Wall clock time and date at job start Sat Apr 11 2020 05:38:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42901 * 109.49562 * 2 1 4 4 C 1.52568 * 109.48992 * 120.04897 * 2 1 3 5 5 C 1.47090 * 114.32740 * 204.99668 * 4 2 1 6 6 C 1.54862 * 110.32253 * 297.19717 * 5 4 2 7 7 N 1.44581 * 109.60174 * 71.26737 * 6 5 4 8 8 S 1.65604 * 118.64326 * 89.24629 * 7 6 5 9 9 O 1.42106 * 106.40360 * 336.46264 * 8 7 6 10 10 O 1.42101 * 106.40342 * 203.54497 * 8 7 6 11 11 C 1.76202 * 107.21789 * 90.00262 * 8 7 6 12 12 C 1.38655 * 119.87106 * 89.99532 * 11 8 7 13 13 C 1.38617 * 120.49951 * 179.97438 * 12 11 8 14 14 C 1.37638 * 120.24678 * 0.02740 * 13 12 11 15 15 C 1.40704 * 119.74614 * 359.97438 * 14 13 12 16 16 C 1.41397 * 120.24401 * 179.97438 * 15 14 13 17 17 H 1.07996 * 119.99864 * 204.39224 * 16 15 14 18 18 C 1.39938 * 119.99821 * 24.40268 * 16 15 14 19 19 N 1.30820 * 120.00783 * 17.84974 * 18 16 15 20 20 Si 1.86801 * 119.99632 * 197.85625 * 18 16 15 21 21 H 1.48500 * 109.47276 * 89.99721 * 20 18 16 22 22 H 1.48500 * 109.47114 * 209.99537 * 20 18 16 23 23 H 1.48498 * 109.47137 * 329.99824 * 20 18 16 24 24 C 1.37593 * 119.87330 * 269.72305 * 11 8 7 25 25 C 1.47601 * 122.71425 * 269.53370 * 7 6 5 26 26 C 1.50887 * 109.50566 * 239.94199 * 2 1 3 27 27 H 1.09003 * 109.47008 * 299.95497 * 1 2 3 28 28 H 1.09002 * 109.46944 * 59.95231 * 1 2 3 29 29 H 1.08994 * 109.47705 * 179.97438 * 1 2 3 30 30 H 0.96701 * 113.99670 * 60.04103 * 3 2 1 31 31 H 1.09006 * 108.51110 * 83.74350 * 4 2 1 32 32 H 1.09000 * 108.38588 * 326.16335 * 4 2 1 33 33 H 1.08999 * 109.32924 * 176.93628 * 5 4 2 34 34 H 1.09002 * 109.18859 * 57.37017 * 5 4 2 35 35 H 1.08996 * 109.45344 * 311.22320 * 6 5 4 36 36 H 1.09009 * 109.42756 * 191.29128 * 6 5 4 37 37 H 1.08001 * 119.75267 * 0.02562 * 12 11 8 38 38 H 1.08001 * 119.87923 * 180.02562 * 13 12 11 39 39 H 1.07996 * 120.12897 * 179.97438 * 14 13 12 40 40 H 0.96999 * 120.00748 * 179.97438 * 19 18 16 41 41 H 1.07995 * 120.12959 * 0.02562 * 24 11 8 42 42 H 1.08991 * 108.94936 * 162.55676 * 25 7 6 43 43 H 1.08996 * 108.94477 * 281.18583 * 25 7 6 44 44 H 1.08998 * 109.36636 * 268.32461 * 26 2 1 45 45 H 1.08997 * 109.36893 * 27.94928 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0069 1.3471 0.0000 4 6 2.0390 -0.7202 1.2450 5 6 3.3863 -0.3130 1.6722 6 6 4.4253 -0.6594 0.5773 7 7 4.2523 0.2256 -0.5528 8 16 5.0802 1.6597 -0.5721 9 8 5.3769 1.9700 0.7826 10 8 4.3536 2.5310 -1.4278 11 6 6.6255 1.3593 -1.3637 12 6 6.7388 1.5114 -2.7372 13 6 7.9483 1.2790 -3.3733 14 6 9.0514 0.8935 -2.6460 15 6 8.9480 0.7361 -1.2516 16 6 10.0744 0.3399 -0.4942 17 1 9.9391 -0.1531 0.4571 18 6 11.3643 0.5869 -0.9771 19 7 11.5503 1.4694 -1.9248 20 14 12.8209 -0.3436 -0.2687 21 1 13.0372 -1.5905 -1.0457 22 1 14.0365 0.5057 -0.3472 23 1 12.5470 -0.6858 1.1502 24 6 7.7164 0.9802 -0.6158 25 6 3.3636 -0.0936 -1.6873 26 6 2.0338 -0.7124 -1.2310 27 1 -0.3633 0.5131 0.8904 28 1 -0.3633 0.5146 -0.8896 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7222 1.8650 0.7654 31 1 2.0482 -1.7918 1.0454 32 1 1.3437 -0.5275 2.0620 33 1 3.6456 -0.8345 2.5935 34 1 3.3957 0.7621 1.8513 35 1 4.2834 -1.6911 0.2556 36 1 5.4308 -0.5402 0.9810 37 1 5.8785 1.8139 -3.3158 38 1 8.0254 1.4009 -4.4437 39 1 9.9926 0.7126 -3.1436 40 1 12.4445 1.6409 -2.2593 41 1 7.6268 0.8663 0.4544 42 1 3.1562 0.8210 -2.2426 43 1 3.8703 -0.7986 -2.3462 44 1 2.1828 -1.7676 -1.0024 45 1 1.2982 -0.6178 -2.0298 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619502858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:27 Heat of formation + Delta-G solvation = -127.288800 kcal Electronic energy + Delta-G solvation = -28921.524107 eV Core-core repulsion = 25029.554784 eV Total energy + Delta-G solvation = -3891.969322 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.61814 -39.44625 -38.19709 -36.80987 -36.68414 -35.67606 -33.90828 -33.39899 -31.92890 -31.57792 -29.40653 -27.36269 -26.76159 -24.67956 -23.61764 -22.80319 -22.19930 -20.94690 -20.17215 -19.09540 -18.44859 -17.73285 -17.48330 -17.26973 -16.91615 -16.55596 -16.09708 -15.96476 -15.29335 -15.21290 -15.02600 -14.80983 -14.48319 -14.31550 -14.00725 -13.74667 -13.54278 -13.40917 -13.24046 -13.09718 -13.05804 -12.94097 -12.90968 -12.85016 -12.67895 -12.55762 -12.20084 -12.19288 -11.95393 -11.85268 -11.60951 -11.53959 -11.25259 -11.14984 -11.13702 -10.69047 -9.87256 -9.68558 -9.57891 -8.73759 -6.46706 -0.38307 0.41940 0.82439 1.36853 1.46396 1.50968 2.16901 2.22593 2.58078 2.92014 3.38323 3.49511 3.57488 3.80496 3.91319 3.96008 4.16850 4.21507 4.25825 4.29590 4.42385 4.54885 4.63879 4.76857 4.81759 4.83997 4.85640 4.89414 4.92096 4.95905 5.05868 5.07961 5.18822 5.20333 5.22875 5.28455 5.40645 5.44793 5.45786 5.55019 5.56459 5.86969 5.92392 5.97317 6.09272 6.51131 6.78488 6.83639 6.98516 8.24581 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022013 B = 0.003389 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.666840 B = 8260.021811 C = 8774.306475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.127 3.873 3 O -0.574 6.574 4 C -0.138 4.138 5 C -0.134 4.134 6 C 0.117 3.883 7 N -0.964 5.964 8 S 2.716 3.284 9 O -0.995 6.995 10 O -0.984 6.984 11 C -0.648 4.648 12 C -0.153 4.153 13 C -0.123 4.123 14 C -0.143 4.143 15 C 0.064 3.936 16 C -0.498 4.498 17 H 0.081 0.919 18 C 0.035 3.965 19 N -0.825 5.825 20 Si 0.988 3.012 21 H -0.258 1.258 22 H -0.268 1.268 23 H -0.257 1.257 24 C -0.149 4.149 25 C 0.122 3.878 26 C -0.113 4.113 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.080 0.920 30 H 0.377 0.623 31 H 0.085 0.915 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.052 0.948 35 H 0.103 0.897 36 H 0.060 0.940 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.115 0.885 40 H 0.292 0.708 41 H 0.108 0.892 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.098 0.902 45 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.657 -8.678 2.958 19.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.087 3.913 3 O -0.380 6.380 4 C -0.176 4.176 5 C -0.173 4.173 6 C -0.008 4.008 7 N -0.802 5.802 8 S 2.808 3.192 9 O -0.986 6.986 10 O -0.974 6.974 11 C -0.735 4.735 12 C -0.173 4.173 13 C -0.142 4.142 14 C -0.163 4.163 15 C 0.060 3.940 16 C -0.527 4.527 17 H 0.100 0.900 18 C -0.181 4.181 19 N -0.451 5.451 20 Si 0.808 3.192 21 H -0.182 1.182 22 H -0.192 1.192 23 H -0.181 1.181 24 C -0.169 4.169 25 C -0.002 4.002 26 C -0.152 4.152 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.225 0.775 31 H 0.103 0.897 32 H 0.091 0.909 33 H 0.105 0.895 34 H 0.071 0.929 35 H 0.121 0.879 36 H 0.078 0.922 37 H 0.145 0.855 38 H 0.145 0.855 39 H 0.133 0.867 40 H 0.103 0.897 41 H 0.126 0.874 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -17.510 -7.989 2.590 19.420 hybrid contribution 1.337 -0.038 0.356 1.384 sum -16.173 -8.027 2.946 18.294 Atomic orbital electron populations 1.22470 0.94102 1.03428 1.02541 1.20824 0.93158 0.82148 0.95164 1.86687 1.77410 1.24177 1.49769 1.21131 0.96461 1.01887 0.98102 1.21186 0.95600 1.02088 0.98471 1.21410 0.98811 0.95283 0.85325 1.56596 1.56504 1.38075 1.29072 1.01025 0.72379 0.73436 0.72340 1.93451 1.85973 1.83383 1.35754 1.93438 1.71288 1.63808 1.68856 1.30650 1.20620 1.16658 1.05549 1.20439 0.98460 1.06139 0.92294 1.21157 0.93103 1.00349 0.99570 1.21651 0.98002 1.02532 0.94130 1.18063 0.92794 0.90171 0.92933 1.19881 0.91017 1.35693 1.06079 0.90041 1.26827 1.03271 0.93611 0.94351 1.69828 1.25978 1.25126 1.24140 0.85117 0.75673 0.78703 0.79737 1.18233 1.19236 1.18114 1.20821 0.93788 1.04737 0.97603 1.21498 0.90690 1.01464 0.86524 1.21834 0.95587 1.00132 0.97663 0.91881 0.92306 0.90120 0.77522 0.89672 0.90851 0.89526 0.92918 0.87903 0.92154 0.85517 0.85492 0.86732 0.89703 0.87401 0.90519 0.91244 0.88397 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.10 8.44 71.98 0.61 -1.49 16 2 C 0.13 2.20 0.96 -11.63 -0.01 2.18 16 3 O -0.57 -13.89 8.97 -148.98 -1.34 -15.23 16 4 C -0.14 -2.12 4.52 28.61 0.13 -1.99 16 5 C -0.13 -2.88 5.45 29.39 0.16 -2.72 16 6 C 0.12 3.01 5.24 87.37 0.46 3.47 16 7 N -0.96 -28.90 1.93 -513.02 -0.99 -29.90 16 8 S 2.72 109.47 5.04 -56.49 -0.28 109.18 16 9 O -1.00 -44.28 15.50 -128.00 -1.98 -46.26 16 10 O -0.98 -42.56 15.42 -127.85 -1.97 -44.53 16 11 C -0.65 -30.30 5.97 22.22 0.13 -30.17 16 12 C -0.15 -6.95 9.53 22.46 0.21 -6.74 16 13 C -0.12 -5.73 10.02 22.22 0.22 -5.51 16 14 C -0.14 -7.54 8.70 22.73 0.20 -7.35 16 15 C 0.06 3.49 5.58 -21.29 -0.12 3.37 16 16 C -0.50 -26.87 9.05 23.46 0.21 -26.65 16 17 H 0.08 4.22 7.91 -2.91 -0.02 4.20 16 18 C 0.03 1.73 5.14 85.26 0.44 2.17 16 19 N -0.83 -42.76 10.95 21.82 0.24 -42.52 16 20 Si 0.99 37.53 29.59 68.60 2.03 39.56 16 21 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 22 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 23 H -0.26 -9.56 7.11 99.48 0.71 -8.85 16 24 C -0.15 -7.66 9.26 22.73 0.21 -7.45 16 25 C 0.12 3.06 5.64 86.37 0.49 3.55 16 26 C -0.11 -1.93 5.18 30.11 0.16 -1.77 16 27 H 0.06 0.71 8.09 -2.39 -0.02 0.69 16 28 H 0.06 0.81 8.10 -2.39 -0.02 0.80 16 29 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.38 7.32 8.88 -74.06 -0.66 6.67 16 31 H 0.08 1.02 7.36 -2.38 -0.02 1.00 16 32 H 0.07 0.93 7.80 -2.39 -0.02 0.91 16 33 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 34 H 0.05 1.39 6.65 -2.39 -0.02 1.37 16 35 H 0.10 2.01 8.07 -2.39 -0.02 2.00 16 36 H 0.06 1.78 7.67 -2.38 -0.02 1.77 16 37 H 0.13 5.13 7.60 -2.91 -0.02 5.11 16 38 H 0.13 5.03 8.06 -2.91 -0.02 5.00 16 39 H 0.11 6.13 6.15 -2.91 -0.02 6.12 16 40 H 0.29 13.56 8.30 -92.71 -0.77 12.79 16 41 H 0.11 5.41 7.60 -2.91 -0.02 5.39 16 42 H 0.08 2.22 6.62 -2.39 -0.02 2.21 16 43 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 44 H 0.10 1.23 7.32 -2.39 -0.02 1.21 16 45 H 0.09 1.32 7.74 -2.39 -0.02 1.30 16 Total: -1.00 -70.51 361.73 -0.45 -70.97 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: 0.35 Total: 35.83 kcal Atomic # 6 Polarization: -80.60 SS G_CDS: 3.50 Total: -77.10 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -0.75 Total: -72.41 kcal Atomic # 8 Polarization: -100.73 SS G_CDS: -5.29 Total: -106.02 kcal Atomic # 14 Polarization: 37.53 SS G_CDS: 2.03 Total: 39.56 kcal Atomic # 16 Polarization: 109.47 SS G_CDS: -0.28 Total: 109.18 kcal Total: -70.51 -0.45 -70.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619502858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.322 kcal (2) G-P(sol) polarization free energy of solvation -70.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds