Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.52155 * 2 1 4 4 C 1.53188 * 109.49463 * 239.91885 * 2 1 3 5 5 N 1.46929 * 108.77232 * 185.41686 * 4 2 1 6 6 S 1.65606 * 120.62886 * 233.62944 * 5 4 2 7 7 O 1.42104 * 106.39995 * 23.51841 * 6 5 4 8 8 O 1.42102 * 106.40184 * 156.43434 * 6 5 4 9 9 C 1.76198 * 107.21802 * 269.97825 * 6 5 4 10 10 C 1.38659 * 119.86987 * 269.72632 * 9 6 5 11 11 C 1.38617 * 120.49560 * 179.72232 * 10 9 6 12 12 C 1.37649 * 120.24940 * 0.55276 * 11 10 9 13 13 C 1.40696 * 119.74250 * 359.72481 * 12 11 10 14 14 C 1.41394 * 120.24388 * 179.97438 * 13 12 11 15 15 H 1.08007 * 119.99965 * 204.39863 * 14 13 12 16 16 C 1.39943 * 120.00073 * 24.38857 * 14 13 12 17 17 N 1.30828 * 119.99826 * 17.86795 * 16 14 13 18 18 Si 1.86803 * 120.00138 * 197.85912 * 16 14 13 19 19 H 1.48500 * 109.47288 * 0.02562 * 18 16 14 20 20 H 1.48496 * 109.47093 * 120.00817 * 18 16 14 21 21 H 1.48508 * 109.46908 * 240.00393 * 18 16 14 22 22 C 1.37592 * 119.87590 * 89.99831 * 9 6 5 23 23 C 1.46922 * 118.74387 * 53.60344 * 5 4 2 24 24 C 1.53191 * 108.77669 * 306.39875 * 23 5 4 25 25 C 1.53039 * 109.49452 * 120.07819 * 2 1 3 26 26 H 1.09003 * 109.44911 * 61.30752 * 25 2 1 27 27 O 1.42898 * 109.46467 * 301.33399 * 25 2 1 28 28 H 1.09005 * 109.46668 * 299.91819 * 1 2 3 29 29 H 1.08994 * 109.47415 * 59.91853 * 1 2 3 30 30 H 1.08998 * 109.46863 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.46958 * 180.08349 * 3 2 1 32 32 H 1.08999 * 109.47283 * 300.07813 * 3 2 1 33 33 H 1.09003 * 109.47660 * 60.08341 * 3 2 1 34 34 H 1.08997 * 109.58741 * 65.62845 * 4 2 1 35 35 H 1.08999 * 109.58545 * 305.19757 * 4 2 1 36 36 H 1.07996 * 119.75448 * 359.97438 * 10 9 6 37 37 H 1.07999 * 119.87614 * 180.27586 * 11 10 9 38 38 H 1.08002 * 120.12689 * 179.70827 * 12 11 10 39 39 H 0.97001 * 119.99899 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.13113 * 0.02562 * 22 9 6 41 41 H 1.08996 * 109.58779 * 186.60421 * 23 5 4 42 42 H 1.09002 * 109.70426 * 66.25062 * 23 5 4 43 43 H 1.09002 * 109.49376 * 294.67688 * 24 23 5 44 44 H 1.08998 * 109.52433 * 174.59970 * 24 23 5 45 45 H 0.96701 * 114.00133 * 179.97438 * 27 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0413 1.4420 0.0000 4 6 2.0413 -0.7238 -1.2496 5 7 3.5046 -0.8292 -1.1695 6 16 4.4588 -0.2843 -2.4085 7 8 3.6922 0.6864 -3.1082 8 8 5.7325 -0.0080 -1.8423 9 6 4.6899 -1.6316 -3.5202 10 6 5.7652 -2.4904 -3.3503 11 6 5.9562 -3.5578 -4.2138 12 6 5.0846 -3.7697 -5.2578 13 6 3.9932 -2.9012 -5.4432 14 6 3.0916 -3.1087 -6.5124 15 1 2.5165 -2.2817 -6.9021 16 6 2.9445 -4.3856 -7.0660 17 7 3.3506 -5.4371 -6.4020 18 14 2.1680 -4.5886 -8.7528 19 1 1.7967 -3.2551 -9.2906 20 1 3.1386 -5.2389 -9.6694 21 1 0.9518 -5.4333 -8.6394 22 6 3.8059 -1.8242 -4.5568 23 6 4.1053 -1.4267 0.0308 24 6 3.5708 -0.6950 1.2660 25 6 2.0408 -0.7230 1.2484 26 1 1.6967 -1.7572 1.2351 27 8 1.5392 -0.0693 2.4159 28 1 -0.3633 0.5126 0.8908 29 1 -0.3634 0.5151 -0.8892 30 1 -0.3633 -1.0277 -0.0005 31 1 3.1314 1.4410 -0.0015 32 1 1.6773 1.9566 -0.8893 33 1 1.6797 1.9558 0.8907 34 1 1.7638 -0.1579 -2.1388 35 1 1.6052 -1.7216 -1.2979 36 1 6.4569 -2.3288 -2.5368 37 1 6.7947 -4.2231 -4.0696 38 1 5.2379 -4.5992 -5.9322 39 1 3.2484 -6.3222 -6.7855 40 1 2.9718 -1.1512 -4.6901 41 1 5.1896 -1.3246 -0.0138 42 1 3.8398 -2.4823 0.0881 43 1 3.9159 0.3388 1.2541 44 1 3.9334 -1.1892 2.1674 45 1 1.8231 -0.4751 3.2465 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619498689.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -135.374569 kcal Electronic energy + Delta-G solvation = -28619.488529 eV Core-core repulsion = 24727.168582 eV Total energy + Delta-G solvation = -3892.319948 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.73322 -39.45915 -38.37252 -36.98535 -36.85427 -35.68376 -34.81057 -32.02101 -31.92948 -31.58282 -28.20746 -27.64206 -27.34476 -25.14782 -23.64640 -23.22065 -22.79095 -20.41992 -19.90102 -19.23104 -18.66940 -18.05611 -17.75221 -17.16039 -16.87552 -16.53092 -15.97820 -15.85602 -15.47607 -15.25061 -15.18144 -15.03715 -14.46372 -14.32956 -14.17049 -13.73609 -13.51003 -13.40827 -13.31377 -13.16276 -13.10785 -13.06065 -12.91742 -12.82213 -12.78738 -12.64150 -12.59116 -12.29149 -12.20908 -11.97240 -11.66134 -11.56343 -11.34673 -11.15795 -11.10759 -10.67025 -10.05284 -9.81985 -9.57846 -8.74702 -6.46620 -0.57572 0.38451 0.82297 1.37220 1.43848 1.52159 2.01884 2.17133 2.54980 2.73332 3.29317 3.32555 3.48194 3.58427 3.77774 3.96226 4.08878 4.16469 4.28133 4.29572 4.37093 4.41784 4.61952 4.69712 4.70969 4.79348 4.82161 4.82383 4.88517 4.90711 4.95476 5.04075 5.06408 5.11276 5.18322 5.22873 5.24899 5.38908 5.46667 5.48619 5.54373 5.65448 5.86873 5.92378 6.08652 6.51096 6.78247 6.83104 7.01002 8.23355 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015639 B = 0.003583 C = 0.003290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.990555 B = 7812.371102 C = 8509.474691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.066 4.066 3 C -0.140 4.140 4 C 0.122 3.878 5 N -0.991 5.991 6 S 2.708 3.292 7 O -0.989 6.989 8 O -0.984 6.984 9 C -0.640 4.640 10 C -0.151 4.151 11 C -0.122 4.122 12 C -0.142 4.142 13 C 0.064 3.936 14 C -0.497 4.497 15 H 0.078 0.922 16 C 0.040 3.960 17 N -0.820 5.820 18 Si 0.982 3.018 19 H -0.260 1.260 20 H -0.263 1.263 21 H -0.263 1.263 22 C -0.146 4.146 23 C 0.111 3.889 24 C -0.160 4.160 25 C 0.123 3.877 26 H 0.070 0.930 27 O -0.572 6.572 28 H 0.068 0.932 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.049 0.951 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.084 0.916 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.292 0.708 40 H 0.109 0.891 41 H 0.092 0.908 42 H 0.088 0.912 43 H 0.067 0.933 44 H 0.108 0.892 45 H 0.393 0.607 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.480 3.034 14.756 15.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.068 4.068 3 C -0.197 4.197 4 C -0.003 4.003 5 N -0.830 5.830 6 S 2.803 3.197 7 O -0.979 6.979 8 O -0.974 6.974 9 C -0.728 4.728 10 C -0.171 4.171 11 C -0.141 4.141 12 C -0.162 4.162 13 C 0.061 3.939 14 C -0.526 4.526 15 H 0.096 0.904 16 C -0.176 4.176 17 N -0.445 5.445 18 Si 0.802 3.198 19 H -0.184 1.184 20 H -0.187 1.187 21 H -0.187 1.187 22 C -0.167 4.167 23 C -0.013 4.013 24 C -0.199 4.199 25 C 0.064 3.936 26 H 0.088 0.912 27 O -0.380 6.380 28 H 0.087 0.913 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.102 0.898 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.132 0.868 39 H 0.103 0.897 40 H 0.127 0.873 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.086 0.914 44 H 0.126 0.874 45 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -3.395 4.004 14.225 15.162 hybrid contribution 0.079 -1.291 -0.958 1.610 sum -3.316 2.713 13.266 13.941 Atomic orbital electron populations 1.21723 0.92310 1.02627 1.02435 1.20837 0.97029 0.95715 0.93258 1.21845 1.00304 0.95532 1.02003 1.21727 0.77812 1.01788 0.99005 1.57495 1.16308 1.78226 1.30943 1.01122 0.72365 0.73634 0.72570 1.93482 1.71801 1.58447 1.74168 1.93470 1.41537 1.84287 1.78146 1.30341 1.05772 1.21262 1.15455 1.20450 0.98081 0.96364 1.02249 1.21150 0.99321 0.97745 0.95841 1.21654 0.94367 1.01176 0.99002 1.18040 0.92297 0.91550 0.92044 1.19880 1.21839 0.95845 1.15050 0.90388 1.26716 0.94317 0.94458 1.02109 1.69814 1.36781 1.00237 1.37689 0.85161 0.78585 0.79457 0.76598 1.18407 1.18705 1.18715 1.20837 0.99181 1.00971 0.95702 1.21660 0.98670 0.98193 0.82809 1.22655 0.96790 1.02085 0.98416 1.21598 0.91679 0.95301 0.85014 0.91249 1.86470 1.75735 1.59311 1.16460 0.91278 0.92513 0.91686 0.93875 0.93219 0.91147 0.89656 0.89770 0.85135 0.85449 0.86806 0.89686 0.87305 0.88933 0.89377 0.91436 0.87363 0.75718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 8.32 71.98 0.60 -2.01 16 2 C -0.07 -1.47 0.60 -52.11 -0.03 -1.51 16 3 C -0.14 -3.45 7.85 71.98 0.57 -2.89 16 4 C 0.12 3.24 5.15 86.36 0.45 3.69 16 5 N -0.99 -28.82 2.73 -513.09 -1.40 -30.22 16 6 S 2.71 102.56 5.73 -56.49 -0.32 102.23 16 7 O -0.99 -41.93 15.85 -128.00 -2.03 -43.96 16 8 O -0.98 -39.08 15.85 -128.00 -2.03 -41.11 16 9 C -0.64 -28.18 5.97 22.22 0.13 -28.05 16 10 C -0.15 -6.43 9.53 22.46 0.21 -6.22 16 11 C -0.12 -5.40 10.02 22.22 0.22 -5.17 16 12 C -0.14 -7.21 8.70 22.73 0.20 -7.02 16 13 C 0.06 3.40 5.58 -21.29 -0.12 3.28 16 14 C -0.50 -26.25 9.05 23.46 0.21 -26.03 16 15 H 0.08 4.02 7.91 -2.91 -0.02 4.00 16 16 C 0.04 1.93 5.14 85.26 0.44 2.37 16 17 N -0.82 -40.60 10.95 21.83 0.24 -40.36 16 18 Si 0.98 36.80 29.60 68.60 2.03 38.83 16 19 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 20 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 21 H -0.26 -9.34 7.11 99.48 0.71 -8.63 16 22 C -0.15 -7.20 9.26 22.73 0.21 -6.99 16 23 C 0.11 2.50 6.48 86.36 0.56 3.06 16 24 C -0.16 -2.81 5.36 30.67 0.16 -2.64 16 25 C 0.12 2.17 2.56 30.62 0.08 2.25 16 26 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 27 O -0.57 -9.01 11.98 -148.98 -1.78 -10.80 16 28 H 0.07 1.33 7.65 -2.38 -0.02 1.31 16 29 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.04 1.14 5.97 -2.38 -0.01 1.13 16 32 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.07 1.60 7.72 -2.39 -0.02 1.59 16 34 H 0.09 2.54 6.91 -2.39 -0.02 2.52 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 37 H 0.13 4.77 8.06 -2.91 -0.02 4.75 16 38 H 0.11 5.91 6.16 -2.91 -0.02 5.89 16 39 H 0.29 12.93 8.30 -92.71 -0.77 12.16 16 40 H 0.11 5.23 7.60 -2.91 -0.02 5.21 16 41 H 0.09 2.17 6.92 -2.39 -0.02 2.15 16 42 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.07 1.39 6.34 -2.39 -0.02 1.37 16 44 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.39 2.78 9.08 -74.06 -0.67 2.11 16 Total: -1.00 -66.17 366.78 -1.07 -67.24 By element: Atomic # 1 Polarization: 31.68 SS G_CDS: 0.34 Total: 32.01 kcal Atomic # 6 Polarization: -77.77 SS G_CDS: 3.89 Total: -73.88 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.16 Total: -70.58 kcal Atomic # 8 Polarization: -90.02 SS G_CDS: -5.84 Total: -95.86 kcal Atomic # 14 Polarization: 36.80 SS G_CDS: 2.03 Total: 38.83 kcal Atomic # 16 Polarization: 102.56 SS G_CDS: -0.32 Total: 102.23 kcal Total: -66.17 -1.07 -67.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498689.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.132 kcal (2) G-P(sol) polarization free energy of solvation -66.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds