Wall clock time and date at job start Sat Apr 11 2020 05:38:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.49562 * 2 1 4 4 C 1.52568 * 109.48992 * 120.04897 * 2 1 3 5 5 C 1.47090 * 114.32740 * 204.99668 * 4 2 1 6 6 C 1.54862 * 110.32253 * 297.19717 * 5 4 2 7 7 N 1.44581 * 109.60174 * 71.26737 * 6 5 4 8 8 S 1.65604 * 118.64326 * 89.24629 * 7 6 5 9 9 O 1.42106 * 106.40360 * 336.46264 * 8 7 6 10 10 O 1.42101 * 106.40342 * 203.54497 * 8 7 6 11 11 C 1.76202 * 107.21789 * 90.00262 * 8 7 6 12 12 C 1.38655 * 119.87106 * 89.99532 * 11 8 7 13 13 C 1.38617 * 120.49951 * 179.97438 * 12 11 8 14 14 C 1.37638 * 120.24678 * 0.02740 * 13 12 11 15 15 C 1.40704 * 119.74614 * 359.97438 * 14 13 12 16 16 C 1.41397 * 120.24401 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99864 * 204.39224 * 16 15 14 18 18 C 1.39938 * 119.99821 * 24.40268 * 16 15 14 19 19 N 1.30820 * 120.00783 * 17.84974 * 18 16 15 20 20 Si 1.86801 * 119.99632 * 197.85625 * 18 16 15 21 21 H 1.48500 * 109.47276 * 89.99721 * 20 18 16 22 22 H 1.48500 * 109.47114 * 209.99537 * 20 18 16 23 23 H 1.48498 * 109.47137 * 329.99824 * 20 18 16 24 24 C 1.37593 * 119.87330 * 269.72305 * 11 8 7 25 25 C 1.47601 * 122.71425 * 269.53370 * 7 6 5 26 26 C 1.50887 * 109.50566 * 239.94199 * 2 1 3 27 27 H 1.09003 * 109.47008 * 299.95497 * 1 2 3 28 28 H 1.09002 * 109.46944 * 59.95231 * 1 2 3 29 29 H 1.08994 * 109.47705 * 179.97438 * 1 2 3 30 30 H 0.96701 * 113.99670 * 60.04103 * 3 2 1 31 31 H 1.09006 * 108.51110 * 83.74350 * 4 2 1 32 32 H 1.09000 * 108.38588 * 326.16335 * 4 2 1 33 33 H 1.08999 * 109.32924 * 176.93628 * 5 4 2 34 34 H 1.09002 * 109.18859 * 57.37017 * 5 4 2 35 35 H 1.08996 * 109.45344 * 311.22320 * 6 5 4 36 36 H 1.09009 * 109.42756 * 191.29128 * 6 5 4 37 37 H 1.08001 * 119.75267 * 0.02562 * 12 11 8 38 38 H 1.08001 * 119.87923 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.12897 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00748 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.12959 * 0.02562 * 24 11 8 42 42 H 1.08991 * 108.94936 * 162.55676 * 25 7 6 43 43 H 1.08996 * 108.94477 * 281.18583 * 25 7 6 44 44 H 1.08998 * 109.36636 * 268.32461 * 26 2 1 45 45 H 1.08997 * 109.36893 * 27.94928 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0069 1.3471 0.0000 4 6 2.0390 -0.7202 1.2450 5 6 3.3863 -0.3130 1.6722 6 6 4.4253 -0.6594 0.5773 7 7 4.2523 0.2256 -0.5528 8 16 5.0802 1.6597 -0.5721 9 8 5.3769 1.9700 0.7826 10 8 4.3536 2.5310 -1.4278 11 6 6.6255 1.3593 -1.3637 12 6 6.7388 1.5114 -2.7372 13 6 7.9483 1.2790 -3.3733 14 6 9.0514 0.8935 -2.6460 15 6 8.9480 0.7361 -1.2516 16 6 10.0744 0.3399 -0.4942 17 1 9.9391 -0.1531 0.4571 18 6 11.3643 0.5869 -0.9771 19 7 11.5503 1.4694 -1.9248 20 14 12.8209 -0.3436 -0.2687 21 1 13.0372 -1.5905 -1.0457 22 1 14.0365 0.5057 -0.3472 23 1 12.5470 -0.6858 1.1502 24 6 7.7164 0.9802 -0.6158 25 6 3.3636 -0.0936 -1.6873 26 6 2.0338 -0.7124 -1.2310 27 1 -0.3633 0.5131 0.8904 28 1 -0.3633 0.5146 -0.8896 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7222 1.8650 0.7654 31 1 2.0482 -1.7918 1.0454 32 1 1.3437 -0.5275 2.0620 33 1 3.6456 -0.8345 2.5935 34 1 3.3957 0.7621 1.8513 35 1 4.2834 -1.6911 0.2556 36 1 5.4308 -0.5402 0.9810 37 1 5.8785 1.8139 -3.3158 38 1 8.0254 1.4009 -4.4437 39 1 9.9926 0.7126 -3.1436 40 1 12.4445 1.6409 -2.2593 41 1 7.6268 0.8663 0.4544 42 1 3.1562 0.8210 -2.2426 43 1 3.8703 -0.7986 -2.3462 44 1 2.1828 -1.7676 -1.0024 45 1 1.2982 -0.6178 -2.0298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619502858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:28 Heat of formation + Delta-G solvation = -106.377955 kcal Electronic energy + Delta-G solvation = -28920.617344 eV Core-core repulsion = 25029.554784 eV Total energy + Delta-G solvation = -3891.062560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.76396 -37.57061 -36.54002 -35.73016 -35.03105 -33.79687 -32.97932 -32.53802 -30.02477 -29.71590 -28.60473 -25.82014 -25.42457 -23.81480 -21.78271 -21.12464 -20.92655 -20.12876 -18.48793 -17.57106 -16.99246 -16.54132 -16.24665 -15.90810 -15.35881 -15.04007 -14.62923 -14.60176 -14.22467 -13.93960 -13.60171 -13.36140 -13.30949 -13.11636 -12.64227 -12.55003 -12.36608 -12.12251 -11.99394 -11.86041 -11.45927 -11.42579 -11.36187 -11.27210 -11.21285 -11.00639 -10.96623 -10.82600 -10.78687 -10.56525 -10.52382 -10.35386 -9.92016 -9.69973 -9.49760 -9.31756 -8.51616 -7.96097 -7.65195 -6.88260 -4.49495 1.19672 2.28769 2.67219 3.01748 3.05628 3.09255 3.65719 3.85542 4.15080 4.41905 4.52153 4.59743 4.66827 4.78533 4.98795 5.02495 5.16995 5.26385 5.32334 5.43745 5.45453 5.53241 5.67005 5.68200 5.76232 5.83389 5.88340 5.95565 5.99572 6.07921 6.11454 6.20428 6.24385 6.41273 6.46651 6.70089 6.81041 6.88914 7.06565 7.17423 7.28840 7.45141 7.72610 7.78205 7.85028 7.99273 8.44569 8.71350 8.76761 10.07433 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.003389 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.666840 B = 8260.021811 C = 8774.306475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.136 3.864 3 O -0.545 6.545 4 C -0.141 4.141 5 C -0.138 4.138 6 C 0.130 3.870 7 N -0.977 5.977 8 S 2.695 3.305 9 O -0.974 6.974 10 O -0.968 6.968 11 C -0.639 4.639 12 C -0.147 4.147 13 C -0.122 4.122 14 C -0.120 4.120 15 C 0.091 3.909 16 C -0.462 4.462 17 H 0.082 0.918 18 C 0.075 3.925 19 N -0.795 5.795 20 Si 0.912 3.088 21 H -0.267 1.267 22 H -0.277 1.277 23 H -0.261 1.261 24 C -0.128 4.128 25 C 0.132 3.868 26 C -0.115 4.115 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.370 0.630 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.073 0.927 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.124 0.876 40 H 0.283 0.717 41 H 0.110 0.890 42 H 0.095 0.905 43 H 0.057 0.943 44 H 0.075 0.925 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.194 -6.812 2.735 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.095 3.905 3 O -0.350 6.350 4 C -0.179 4.179 5 C -0.177 4.177 6 C 0.003 3.997 7 N -0.813 5.813 8 S 2.791 3.209 9 O -0.964 6.964 10 O -0.958 6.958 11 C -0.729 4.729 12 C -0.168 4.168 13 C -0.142 4.142 14 C -0.139 4.139 15 C 0.088 3.912 16 C -0.492 4.492 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.420 5.420 20 Si 0.736 3.264 21 H -0.192 1.192 22 H -0.202 1.202 23 H -0.184 1.184 24 C -0.149 4.149 25 C 0.007 3.993 26 C -0.154 4.154 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.082 0.918 30 H 0.217 0.783 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.123 0.877 38 H 0.116 0.884 39 H 0.142 0.858 40 H 0.094 0.906 41 H 0.128 0.872 42 H 0.114 0.886 43 H 0.076 0.924 44 H 0.093 0.907 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -16.061 -6.133 2.387 17.357 hybrid contribution 1.006 -0.642 0.450 1.275 sum -15.055 -6.775 2.837 16.751 Atomic orbital electron populations 1.22555 0.95945 1.02310 1.02476 1.20593 0.91721 0.83266 0.94948 1.86718 1.76670 1.22631 1.49011 1.21167 0.97859 1.00981 0.97860 1.21207 0.94654 1.03325 0.98502 1.21107 0.98958 0.94233 0.85380 1.56915 1.57404 1.39176 1.27810 1.01653 0.73356 0.72517 0.73388 1.93489 1.85738 1.82299 1.34913 1.93469 1.71636 1.62239 1.68454 1.30080 1.19233 1.18438 1.05146 1.20087 0.97881 1.06787 0.92042 1.20820 0.93653 1.01632 0.98050 1.21635 0.97498 1.00675 0.94141 1.17690 0.91873 0.89536 0.92113 1.19600 0.89828 1.34238 1.05489 0.89979 1.25931 1.00865 0.93336 0.94192 1.69785 1.24701 1.24318 1.23176 0.86244 0.79565 0.80040 0.80527 1.19212 1.20225 1.18446 1.20744 0.93358 1.03392 0.97409 1.21247 0.89119 1.01752 0.87191 1.21745 0.97501 0.99208 0.96993 0.92517 0.91699 0.91847 0.78346 0.91616 0.92438 0.91082 0.90557 0.90904 0.90178 0.87702 0.88442 0.85780 0.90597 0.87218 0.88633 0.92436 0.90689 0.90420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.37 8.44 37.15 0.31 -1.06 16 2 C 0.14 1.35 0.96 -91.90 -0.09 1.26 16 3 O -0.55 -6.89 8.97 -35.23 -0.32 -7.21 16 4 C -0.14 -1.31 4.52 -29.79 -0.13 -1.45 16 5 C -0.14 -1.60 5.45 -28.59 -0.16 -1.75 16 6 C 0.13 1.74 5.24 -4.09 -0.02 1.72 16 7 N -0.98 -15.04 1.93 -113.51 -0.22 -15.26 16 8 S 2.70 53.71 5.04 -107.50 -0.54 53.17 16 9 O -0.97 -21.11 15.50 -57.17 -0.89 -22.00 16 10 O -0.97 -20.84 15.42 -57.33 -0.88 -21.73 16 11 C -0.64 -14.64 5.97 -39.66 -0.24 -14.88 16 12 C -0.15 -3.34 9.53 -39.29 -0.37 -3.71 16 13 C -0.12 -2.84 10.02 -39.66 -0.40 -3.23 16 14 C -0.12 -3.05 8.70 -38.87 -0.34 -3.39 16 15 C 0.09 2.41 5.58 -106.82 -0.60 1.82 16 16 C -0.46 -12.04 9.05 -37.74 -0.34 -12.38 16 17 H 0.08 2.04 7.91 -52.49 -0.41 1.62 16 18 C 0.07 1.84 5.14 -17.35 -0.09 1.75 16 19 N -0.79 -20.17 10.95 55.55 0.61 -19.56 16 20 Si 0.91 18.25 29.59 -169.99 -5.03 13.22 16 21 H -0.27 -5.25 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.45 7.11 56.52 0.40 -5.04 16 23 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 24 C -0.13 -3.17 9.26 -38.87 -0.36 -3.53 16 25 C 0.13 1.76 5.64 -3.12 -0.02 1.74 16 26 C -0.12 -1.16 5.18 -27.48 -0.14 -1.30 16 27 H 0.06 0.40 8.09 -51.93 -0.42 -0.02 16 28 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.37 3.68 8.88 45.56 0.40 4.09 16 31 H 0.07 0.54 7.36 -51.93 -0.38 0.16 16 32 H 0.06 0.47 7.80 -51.93 -0.40 0.06 16 33 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.08 1.03 6.65 -51.93 -0.35 0.68 16 35 H 0.07 0.81 8.07 -51.93 -0.42 0.39 16 36 H 0.08 1.17 7.67 -51.92 -0.40 0.77 16 37 H 0.10 2.16 7.60 -52.49 -0.40 1.76 16 38 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 39 H 0.12 3.20 6.15 -52.49 -0.32 2.88 16 40 H 0.28 6.50 8.30 -40.82 -0.34 6.16 16 41 H 0.11 2.60 7.60 -52.49 -0.40 2.20 16 42 H 0.10 1.42 6.62 -51.93 -0.34 1.08 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.07 0.64 7.32 -51.93 -0.38 0.26 16 45 H 0.08 0.68 7.74 -51.93 -0.40 0.28 16 LS Contribution 361.73 15.07 5.45 5.45 Total: -1.00 -31.67 361.73 -10.67 -42.34 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -5.87 Total: 9.97 kcal Atomic # 6 Polarization: -35.41 SS G_CDS: -2.98 Total: -38.39 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.39 Total: -34.82 kcal Atomic # 8 Polarization: -48.85 SS G_CDS: -2.09 Total: -50.93 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.03 Total: 13.22 kcal Atomic # 16 Polarization: 53.71 SS G_CDS: -0.54 Total: 53.17 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -31.67 -10.67 -42.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619502858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.041 kcal (2) G-P(sol) polarization free energy of solvation -31.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds