Wall clock time and date at job start Sat Apr 11 2020 05:38:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46895 * 2 1 4 4 C 1.52997 * 109.55330 * 305.12794 * 3 2 1 5 5 C 1.53292 * 109.51145 * 185.00072 * 3 2 1 6 6 N 1.47147 * 108.38354 * 187.77608 * 5 3 2 7 7 S 1.65609 * 120.98057 * 230.55825 * 6 5 3 8 8 O 1.42101 * 106.40128 * 203.54046 * 7 6 5 9 9 O 1.42097 * 106.40387 * 336.45867 * 7 6 5 10 10 C 1.76201 * 107.21747 * 89.99997 * 7 6 5 11 11 C 1.38660 * 119.87397 * 90.00094 * 10 7 6 12 12 C 1.38613 * 120.49853 * 179.97438 * 11 10 7 13 13 C 1.37633 * 120.25005 * 0.02562 * 12 11 10 14 14 C 1.40700 * 119.74278 * 359.97438 * 13 12 11 15 15 C 1.41401 * 120.24197 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99576 * 155.23103 * 15 14 13 17 17 C 1.39941 * 120.00171 * 335.23756 * 15 14 13 18 18 N 1.30827 * 120.00053 * 342.28230 * 17 15 14 19 19 Si 1.86797 * 120.00240 * 162.29075 * 17 15 14 20 20 H 1.48497 * 109.47291 * 59.99276 * 19 17 15 21 21 H 1.48503 * 109.47500 * 179.97438 * 19 17 15 22 22 H 1.48505 * 109.46983 * 299.99700 * 19 17 15 23 23 C 1.37598 * 119.87559 * 269.72244 * 10 7 6 24 24 C 1.47152 * 118.03903 * 50.53507 * 6 5 3 25 25 C 1.53292 * 108.38235 * 309.46825 * 24 6 5 26 26 O 1.42956 * 109.22619 * 52.30170 * 25 24 6 27 27 H 1.09001 * 109.46777 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.46820 * 299.99715 * 1 2 3 29 29 H 1.08994 * 109.47124 * 59.99715 * 1 2 3 30 30 H 1.08996 * 109.47090 * 240.00573 * 2 1 3 31 31 H 1.08999 * 109.47720 * 119.99886 * 2 1 3 32 32 H 1.08999 * 109.47647 * 299.87485 * 4 3 2 33 33 H 1.09005 * 109.47240 * 59.87818 * 4 3 2 34 34 H 1.08998 * 109.46974 * 179.87064 * 4 3 2 35 35 H 1.09000 * 109.67940 * 68.05075 * 5 3 2 36 36 H 1.08998 * 109.68592 * 307.49929 * 5 3 2 37 37 H 1.08000 * 119.74939 * 359.97438 * 11 10 7 38 38 H 1.08003 * 119.87086 * 179.97438 * 12 11 10 39 39 H 1.07995 * 120.12896 * 180.02562 * 13 12 11 40 40 H 0.96998 * 119.99756 * 179.97438 * 18 17 15 41 41 H 1.07997 * 120.12471 * 0.02562 * 23 10 7 42 42 H 1.09003 * 109.68250 * 69.18844 * 24 6 5 43 43 H 1.08995 * 109.68292 * 189.74057 * 24 6 5 44 44 H 1.08997 * 109.51072 * 172.22460 * 25 24 6 45 45 H 1.09000 * 109.51319 * 292.37095 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.4285 2.2019 -1.1792 5 6 3.5677 1.4456 -0.1259 6 7 4.0464 2.8239 0.0644 7 16 5.0842 3.5233 -1.0201 8 8 5.7639 4.5546 -0.3174 9 8 5.7561 2.4575 -1.6773 10 6 4.0996 4.3210 -2.2444 11 6 3.7174 5.6424 -2.0701 12 6 2.9434 6.2827 -3.0252 13 6 2.5449 5.6113 -4.1587 14 6 2.9268 4.2701 -4.3461 15 6 2.5239 3.5704 -5.5069 16 1 3.1030 2.7295 -5.8588 17 6 1.3748 3.9677 -6.1998 18 7 0.4908 4.7348 -5.6153 19 14 1.1030 3.4026 -7.9594 20 1 1.0519 1.9191 -8.0006 21 1 -0.1792 3.9558 -8.4646 22 1 2.2200 3.8832 -8.8118 23 6 3.7176 3.6319 -3.3725 24 6 3.5752 3.5627 1.2466 25 6 2.0471 3.4565 1.3057 26 8 1.6673 2.0807 1.2239 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8933 -0.5137 -0.8900 31 1 1.8935 -0.5138 0.8899 32 1 1.7167 1.7174 -2.1121 33 1 0.3422 2.1994 -1.0889 34 1 1.7909 3.2298 -1.1765 35 1 3.8551 1.0905 -1.1156 36 1 4.0003 0.7981 0.6368 37 1 4.0252 6.1768 -1.1835 38 1 2.6511 7.3121 -2.8790 39 1 1.9422 6.1122 -4.9018 40 1 -0.3055 5.0104 -6.0957 41 1 4.0198 2.6040 -3.5082 42 1 4.0085 3.1284 2.1476 43 1 3.8677 4.6096 1.1659 44 1 1.6890 3.8778 2.2450 45 1 1.6115 4.0048 0.4705 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619498953.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:19 Heat of formation + Delta-G solvation = -103.028644 kcal Electronic energy + Delta-G solvation = -29404.848449 eV Core-core repulsion = 25513.931126 eV Total energy + Delta-G solvation = -3890.917323 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.83787 -37.69285 -36.80838 -35.38180 -34.92528 -34.28796 -33.89157 -30.19719 -30.08535 -29.85464 -28.39725 -26.04309 -25.53133 -24.18330 -22.25462 -21.78088 -21.03012 -19.34957 -18.69815 -18.02993 -17.19421 -16.42307 -16.03000 -15.72204 -15.42653 -15.24708 -14.75856 -14.70113 -14.34421 -14.11772 -13.87291 -13.52078 -13.39051 -13.23769 -12.63150 -12.27403 -12.11466 -11.99232 -11.88137 -11.78689 -11.69884 -11.62339 -11.45583 -11.40120 -11.38048 -11.25579 -11.05586 -10.97230 -10.92424 -10.68808 -10.64541 -10.22908 -9.97276 -9.79735 -9.51246 -9.38699 -8.58451 -8.07316 -7.74905 -6.97225 -4.58200 0.89644 2.14162 2.59746 2.96493 2.98221 3.04724 3.36310 3.78982 3.80605 4.21781 4.37211 4.59514 4.82815 4.88375 4.98300 5.09383 5.18295 5.34850 5.35756 5.36705 5.47454 5.58837 5.64931 5.72875 5.81532 5.92795 5.98822 6.00171 6.04104 6.10537 6.13292 6.18762 6.33090 6.41005 6.56148 6.60461 6.70344 6.71874 6.86878 6.99776 7.16699 7.32346 7.33285 7.67910 7.75873 7.89381 8.35412 8.62456 8.67033 9.98042 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011124 B = 0.005055 C = 0.004105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.381626 B = 5537.574628 C = 6819.778775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 C 0.104 3.896 4 C -0.181 4.181 5 C 0.103 3.897 6 N -1.001 6.001 7 S 2.684 3.316 8 O -0.972 6.972 9 O -0.968 6.968 10 C -0.630 4.630 11 C -0.149 4.149 12 C -0.120 4.120 13 C -0.118 4.118 14 C 0.095 3.905 15 C -0.460 4.460 16 H 0.082 0.918 17 C 0.077 3.923 18 N -0.793 5.793 19 Si 0.910 3.090 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.262 1.262 23 C -0.122 4.122 24 C 0.092 3.908 25 C 0.044 3.956 26 O -0.369 6.369 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.072 0.928 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.284 0.716 41 H 0.109 0.891 42 H 0.075 0.925 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.639 -4.510 9.578 10.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.145 4.145 3 C 0.063 3.937 4 C -0.238 4.238 5 C -0.023 4.023 6 N -0.838 5.838 7 S 2.782 3.218 8 O -0.963 6.963 9 O -0.959 6.959 10 C -0.723 4.723 11 C -0.170 4.170 12 C -0.139 4.139 13 C -0.137 4.137 14 C 0.091 3.909 15 C -0.489 4.489 16 H 0.100 0.900 17 C -0.142 4.142 18 N -0.418 5.418 19 Si 0.734 3.266 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.187 1.187 23 C -0.143 4.143 24 C -0.034 4.034 25 C -0.035 4.035 26 O -0.288 6.288 27 H 0.069 0.931 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.115 0.885 39 H 0.142 0.858 40 H 0.095 0.905 41 H 0.127 0.873 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.118 0.882 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.024 -4.555 9.765 10.824 hybrid contribution -0.779 0.314 -1.382 1.617 sum -1.803 -4.241 8.384 9.567 Atomic orbital electron populations 1.21768 0.95095 1.01205 1.02671 1.21466 0.97025 0.93372 1.02633 1.21885 0.92726 0.93663 0.85427 1.22488 1.01565 1.02074 0.97655 1.22057 0.94516 0.82219 1.03469 1.57877 1.66304 1.22455 1.37135 1.01907 0.73734 0.73087 0.73097 1.93502 1.71299 1.58071 1.73408 1.93517 1.71508 1.55645 1.75211 1.29770 1.21298 1.06259 1.14926 1.20039 1.03213 0.93185 1.00546 1.20794 0.99135 0.98336 0.95639 1.21620 1.00736 0.94283 0.97097 1.17643 0.90024 0.91569 0.91635 1.19577 1.07923 1.13912 1.07531 0.90002 1.25907 0.94826 0.93562 0.99860 1.69767 1.07406 1.27399 1.37183 0.86330 0.78410 0.80096 0.81791 1.18809 1.20238 1.18683 1.20709 1.02498 0.97990 0.93116 1.22024 0.95726 0.97499 0.88161 1.22962 0.93654 0.83991 1.02862 1.87922 1.79954 1.23495 1.37442 0.93083 0.92146 0.92095 0.90311 0.91272 0.90828 0.91596 0.90945 0.88343 0.90706 0.87809 0.88468 0.85848 0.90523 0.87304 0.90679 0.88506 0.88190 0.91649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 9.32 37.16 0.35 -1.32 16 2 C -0.11 -1.22 5.24 -26.73 -0.14 -1.36 16 3 C 0.10 1.40 0.80 -90.47 -0.07 1.33 16 4 C -0.18 -2.83 7.61 37.16 0.28 -2.55 16 5 C 0.10 1.46 5.24 -3.54 -0.02 1.44 16 6 N -1.00 -15.46 2.86 -113.07 -0.32 -15.78 16 7 S 2.68 50.88 5.70 -107.50 -0.61 50.27 16 8 O -0.97 -19.77 16.07 -57.17 -0.92 -20.69 16 9 O -0.97 -20.28 16.06 -57.17 -0.92 -21.19 16 10 C -0.63 -13.29 5.39 -39.66 -0.21 -13.51 16 11 C -0.15 -3.11 9.53 -39.29 -0.37 -3.49 16 12 C -0.12 -2.59 10.02 -39.66 -0.40 -2.99 16 13 C -0.12 -2.82 8.70 -38.87 -0.34 -3.16 16 14 C 0.09 2.34 5.57 -106.82 -0.60 1.74 16 15 C -0.46 -11.35 9.05 -37.74 -0.34 -11.69 16 16 H 0.08 1.95 7.91 -52.49 -0.41 1.54 16 17 C 0.08 1.79 5.14 -17.34 -0.09 1.70 16 18 N -0.79 -18.90 10.97 55.55 0.61 -18.29 16 19 Si 0.91 17.61 29.59 -169.99 -5.03 12.58 16 20 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 21 H -0.28 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 23 C -0.12 -2.78 9.26 -38.88 -0.36 -3.14 16 24 C 0.09 1.19 6.57 -3.53 -0.02 1.17 16 25 C 0.04 0.54 6.60 37.31 0.25 0.79 16 26 O -0.37 -5.02 9.77 -35.23 -0.34 -5.37 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 29 H 0.06 0.72 6.35 -51.93 -0.33 0.39 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.07 1.00 6.35 -51.93 -0.33 0.67 16 34 H 0.07 1.26 5.52 -51.93 -0.29 0.98 16 35 H 0.10 1.43 7.24 -51.93 -0.38 1.06 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 37 H 0.10 1.97 7.60 -52.49 -0.40 1.57 16 38 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.12 3.03 6.18 -52.49 -0.32 2.71 16 40 H 0.28 6.20 8.30 -40.82 -0.34 5.86 16 41 H 0.11 2.40 7.60 -52.49 -0.40 2.00 16 42 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 1.23 7.25 -51.93 -0.38 0.86 16 44 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.07 0.89 6.25 -51.93 -0.32 0.57 16 LS Contribution 365.78 15.07 5.51 5.51 Total: -1.00 -28.61 365.78 -10.60 -39.20 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: -6.48 Total: 8.78 kcal Atomic # 6 Polarization: -32.94 SS G_CDS: -2.09 Total: -35.03 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: 0.29 Total: -34.07 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -2.18 Total: -47.25 kcal Atomic # 14 Polarization: 17.61 SS G_CDS: -5.03 Total: 12.58 kcal Atomic # 16 Polarization: 50.88 SS G_CDS: -0.61 Total: 50.27 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -28.61 -10.60 -39.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619498953.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.826 kcal (2) G-P(sol) polarization free energy of solvation -28.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.597 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds