921 4.44972 4.62548 4.68524 4.76032 5.00644 5.04688 5.15039 5.28466 5.32605 5.38053 5.43816 5.51823 5.59153 5.66477 5.71663 5.82511 5.91778 5.97326 5.99441 6.04119 6.18180 6.26857 6.31443 6.48686 6.58123 6.61487 6.68505 6.76776 6.90924 7.08186 7.09033 7.19242 7.31771 7.69118 7.82372 7.94537 8.39890 8.68112 8.72054 10.11986 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.014560 B = 0.004203 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.668389 B = 6661.070587 C = 7028.167171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.153 4.153 3 C 0.153 3.847 4 C -0.157 4.157 5 C 0.063 3.937 6 O -0.377 6.377 7 C 0.052 3.948 8 C 0.082 3.918 9 N -0.994 5.994 10 S 2.684 3.316 11 O -0.969 6.969 12 O -0.973 6.973 13 C -0.639 4.639 14 C -0.138 4.138 15 C -0.127 4.127 16 C -0.104 4.104 17 C 0.087 3.913 18 C -0.464 4.464 19 H 0.079 0.921 20 C 0.071 3.929 21 N -0.813 5.813 22 Si 0.918 3.082 23 H -0.265 1.265 24 H -0.278 1.278 25 H -0.264 1.264 26 C -0.111 4.111 27 H 0.060 0.940 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.102 0.898 31 H 0.087 0.913 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.103 0.897 37 H 0.054 0.946 38 H 0.104 0.896 39 H 0.105 0.895 40 H 0.078 0.922 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.135 0.865 44 H 0.281 0.719 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.185 3.245 -10.673 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.192 4.192 3 C 0.065 3.935 4 C -0.215 4.215 5 C -0.016 4.016 6 O -0.295 6.295 7 C -0.026 4.026 8 C -0.044 4.044 9 N -0.831 5.831 10 S 2.783 3.217 11 O -0.959 6.959 12 O -0.964 6.964 13 C -0.731 4.731 14 C -0.159 4.159 15 C -0.146 4.146 16 C -0.124 4.124 17 C 0.084 3.916 18 C -0.495 4.495 19 H 0.098 0.902 20 C -0.145 4.145 21 N -0.440 5.440 22 Si 0.743 3.257 23 H -0.189 1.189 24 H -0.203 1.203 25 H -0.189 1.189 26 C -0.133 4.133 27 H 0.079 0.921 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.121 0.879 37 H 0.072 0.928 38 H 0.122 0.878 39 H 0.123 0.877 40 H 0.097 0.903 41 H 0.129 0.871 42 H 0.117 0.883 43 H 0.153 0.847 44 H 0.092 0.908 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -5.973 2.935 -11.117 12.957 hybrid contribution 0.413 0.428 1.511 1.623 sum -5.561 3.362 -9.607 11.598 Atomic orbital electron populations 1.21887 0.95215 1.02088 1.01721 1.22588 0.96624 0.93266 1.06684 1.21037 0.78788 0.97208 0.96466 1.22156 1.00490 1.00994 0.97891 1.23008 0.98115 0.84903 0.95532 1.87917 1.18713 1.28374 1.94542 1.22921 0.81609 1.01802 0.96303 1.22129 0.98027 0.85477 0.98747 1.57967 1.14763 1.23938 1.86466 1.01889 0.72259 0.72314 0.75230 1.93573 1.71943 1.53771 1.76635 1.93494 1.33261 1.84684 1.84948 1.29789 1.08564 1.12161 1.22564 1.20216 0.99029 1.01179 0.95472 1.20897 0.99727 1.00679 0.93326 1.21927 0.96071 0.94096 1.00312 1.17719 0.92883 0.90251 0.90743 1.19524 0.98802 1.32936 0.98212 0.90237 1.25878 0.95453 0.95288 0.97834 1.69685 1.17161 1.37938 1.19252 0.86193 0.80455 0.80388 0.78680 1.18939 1.20303 1.18893 1.20851 0.98203 0.99852 0.94365 0.92148 0.92868 0.92195 0.87997 0.89437 0.91452 0.91335 0.91783 0.92679 0.87882 0.92792 0.87796 0.87728 0.90329 0.87127 0.88276 0.84727 0.90781 0.87379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.20 37.16 0.34 -1.32 16 2 C -0.15 -2.16 3.35 -26.73 -0.09 -2.25 16 3 C 0.15 2.10 0.83 -131.31 -0.11 1.99 16 4 C -0.16 -2.15 8.03 37.15 0.30 -1.85 16 5 C 0.06 0.74 5.22 37.31 0.19 0.94 16 6 O -0.38 -4.77 10.39 -35.23 -0.37 -5.14 16 7 C 0.05 0.59 6.99 37.31 0.26 0.85 16 8 C 0.08 1.11 6.33 -3.54 -0.02 1.09 16 9 N -0.99 -15.44 3.03 -99.30 -0.30 -15.74 16 10 S 2.68 50.43 5.26 -107.50 -0.57 49.86 16 11 O -0.97 -18.54 12.47 -57.17 -0.71 -19.26 16 12 O -0.97 -20.29 15.90 -57.17 -0.91 -21.20 16 13 C -0.64 -13.73 5.92 -39.66 -0.23 -13.97 16 14 C -0.14 -2.92 8.66 -39.28 -0.34 -3.26 16 15 C -0.13 -2.79 10.02 -39.66 -0.40 -3.18 16 16 C -0.10 -2.56 8.67 -38.88 -0.34 -2.90 16 17 C 0.09 2.23 5.55 -106.82 -0.59 1.63 16 18 C -0.46 -11.85 9.05 -37.74 -0.34 -12.19 16 19 H 0.08 1.95 7.85 -52.49 -0.41 1.54 16 20 C 0.07 1.71 5.42 -17.34 -0.09 1.62 16 21 N -0.81 -20.10 10.61 55.55 0.59 -19.51 16 22 Si 0.92 18.25 29.56 -169.99 -5.03 13.23 16 23 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 24 H -0.28 -5.39 7.11 56.52 0.40 -4.99 16 25 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 26 C -0.11 -2.63 9.26 -38.87 -0.36 -2.99 16 27 H 0.06 0.64 6.38 -51.93 -0.33 0.31 16 28 H 0.05 0.48 6.79 -51.93 -0.35 0.13 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.10 1.51 6.46 -51.93 -0.34 1.17 16 31 H 0.09 1.40 3.58 -51.93 -0.19 1.22 16 32 H 0.07 0.77 6.40 -51.92 -0.33 0.44 16 33 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.06 0.88 7.20 -51.93 -0.37 0.51 16 35 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 36 H 0.10 1.01 7.01 -51.93 -0.36 0.65 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.10 1.42 6.79 -51.93 -0.35 1.07 16 40 H 0.08 1.04 7.64 -51.93 -0.40 0.64 16 41 H 0.11 2.10 5.80 -52.49 -0.30 1.80 16 42 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 43 H 0.14 3.41 6.14 -52.49 -0.32 3.08 16 44 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 45 H 0.11 2.45 7.77 -52.49 -0.41 2.04 16 LS Contribution 353.89 15.07 5.33 5.33 Total: -1.00 -29.04 353.89 -9.92 -38.96 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -6.14 Total: 9.24 kcal Atomic # 6 Polarization: -33.95 SS G_CDS: -1.82 Total: -35.78 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.29 Total: -35.26 kcal Atomic # 8 Polarization: -43.61 SS G_CDS: -1.99 Total: -45.59 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.23 kcal Atomic # 16 Polarization: 50.43 SS G_CDS: -0.57 Total: 49.86 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -29.04 -9.92 -38.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619494768.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.016 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds