Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.52155 * 2 1 4 4 C 1.53188 * 109.49463 * 239.91885 * 2 1 3 5 5 N 1.46929 * 108.77232 * 185.41686 * 4 2 1 6 6 S 1.65606 * 120.62886 * 233.62944 * 5 4 2 7 7 O 1.42104 * 106.39995 * 23.51841 * 6 5 4 8 8 O 1.42102 * 106.40184 * 156.43434 * 6 5 4 9 9 C 1.76198 * 107.21802 * 269.97825 * 6 5 4 10 10 C 1.38659 * 119.86987 * 269.72632 * 9 6 5 11 11 C 1.38617 * 120.49560 * 179.72232 * 10 9 6 12 12 C 1.37649 * 120.24940 * 0.55276 * 11 10 9 13 13 C 1.40696 * 119.74250 * 359.72481 * 12 11 10 14 14 C 1.41394 * 120.24388 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99965 * 204.39863 * 14 13 12 16 16 C 1.39943 * 120.00073 * 24.38857 * 14 13 12 17 17 N 1.30828 * 119.99826 * 17.86795 * 16 14 13 18 18 Si 1.86803 * 120.00138 * 197.85912 * 16 14 13 19 19 H 1.48500 * 109.47288 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47093 * 120.00817 * 18 16 14 21 21 H 1.48508 * 109.46908 * 240.00393 * 18 16 14 22 22 C 1.37592 * 119.87590 * 89.99831 * 9 6 5 23 23 C 1.46922 * 118.74387 * 53.60344 * 5 4 2 24 24 C 1.53191 * 108.77669 * 306.39875 * 23 5 4 25 25 C 1.53039 * 109.49452 * 120.07819 * 2 1 3 26 26 H 1.09003 * 109.44911 * 61.30752 * 25 2 1 27 27 O 1.42898 * 109.46467 * 301.33399 * 25 2 1 28 28 H 1.09005 * 109.46668 * 299.91819 * 1 2 3 29 29 H 1.08994 * 109.47415 * 59.91853 * 1 2 3 30 30 H 1.08998 * 109.46863 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46958 * 180.08349 * 3 2 1 32 32 H 1.08999 * 109.47283 * 300.07813 * 3 2 1 33 33 H 1.09003 * 109.47660 * 60.08341 * 3 2 1 34 34 H 1.08997 * 109.58741 * 65.62845 * 4 2 1 35 35 H 1.08999 * 109.58545 * 305.19757 * 4 2 1 36 36 H 1.07996 * 119.75448 * 359.97438 * 10 9 6 37 37 H 1.07999 * 119.87614 * 180.27586 * 11 10 9 38 38 H 1.08002 * 120.12689 * 179.70827 * 12 11 10 39 39 H 0.97001 * 119.99899 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.13113 * 0.02562 * 22 9 6 41 41 H 1.08996 * 109.58779 * 186.60421 * 23 5 4 42 42 H 1.09002 * 109.70426 * 66.25062 * 23 5 4 43 43 H 1.09002 * 109.49376 * 294.67688 * 24 23 5 44 44 H 1.08998 * 109.52433 * 174.59970 * 24 23 5 45 45 H 0.96701 * 114.00133 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8292 -1.1695 6 16 4.4588 -0.2843 -2.4085 7 8 3.6922 0.6864 -3.1082 8 8 5.7325 -0.0080 -1.8423 9 6 4.6899 -1.6316 -3.5202 10 6 5.7652 -2.4904 -3.3503 11 6 5.9562 -3.5578 -4.2138 12 6 5.0846 -3.7697 -5.2578 13 6 3.9932 -2.9012 -5.4432 14 6 3.0916 -3.1087 -6.5124 15 1 2.5165 -2.2817 -6.9021 16 6 2.9445 -4.3856 -7.0660 17 7 3.3506 -5.4371 -6.4020 18 14 2.1680 -4.5886 -8.7528 19 1 1.7967 -3.2551 -9.2906 20 1 3.1386 -5.2389 -9.6694 21 1 0.9518 -5.4333 -8.6394 22 6 3.8059 -1.8242 -4.5568 23 6 4.1053 -1.4267 0.0308 24 6 3.5708 -0.6950 1.2660 25 6 2.0408 -0.7230 1.2484 26 1 1.6967 -1.7572 1.2351 27 8 1.5392 -0.0693 2.4159 28 1 -0.3633 0.5126 0.8908 29 1 -0.3634 0.5151 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1314 1.4410 -0.0015 32 1 1.6773 1.9566 -0.8893 33 1 1.6797 1.9558 0.8907 34 1 1.7638 -0.1579 -2.1388 35 1 1.6052 -1.7216 -1.2979 36 1 6.4569 -2.3288 -2.5368 37 1 6.7947 -4.2231 -4.0696 38 1 5.2379 -4.5992 -5.9322 39 1 3.2484 -6.3222 -6.7855 40 1 2.9718 -1.1512 -4.6901 41 1 5.1896 -1.3246 -0.0138 42 1 3.8398 -2.4823 0.0881 43 1 3.9159 0.3388 1.2541 44 1 3.9334 -1.1892 2.1674 45 1 1.8231 -0.4751 3.2465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619498689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -115.133728 kcal Electronic energy + Delta-G solvation = -28618.610820 eV Core-core repulsion = 24727.168582 eV Total energy + Delta-G solvation = -3891.442239 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.80704 -37.65635 -36.77499 -36.03859 -35.31962 -33.87660 -33.82935 -31.06022 -30.10092 -29.80230 -27.25770 -26.65580 -25.50638 -24.13974 -22.30262 -21.84835 -21.00291 -19.05281 -18.57109 -17.92077 -17.44579 -17.01910 -15.98173 -15.78741 -15.28378 -15.05214 -14.82144 -14.52414 -14.35206 -14.25244 -13.56800 -13.47651 -13.37018 -13.23736 -12.60965 -12.33773 -12.24474 -12.13338 -11.96714 -11.92050 -11.78466 -11.63560 -11.42748 -11.39314 -11.37327 -11.23323 -11.05053 -11.00955 -10.92802 -10.66667 -10.60228 -10.25446 -9.90205 -9.78634 -9.63098 -9.37946 -8.81341 -8.05279 -7.72967 -6.95440 -4.56043 0.94120 2.17101 2.60207 2.98748 3.02402 3.05684 3.42043 3.81077 4.04817 4.24924 4.37775 4.52663 4.58741 4.80033 4.92246 5.04818 5.12858 5.19131 5.27612 5.38824 5.50452 5.61477 5.66587 5.69027 5.76400 5.83410 5.92035 5.98302 6.01858 6.08623 6.10417 6.14808 6.19123 6.37199 6.43302 6.61811 6.66398 6.74493 6.90939 7.02323 7.19541 7.35828 7.51060 7.70316 7.78671 7.91860 8.38102 8.64586 8.69449 9.99991 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.003583 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.990555 B = 7812.371102 C = 8509.474691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.140 4.140 4 C 0.128 3.872 5 N -0.999 5.999 6 S 2.686 3.314 7 O -0.967 6.967 8 O -0.974 6.974 9 C -0.632 4.632 10 C -0.149 4.149 11 C -0.120 4.120 12 C -0.119 4.119 13 C 0.092 3.908 14 C -0.460 4.460 15 H 0.083 0.917 16 C 0.075 3.925 17 N -0.794 5.794 18 Si 0.910 3.090 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.273 1.273 22 C -0.125 4.125 23 C 0.123 3.877 24 C -0.166 4.166 25 C 0.118 3.882 26 H 0.057 0.943 27 O -0.563 6.563 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.105 0.895 37 H 0.098 0.902 38 H 0.125 0.875 39 H 0.283 0.717 40 H 0.111 0.889 41 H 0.096 0.904 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.139 3.707 13.043 13.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.197 4.197 4 C 0.003 3.997 5 N -0.835 5.835 6 S 2.783 3.217 7 O -0.957 6.957 8 O -0.964 6.964 9 C -0.724 4.724 10 C -0.170 4.170 11 C -0.140 4.140 12 C -0.139 4.139 13 C 0.088 3.912 14 C -0.489 4.489 15 H 0.102 0.898 16 C -0.143 4.143 17 N -0.419 5.419 18 Si 0.734 3.266 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.198 1.198 22 C -0.147 4.147 23 C -0.003 4.003 24 C -0.205 4.205 25 C 0.059 3.941 26 H 0.075 0.925 27 O -0.368 6.368 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.081 0.919 34 H 0.119 0.881 35 H 0.091 0.909 36 H 0.123 0.877 37 H 0.116 0.884 38 H 0.143 0.857 39 H 0.094 0.906 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.098 0.902 44 H 0.093 0.907 45 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -3.078 4.704 12.507 13.712 hybrid contribution -0.054 -1.544 -0.595 1.656 sum -3.132 3.160 11.912 12.716 Atomic orbital electron populations 1.21753 0.93329 1.01974 1.02412 1.20841 0.96263 0.96499 0.93150 1.21852 1.01047 0.94668 1.02153 1.21553 0.78787 1.01002 0.98368 1.57748 1.15993 1.78202 1.31538 1.01815 0.72513 0.74608 0.72722 1.93515 1.71392 1.57810 1.73014 1.93493 1.40397 1.84350 1.78167 1.29819 1.06492 1.20663 1.15438 1.20063 0.98016 0.96959 1.01987 1.20813 0.99146 0.97215 0.96810 1.21645 0.93463 1.00996 0.97765 1.17688 0.91626 0.90548 0.91300 1.19657 1.20669 0.94925 1.13665 0.89843 1.25936 0.94125 0.95370 0.98834 1.69790 1.36326 0.99596 1.36195 0.86215 0.79170 0.79655 0.81511 1.18172 1.19583 1.19836 1.20767 0.98233 1.00808 0.94854 1.21318 0.98762 0.96962 0.83261 1.22670 0.96770 1.02753 0.98342 1.21729 0.91880 0.95079 0.85426 0.92530 1.86511 1.75675 1.58883 1.15736 0.91572 0.92256 0.92657 0.92775 0.92186 0.91893 0.88080 0.90945 0.87710 0.88381 0.85727 0.90628 0.87100 0.88606 0.91180 0.90192 0.90715 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 8.32 37.16 0.31 -1.14 16 2 C -0.07 -0.78 0.60 -154.39 -0.09 -0.87 16 3 C -0.14 -1.79 7.85 37.16 0.29 -1.49 16 4 C 0.13 1.76 5.15 -3.71 -0.02 1.74 16 5 N -1.00 -15.04 2.73 -113.53 -0.31 -15.35 16 6 S 2.69 51.08 5.73 -107.50 -0.62 50.46 16 7 O -0.97 -20.13 15.85 -57.17 -0.91 -21.04 16 8 O -0.97 -19.76 15.85 -57.17 -0.91 -20.67 16 9 C -0.63 -13.85 5.97 -39.66 -0.24 -14.09 16 10 C -0.15 -3.24 9.53 -39.29 -0.37 -3.61 16 11 C -0.12 -2.70 10.02 -39.66 -0.40 -3.09 16 12 C -0.12 -2.95 8.70 -38.87 -0.34 -3.28 16 13 C 0.09 2.36 5.58 -106.82 -0.60 1.76 16 14 C -0.46 -11.69 9.05 -37.74 -0.34 -12.03 16 15 H 0.08 2.05 7.91 -52.48 -0.41 1.63 16 16 C 0.08 1.80 5.14 -17.34 -0.09 1.71 16 17 N -0.79 -19.39 10.95 55.55 0.61 -18.78 16 18 Si 0.91 17.86 29.60 -169.99 -5.03 12.83 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 22 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 23 C 0.12 1.53 6.48 -3.71 -0.02 1.50 16 24 C -0.17 -1.70 5.36 -26.61 -0.14 -1.85 16 25 C 0.12 1.21 2.56 -26.69 -0.07 1.15 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 O -0.56 -5.36 11.98 -35.23 -0.42 -5.79 16 28 H 0.07 0.70 7.65 -51.93 -0.40 0.31 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.73 5.97 -51.92 -0.31 0.42 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.76 7.72 -51.93 -0.40 0.36 16 34 H 0.10 1.47 6.91 -51.93 -0.36 1.11 16 35 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 2.04 7.59 -52.49 -0.40 1.65 16 37 H 0.10 1.91 8.06 -52.49 -0.42 1.49 16 38 H 0.13 3.13 6.16 -52.49 -0.32 2.81 16 39 H 0.28 6.24 8.30 -40.82 -0.34 5.90 16 40 H 0.11 2.52 7.60 -52.49 -0.40 2.13 16 41 H 0.10 1.23 6.92 -51.93 -0.36 0.87 16 42 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 43 H 0.08 0.91 6.34 -51.93 -0.33 0.58 16 44 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 45 H 0.37 2.04 9.08 45.56 0.41 2.46 16 LS Contribution 366.78 15.07 5.53 5.53 Total: -1.00 -30.27 366.78 -10.33 -40.60 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -5.79 Total: 9.17 kcal Atomic # 6 Polarization: -34.48 SS G_CDS: -2.48 Total: -36.96 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.30 Total: -34.12 kcal Atomic # 8 Polarization: -45.26 SS G_CDS: -2.23 Total: -47.50 kcal Atomic # 14 Polarization: 17.86 SS G_CDS: -5.03 Total: 12.83 kcal Atomic # 16 Polarization: 51.08 SS G_CDS: -0.62 Total: 50.46 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -30.27 -10.33 -40.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.534 kcal (2) G-P(sol) polarization free energy of solvation -30.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds