Wall clock time and date at job start Sat Apr 11 2020 05:38:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 113.99911 * 2 1 4 4 C 1.53000 * 109.49922 * 59.93938 * 3 2 1 5 5 C 1.53038 * 109.52758 * 299.85437 * 3 2 1 6 6 C 1.53034 * 109.54119 * 178.66644 * 5 3 2 7 7 C 1.52758 * 109.38365 * 61.24094 * 6 5 3 8 8 N 1.46926 * 109.01147 * 305.58928 * 7 6 5 9 9 S 1.65597 * 120.63105 * 233.58741 * 8 7 6 10 10 O 1.42095 * 106.40294 * 156.17515 * 9 8 7 11 11 O 1.42100 * 106.40532 * 23.25293 * 9 8 7 12 12 C 1.76200 * 107.21508 * 269.71414 * 9 8 7 13 13 C 1.38659 * 119.87756 * 90.00053 * 12 9 8 14 14 C 1.38607 * 120.50431 * 180.29434 * 13 12 9 15 15 C 1.37638 * 120.24773 * 359.45020 * 14 13 12 16 16 C 1.40701 * 119.74192 * 0.54467 * 15 14 13 17 17 C 1.41395 * 120.24284 * 179.70518 * 16 15 14 18 18 H 1.08005 * 120.00210 * 204.41126 * 17 16 15 19 19 C 1.39952 * 120.00226 * 24.40808 * 17 16 15 20 20 N 1.30822 * 119.99514 * 17.86316 * 19 17 16 21 21 Si 1.86793 * 120.00118 * 197.85934 * 19 17 16 22 22 H 1.48497 * 109.47132 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47073 * 120.00240 * 21 19 17 24 24 H 1.48502 * 109.47379 * 240.00115 * 21 19 17 25 25 C 1.37599 * 119.87587 * 270.02049 * 12 9 8 26 26 C 1.46921 * 118.73519 * 53.30432 * 8 7 6 27 27 H 1.08994 * 109.47363 * 59.99808 * 1 2 3 28 28 H 1.08995 * 109.47426 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47301 * 299.99773 * 1 2 3 30 30 H 1.09001 * 109.47562 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46796 * 300.06150 * 4 3 2 32 32 H 1.08995 * 109.47233 * 60.05843 * 4 3 2 33 33 H 1.09001 * 109.45742 * 298.69060 * 5 3 2 34 34 H 1.09004 * 109.45601 * 58.64390 * 5 3 2 35 35 H 1.09005 * 109.49825 * 181.31870 * 6 5 3 36 36 H 1.08996 * 109.50160 * 301.41361 * 6 5 3 37 37 H 1.08997 * 109.51096 * 185.70145 * 7 6 5 38 38 H 1.09002 * 109.43374 * 65.42358 * 7 6 5 39 39 H 1.08001 * 119.74575 * 0.02562 * 13 12 9 40 40 H 1.08001 * 119.87846 * 179.72199 * 14 13 12 41 41 H 1.08000 * 120.13258 * 180.30180 * 15 14 13 42 42 H 0.97005 * 119.99888 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.12615 * 359.95738 * 25 12 9 44 44 H 1.09001 * 109.59020 * 66.43806 * 26 8 7 45 45 H 1.08998 * 109.58513 * 186.71706 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5579 2.0659 1.2483 5 6 1.5623 2.0648 -1.2509 6 6 2.1577 3.4745 -1.2347 7 6 3.6824 3.3810 -1.2455 8 7 4.1176 2.5288 -0.1305 9 16 5.2354 3.0750 0.9625 10 8 5.0319 2.3260 2.1528 11 8 5.1799 4.4942 0.9182 12 6 6.8251 2.6200 0.3540 13 6 7.5195 3.4846 -0.4785 14 6 8.7683 3.1373 -0.9695 15 6 9.3379 1.9324 -0.6257 16 6 8.6425 1.0471 0.2183 17 6 9.2151 -0.1961 0.5732 18 1 8.5801 -1.0188 0.8671 19 6 10.6046 -0.3605 0.5436 20 7 11.3872 0.6877 0.5353 21 14 11.3416 -2.0767 0.5161 22 1 10.2507 -3.0842 0.5305 23 1 12.1553 -2.2463 -0.7145 24 1 12.2048 -2.2640 1.7099 25 6 7.3728 1.4079 0.7063 26 6 3.5374 1.1853 0.0000 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 2.0010 3.0617 1.2476 31 1 0.4712 2.1512 1.2478 32 1 1.8795 1.5262 2.1389 33 1 1.9062 1.5355 -2.1396 34 1 0.4743 2.1303 -1.2659 35 1 1.8194 4.0225 -2.1141 36 1 1.8341 3.9958 -0.3338 37 1 4.1091 4.3775 -1.1319 38 1 4.0124 2.9453 -2.1886 39 1 7.0820 4.4341 -0.7498 40 1 9.2983 3.8165 -1.6208 41 1 10.3131 1.6658 -1.0055 42 1 12.3503 0.5738 0.5152 43 1 6.8304 0.7361 1.3551 44 1 3.8552 0.5669 -0.8395 45 1 3.8704 0.7326 0.9339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619501500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:23 Heat of formation + Delta-G solvation = -101.007142 kcal Electronic energy + Delta-G solvation = -28516.498640 eV Core-core repulsion = 24625.668976 eV Total energy + Delta-G solvation = -3890.829664 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.93507 -37.63453 -36.86262 -36.67881 -35.32977 -33.84332 -32.34925 -31.30885 -30.07675 -29.78621 -27.66200 -26.68925 -25.48409 -24.39230 -22.66930 -21.84994 -20.98001 -19.55137 -18.54990 -17.86998 -17.39156 -16.40975 -15.99668 -15.88438 -15.48686 -15.35170 -15.05196 -14.71988 -14.45985 -14.16947 -13.75168 -13.63271 -13.42338 -13.33034 -12.99839 -12.59916 -12.40774 -12.09687 -12.04636 -11.92519 -11.65058 -11.62597 -11.58209 -11.41183 -11.35721 -11.22085 -11.03700 -10.98053 -10.87858 -10.77923 -10.58248 -10.53552 -9.77159 -9.63404 -9.58959 -9.35119 -8.81460 -8.03190 -7.70363 -6.92100 -4.52983 0.90869 2.19203 2.62767 3.01066 3.04410 3.07847 3.30370 3.71981 3.83872 4.23937 4.39995 4.50196 4.65676 4.77976 4.82540 4.97038 5.06544 5.14404 5.19610 5.21363 5.38039 5.41858 5.48038 5.55426 5.63166 5.71350 5.76665 5.80259 5.87363 5.98843 6.01463 6.04181 6.15057 6.18653 6.30121 6.60780 6.65742 6.76677 6.91276 7.04844 7.12224 7.22004 7.38196 7.72315 7.80967 7.94457 8.40630 8.67380 8.72113 10.03526 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.003584 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.115108 B = 7810.455675 C = 8824.432107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.376 6.376 3 C 0.105 3.895 4 C -0.181 4.181 5 C -0.141 4.141 6 C -0.131 4.131 7 C 0.116 3.884 8 N -0.996 5.996 9 S 2.686 3.314 10 O -0.965 6.965 11 O -0.972 6.972 12 C -0.631 4.631 13 C -0.148 4.148 14 C -0.121 4.121 15 C -0.118 4.118 16 C 0.092 3.908 17 C -0.460 4.460 18 H 0.084 0.916 19 C 0.075 3.925 20 N -0.793 5.793 21 Si 0.911 3.089 22 H -0.258 1.258 23 H -0.271 1.271 24 H -0.273 1.273 25 C -0.126 4.126 26 C 0.136 3.864 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.044 0.956 30 H 0.069 0.931 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.071 0.929 37 H 0.096 0.904 38 H 0.071 0.929 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.283 0.717 43 H 0.111 0.889 44 H 0.079 0.921 45 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.288 1.464 -5.010 17.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.294 6.294 3 C 0.064 3.936 4 C -0.238 4.238 5 C -0.179 4.179 6 C -0.170 4.170 7 C -0.009 4.009 8 N -0.833 5.833 9 S 2.784 3.216 10 O -0.956 6.956 11 O -0.962 6.962 12 C -0.723 4.723 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.088 3.912 17 C -0.489 4.489 18 H 0.102 0.898 19 C -0.144 4.144 20 N -0.418 5.418 21 Si 0.735 3.265 22 H -0.182 1.182 23 H -0.196 1.196 24 H -0.198 1.198 25 C -0.147 4.147 26 C 0.010 3.990 27 H 0.061 0.939 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.096 0.904 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.089 0.911 39 H 0.123 0.877 40 H 0.116 0.884 41 H 0.143 0.857 42 H 0.094 0.906 43 H 0.129 0.871 44 H 0.097 0.903 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -16.147 1.816 -4.209 16.785 hybrid contribution 0.801 -0.760 -0.499 1.212 sum -15.346 1.056 -4.709 16.087 Atomic orbital electron populations 1.22766 0.81563 1.02517 1.00114 1.87935 1.19456 1.26975 1.95037 1.21723 0.94156 0.83189 0.94531 1.22463 1.01296 1.01653 0.98422 1.22092 1.00663 0.96540 0.98572 1.21852 0.95622 0.96552 1.02955 1.21365 0.94737 0.95173 0.89623 1.57746 1.57270 1.23983 1.44302 1.01828 0.73735 0.73080 0.72965 1.93522 1.85917 1.72837 1.43301 1.93497 1.87301 1.28931 1.86487 1.29766 1.21198 1.05569 1.15760 1.20061 0.96851 0.98082 1.01930 1.20808 0.95303 0.97306 1.00618 1.21649 1.00521 0.94116 0.97494 1.17685 0.90757 0.93098 0.89638 1.19652 0.91671 0.97586 1.39983 0.89839 1.25946 0.97412 0.98970 0.92024 1.69793 1.05872 1.31385 1.34792 0.86202 0.79491 0.82089 0.78679 1.18183 1.19613 1.19828 1.20749 0.98695 0.94162 1.01090 1.21099 0.90166 0.83146 1.04550 0.93910 0.89768 0.93779 0.91220 0.92212 0.91021 0.90752 0.91494 0.90439 0.91000 0.88571 0.91092 0.87693 0.88368 0.85714 0.90598 0.87054 0.90287 0.87905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 10.21 101.05 1.03 1.27 16 2 O -0.38 -4.63 10.35 -35.23 -0.36 -4.99 16 3 C 0.10 1.27 0.88 -90.50 -0.08 1.19 16 4 C -0.18 -2.15 7.76 37.16 0.29 -1.86 16 5 C -0.14 -1.39 4.54 -26.69 -0.12 -1.51 16 6 C -0.13 -1.28 5.72 -26.84 -0.15 -1.43 16 7 C 0.12 1.41 6.45 -3.93 -0.03 1.38 16 8 N -1.00 -14.86 2.73 -113.77 -0.31 -15.17 16 9 S 2.69 51.12 5.73 -107.50 -0.62 50.50 16 10 O -0.97 -20.32 15.86 -57.17 -0.91 -21.23 16 11 O -0.97 -19.63 15.85 -57.17 -0.91 -20.53 16 12 C -0.63 -13.91 5.97 -39.66 -0.24 -14.15 16 13 C -0.15 -3.23 9.53 -39.29 -0.37 -3.60 16 14 C -0.12 -2.72 10.02 -39.66 -0.40 -3.12 16 15 C -0.12 -2.94 8.70 -38.87 -0.34 -3.28 16 16 C 0.09 2.38 5.57 -106.82 -0.60 1.78 16 17 C -0.46 -11.82 9.05 -37.74 -0.34 -12.16 16 18 H 0.08 2.06 7.91 -52.48 -0.41 1.64 16 19 C 0.07 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -19.84 10.95 55.55 0.61 -19.23 16 21 Si 0.91 18.08 29.59 -169.99 -5.03 13.05 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 24 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 25 C -0.13 -3.04 9.26 -38.87 -0.36 -3.40 16 26 C 0.14 1.93 5.52 -3.71 -0.02 1.91 16 27 H 0.04 0.32 6.39 -51.93 -0.33 -0.01 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.36 6.42 -51.92 -0.33 0.02 16 30 H 0.07 0.86 5.97 -51.93 -0.31 0.55 16 31 H 0.06 0.57 6.54 -51.93 -0.34 0.23 16 32 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.56 6.48 -51.93 -0.34 0.22 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.72 6.33 -51.93 -0.33 0.40 16 37 H 0.10 1.19 6.91 -51.93 -0.36 0.83 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.11 2.04 7.60 -52.49 -0.40 1.65 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.13 3.16 6.15 -52.49 -0.32 2.83 16 42 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 43 H 0.11 2.58 7.60 -52.49 -0.40 2.18 16 44 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.10 1.58 6.92 -51.93 -0.36 1.23 16 LS Contribution 363.15 15.07 5.47 5.47 Total: -1.00 -30.19 363.15 -10.19 -40.38 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -6.33 Total: 6.99 kcal Atomic # 6 Polarization: -33.44 SS G_CDS: -1.81 Total: -35.25 kcal Atomic # 7 Polarization: -34.69 SS G_CDS: 0.30 Total: -34.40 kcal Atomic # 8 Polarization: -44.58 SS G_CDS: -2.18 Total: -46.75 kcal Atomic # 14 Polarization: 18.08 SS G_CDS: -5.03 Total: 13.05 kcal Atomic # 16 Polarization: 51.12 SS G_CDS: -0.62 Total: 50.50 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.19 -10.19 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619501500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.623 kcal (2) G-P(sol) polarization free energy of solvation -30.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.194 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds