Wall clock time and date at job start Sat Apr 11 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42903 * 113.99911 * 2 1 4 4 C 1.53000 * 109.49922 * 59.93938 * 3 2 1 5 5 C 1.53038 * 109.52758 * 299.85437 * 3 2 1 6 6 C 1.53034 * 109.54119 * 178.66644 * 5 3 2 7 7 C 1.52758 * 109.38365 * 61.24094 * 6 5 3 8 8 N 1.46926 * 109.01147 * 305.58928 * 7 6 5 9 9 S 1.65597 * 120.63105 * 233.58741 * 8 7 6 10 10 O 1.42095 * 106.40294 * 156.17515 * 9 8 7 11 11 O 1.42100 * 106.40532 * 23.25293 * 9 8 7 12 12 C 1.76200 * 107.21508 * 269.71414 * 9 8 7 13 13 C 1.38659 * 119.87756 * 90.00053 * 12 9 8 14 14 C 1.38607 * 120.50431 * 180.29434 * 13 12 9 15 15 C 1.37638 * 120.24773 * 359.45020 * 14 13 12 16 16 C 1.40701 * 119.74192 * 0.54467 * 15 14 13 17 17 C 1.41395 * 120.24284 * 179.70518 * 16 15 14 18 18 H 1.08005 * 120.00210 * 204.41126 * 17 16 15 19 19 C 1.39952 * 120.00226 * 24.40808 * 17 16 15 20 20 N 1.30822 * 119.99514 * 17.86316 * 19 17 16 21 21 Si 1.86793 * 120.00118 * 197.85934 * 19 17 16 22 22 H 1.48497 * 109.47132 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47073 * 120.00240 * 21 19 17 24 24 H 1.48502 * 109.47379 * 240.00115 * 21 19 17 25 25 C 1.37599 * 119.87587 * 270.02049 * 12 9 8 26 26 C 1.46921 * 118.73519 * 53.30432 * 8 7 6 27 27 H 1.08994 * 109.47363 * 59.99808 * 1 2 3 28 28 H 1.08995 * 109.47426 * 180.02562 * 1 2 3 29 29 H 1.09007 * 109.47301 * 299.99773 * 1 2 3 30 30 H 1.09001 * 109.47562 * 180.02562 * 4 3 2 31 31 H 1.09001 * 109.46796 * 300.06150 * 4 3 2 32 32 H 1.08995 * 109.47233 * 60.05843 * 4 3 2 33 33 H 1.09001 * 109.45742 * 298.69060 * 5 3 2 34 34 H 1.09004 * 109.45601 * 58.64390 * 5 3 2 35 35 H 1.09005 * 109.49825 * 181.31870 * 6 5 3 36 36 H 1.08996 * 109.50160 * 301.41361 * 6 5 3 37 37 H 1.08997 * 109.51096 * 185.70145 * 7 6 5 38 38 H 1.09002 * 109.43374 * 65.42358 * 7 6 5 39 39 H 1.08001 * 119.74575 * 0.02562 * 13 12 9 40 40 H 1.08001 * 119.87846 * 179.72199 * 14 13 12 41 41 H 1.08000 * 120.13258 * 180.30180 * 15 14 13 42 42 H 0.97005 * 119.99888 * 179.97438 * 20 19 17 43 43 H 1.07994 * 120.12615 * 359.95738 * 25 12 9 44 44 H 1.09001 * 109.59020 * 66.43806 * 26 8 7 45 45 H 1.08998 * 109.58513 * 186.71706 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 1.5579 2.0659 1.2483 5 6 1.5623 2.0648 -1.2509 6 6 2.1577 3.4745 -1.2347 7 6 3.6824 3.3810 -1.2455 8 7 4.1176 2.5288 -0.1305 9 16 5.2354 3.0750 0.9625 10 8 5.0319 2.3260 2.1528 11 8 5.1799 4.4942 0.9182 12 6 6.8251 2.6200 0.3540 13 6 7.5195 3.4846 -0.4785 14 6 8.7683 3.1373 -0.9695 15 6 9.3379 1.9324 -0.6257 16 6 8.6425 1.0471 0.2183 17 6 9.2151 -0.1961 0.5732 18 1 8.5801 -1.0188 0.8671 19 6 10.6046 -0.3605 0.5436 20 7 11.3872 0.6877 0.5353 21 14 11.3416 -2.0767 0.5161 22 1 10.2507 -3.0842 0.5305 23 1 12.1553 -2.2463 -0.7145 24 1 12.2048 -2.2640 1.7099 25 6 7.3728 1.4079 0.7063 26 6 3.5374 1.1853 0.0000 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5138 0.8901 30 1 2.0010 3.0617 1.2476 31 1 0.4712 2.1512 1.2478 32 1 1.8795 1.5262 2.1389 33 1 1.9062 1.5355 -2.1396 34 1 0.4743 2.1303 -1.2659 35 1 1.8194 4.0225 -2.1141 36 1 1.8341 3.9958 -0.3338 37 1 4.1091 4.3775 -1.1319 38 1 4.0124 2.9453 -2.1886 39 1 7.0820 4.4341 -0.7498 40 1 9.2983 3.8165 -1.6208 41 1 10.3131 1.6658 -1.0055 42 1 12.3503 0.5738 0.5152 43 1 6.8304 0.7361 1.3551 44 1 3.8552 0.5669 -0.8395 45 1 3.8704 0.7326 0.9339 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619501500.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:22 Heat of formation + Delta-G solvation = -119.953984 kcal Electronic energy + Delta-G solvation = -28517.320237 eV Core-core repulsion = 24625.668976 eV Total energy + Delta-G solvation = -3891.651261 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.85532 -39.46067 -38.39261 -37.72155 -36.95369 -35.68532 -33.34281 -32.23911 -31.93192 -31.59901 -28.53582 -27.49461 -27.35515 -25.43095 -23.66030 -23.56786 -22.80138 -20.71797 -20.06240 -19.15839 -18.82137 -17.79996 -17.39304 -17.20157 -16.88197 -16.49772 -16.34364 -16.24643 -15.66087 -15.25382 -15.16510 -15.07221 -14.63008 -14.48034 -14.33016 -13.96368 -13.73634 -13.42986 -13.31676 -13.20771 -13.11327 -13.08151 -13.03846 -12.92319 -12.85469 -12.60660 -12.57564 -12.24932 -12.19774 -11.80032 -11.70199 -11.55665 -11.44836 -11.34630 -11.15817 -10.41649 -10.01792 -9.83700 -9.58073 -8.74610 -6.46817 -0.61506 0.38452 0.82293 1.36864 1.43909 1.52520 1.95342 2.17442 2.53974 2.65466 2.86553 3.37614 3.46839 3.57210 3.77784 3.90041 4.03579 4.14922 4.22613 4.28435 4.41815 4.46838 4.51577 4.59471 4.62517 4.69746 4.78658 4.81300 4.83035 4.88433 4.89982 4.94134 5.00356 5.05749 5.11744 5.16981 5.17558 5.20395 5.39028 5.44929 5.53828 5.60325 5.86646 5.92217 6.08988 6.30205 6.51016 6.78182 6.83040 8.23831 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015172 B = 0.003584 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.115108 B = 7810.455675 C = 8824.432107 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.399 6.399 3 C 0.106 3.894 4 C -0.183 4.183 5 C -0.136 4.136 6 C -0.126 4.126 7 C 0.103 3.897 8 N -0.985 5.985 9 S 2.711 3.289 10 O -0.990 6.990 11 O -0.979 6.979 12 C -0.640 4.640 13 C -0.148 4.148 14 C -0.122 4.122 15 C -0.141 4.141 16 C 0.063 3.937 17 C -0.498 4.498 18 H 0.079 0.921 19 C 0.036 3.964 20 N -0.824 5.824 21 Si 0.985 3.015 22 H -0.258 1.258 23 H -0.260 1.260 24 H -0.266 1.266 25 C -0.148 4.148 26 C 0.129 3.871 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.070 0.930 37 H 0.095 0.905 38 H 0.086 0.914 39 H 0.133 0.867 40 H 0.129 0.871 41 H 0.114 0.886 42 H 0.292 0.708 43 H 0.107 0.893 44 H 0.083 0.917 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.133 1.925 -6.510 19.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.318 6.318 3 C 0.066 3.934 4 C -0.240 4.240 5 C -0.174 4.174 6 C -0.165 4.165 7 C -0.021 4.021 8 N -0.825 5.825 9 S 2.805 3.195 10 O -0.980 6.980 11 O -0.970 6.970 12 C -0.729 4.729 13 C -0.169 4.169 14 C -0.141 4.141 15 C -0.161 4.161 16 C 0.060 3.940 17 C -0.527 4.527 18 H 0.098 0.902 19 C -0.179 4.179 20 N -0.449 5.449 21 Si 0.805 3.195 22 H -0.181 1.181 23 H -0.184 1.184 24 H -0.191 1.191 25 C -0.169 4.169 26 C 0.003 3.997 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.103 0.897 32 H 0.071 0.929 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.127 0.873 36 H 0.088 0.912 37 H 0.113 0.887 38 H 0.104 0.896 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.125 0.875 44 H 0.101 0.899 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -17.965 2.291 -5.720 18.993 hybrid contribution 1.237 -0.825 -0.049 1.488 sum -16.728 1.466 -5.769 17.755 Atomic orbital electron populations 1.22995 0.79635 1.03765 1.01231 1.87900 1.21573 1.27077 1.95259 1.21646 0.92282 0.83653 0.95869 1.22483 1.02939 1.00899 0.97676 1.22078 1.02062 0.96052 0.97167 1.21871 0.93380 0.96888 1.04386 1.21754 0.96824 0.94589 0.88916 1.57418 1.55684 1.24756 1.44669 1.01072 0.73003 0.72521 0.72856 1.93487 1.85944 1.73353 1.45209 1.93477 1.87289 1.29393 1.86818 1.30321 1.23222 1.04523 1.14790 1.20471 0.96504 0.98887 1.01030 1.21161 0.95665 0.96803 1.00475 1.21664 1.00516 0.95394 0.98494 1.18045 0.91768 0.93830 0.90370 1.19902 0.92910 0.97860 1.42011 0.90241 1.26785 0.97140 1.03040 0.90938 1.69827 1.06580 1.33461 1.35072 0.85115 0.78518 0.76728 0.79142 1.18134 1.18420 1.19075 1.20810 0.98686 0.95400 1.01978 1.21207 0.92372 0.82472 1.03647 0.92169 0.88646 0.93147 0.91838 0.89666 0.92926 0.90390 0.89195 0.87296 0.91166 0.88651 0.89564 0.84896 0.85314 0.86769 0.89693 0.87496 0.89893 0.90084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.29 10.21 113.37 1.16 1.45 16 2 O -0.40 -9.26 10.35 -148.98 -1.54 -10.80 16 3 C 0.11 2.41 0.88 -10.72 -0.01 2.40 16 4 C -0.18 -4.10 7.76 71.98 0.56 -3.54 16 5 C -0.14 -2.23 4.54 30.62 0.14 -2.09 16 6 C -0.13 -2.03 5.72 30.52 0.17 -1.86 16 7 C 0.10 2.26 6.45 86.22 0.56 2.81 16 8 N -0.99 -28.63 2.73 -513.86 -1.40 -30.03 16 9 S 2.71 103.22 5.73 -56.49 -0.32 102.89 16 10 O -0.99 -42.80 15.86 -128.00 -2.03 -44.83 16 11 O -0.98 -38.55 15.85 -128.00 -2.03 -40.58 16 12 C -0.64 -28.58 5.97 22.22 0.13 -28.45 16 13 C -0.15 -6.36 9.53 22.46 0.21 -6.15 16 14 C -0.12 -5.46 10.02 22.22 0.22 -5.24 16 15 C -0.14 -7.24 8.70 22.73 0.20 -7.04 16 16 C 0.06 3.41 5.57 -21.29 -0.12 3.30 16 17 C -0.50 -26.78 9.05 23.46 0.21 -26.57 16 18 H 0.08 4.15 7.91 -2.91 -0.02 4.12 16 19 C 0.04 1.81 5.14 85.26 0.44 2.24 16 20 N -0.82 -42.23 10.95 21.83 0.24 -41.99 16 21 Si 0.98 37.57 29.59 68.60 2.03 39.60 16 22 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 24 H -0.27 -9.78 7.11 99.48 0.71 -9.07 16 25 C -0.15 -7.45 9.26 22.73 0.21 -7.24 16 26 C 0.13 3.64 5.52 86.36 0.48 4.11 16 27 H 0.06 0.69 6.39 -2.39 -0.02 0.67 16 28 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.05 0.68 6.42 -2.38 -0.02 0.67 16 30 H 0.06 1.49 5.97 -2.39 -0.01 1.47 16 31 H 0.08 1.43 6.54 -2.39 -0.02 1.41 16 32 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.09 1.10 6.48 -2.39 -0.02 1.09 16 35 H 0.11 1.14 8.14 -2.38 -0.02 1.13 16 36 H 0.07 1.19 6.33 -2.39 -0.02 1.17 16 37 H 0.10 2.13 6.91 -2.39 -0.02 2.11 16 38 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.13 4.90 7.60 -2.91 -0.02 4.87 16 40 H 0.13 4.84 8.06 -2.91 -0.02 4.82 16 41 H 0.11 6.00 6.15 -2.91 -0.02 5.98 16 42 H 0.29 13.38 8.30 -92.70 -0.77 12.62 16 43 H 0.11 5.30 7.60 -2.91 -0.02 5.27 16 44 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 45 H 0.08 2.62 6.92 -2.39 -0.02 2.61 16 Total: -1.00 -67.21 363.15 0.51 -66.71 By element: Atomic # 1 Polarization: 29.90 SS G_CDS: 1.00 Total: 30.90 kcal Atomic # 6 Polarization: -76.43 SS G_CDS: 4.56 Total: -71.86 kcal Atomic # 7 Polarization: -70.85 SS G_CDS: -1.17 Total: -72.02 kcal Atomic # 8 Polarization: -90.61 SS G_CDS: -5.60 Total: -96.21 kcal Atomic # 14 Polarization: 37.57 SS G_CDS: 2.03 Total: 39.60 kcal Atomic # 16 Polarization: 103.22 SS G_CDS: -0.32 Total: 102.89 kcal Total: -67.21 0.51 -66.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619501500.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.248 kcal (2) G-P(sol) polarization free energy of solvation -67.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.460 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds