Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47125 * 2 1 4 4 N 1.46500 * 109.46986 * 239.99657 * 2 1 3 5 5 S 1.65600 * 119.99963 * 40.69751 * 4 2 1 6 6 O 1.42102 * 104.27392 * 175.53635 * 5 4 2 7 7 O 1.42101 * 104.27421 * 303.38946 * 5 4 2 8 8 C 1.81395 * 104.45207 * 59.46200 * 5 4 2 9 9 C 1.53001 * 109.46954 * 166.71196 * 8 5 4 10 10 C 1.53004 * 109.46965 * 180.02562 * 9 8 5 11 11 C 1.50692 * 109.47108 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00474 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00074 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99991 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00161 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47209 * 89.99677 * 15 13 11 17 17 H 1.48505 * 109.47160 * 210.00171 * 15 13 11 18 18 H 1.48504 * 109.46821 * 329.99743 * 15 13 11 19 19 C 1.50706 * 109.47169 * 119.99840 * 2 1 3 20 20 O 1.21251 * 120.00221 * 345.70791 * 19 2 1 21 21 C 1.47168 * 119.99682 * 165.70914 * 19 2 1 22 22 C 1.39857 * 120.16803 * 188.45859 * 21 19 2 23 23 C 1.37884 * 119.82491 * 179.97438 * 22 21 19 24 24 C 1.38406 * 120.16832 * 359.97438 * 23 22 21 25 25 C 1.38403 * 120.35541 * 0.04332 * 24 23 22 26 26 C 1.37885 * 120.16777 * 359.95953 * 25 24 23 27 27 H 1.09004 * 109.46970 * 299.99848 * 1 2 3 28 28 H 1.08991 * 109.47495 * 60.00189 * 1 2 3 29 29 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47140 * 189.90582 * 3 2 1 31 31 H 1.08998 * 109.47079 * 309.90041 * 3 2 1 32 32 H 1.08998 * 109.47457 * 69.90099 * 3 2 1 33 33 H 0.97000 * 120.00067 * 220.68398 * 4 2 1 34 34 H 1.09005 * 109.47171 * 286.70952 * 8 5 4 35 35 H 1.08996 * 109.47232 * 46.70876 * 8 5 4 36 36 H 1.08999 * 109.47164 * 299.99487 * 9 8 5 37 37 H 1.08996 * 109.47412 * 59.99791 * 9 8 5 38 38 H 1.09005 * 109.47149 * 299.99749 * 10 9 8 39 39 H 1.09004 * 109.47257 * 59.99981 * 10 9 8 40 40 H 0.97007 * 120.00202 * 179.97438 * 14 13 11 41 41 H 1.08001 * 120.09045 * 359.70731 * 22 21 19 42 42 H 1.07999 * 119.91552 * 180.02562 * 23 22 21 43 43 H 1.08009 * 119.82017 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.91900 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.08785 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 1.2691 -0.4524 -2.6536 6 8 2.0635 -1.1815 -3.5792 7 8 -0.0859 -0.8064 -2.4131 8 6 1.4178 1.3305 -2.9530 9 6 1.0621 1.6344 -4.4097 10 6 1.1881 3.1381 -4.6624 11 6 0.8385 3.4374 -6.0973 12 1 0.5543 2.6355 -6.7625 13 6 0.8803 4.7353 -6.5608 14 7 1.2248 5.7121 -5.7504 15 14 0.4461 5.1064 -8.3393 16 1 -1.0098 5.3777 -8.4472 17 1 1.2067 6.2972 -8.7965 18 1 0.7965 3.9394 -9.1882 19 6 2.0323 -0.7104 1.2305 20 8 1.2751 -0.9413 2.1489 21 6 3.4421 -1.1239 1.3174 22 6 3.8729 -1.9349 2.3722 23 6 5.1952 -2.3185 2.4464 24 6 6.0951 -1.9034 1.4803 25 6 5.6767 -1.1005 0.4335 26 6 4.3577 -0.7084 0.3454 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1155 1.4476 -0.1768 31 1 1.5396 2.0048 -0.7884 32 1 1.8282 1.9028 0.9650 33 1 2.7805 -1.2874 -1.1344 34 1 0.7367 1.8678 -2.2930 35 1 2.4415 1.6480 -2.7550 36 1 1.7432 1.0972 -5.0697 37 1 0.0384 1.3169 -4.6077 38 1 0.5073 3.6758 -4.0024 39 1 2.2121 3.4553 -4.4646 40 1 1.2546 6.6252 -6.0766 41 1 3.1727 -2.2563 3.1290 42 1 5.5294 -2.9451 3.2601 43 1 7.1296 -2.2076 1.5437 44 1 6.3849 -0.7804 -0.3163 45 1 4.0326 -0.0814 -0.4717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000647886846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -82.266151 kcal Electronic energy + Delta-G solvation = -27766.769870 eV Core-core repulsion = 23876.752876 eV Total energy + Delta-G solvation = -3890.016994 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.91803 -38.69840 -37.30213 -36.61832 -35.80138 -34.75631 -32.28295 -31.75188 -31.37536 -30.75887 -28.04060 -27.40192 -25.61409 -23.80029 -23.06941 -22.30104 -20.62783 -19.99015 -19.25348 -18.04914 -17.65272 -16.68684 -16.49120 -16.03678 -15.93773 -15.56466 -15.31544 -14.90149 -14.58869 -14.51029 -14.42202 -14.18674 -13.96825 -13.35646 -13.10637 -12.97741 -12.83460 -12.55302 -12.41947 -12.15909 -12.07825 -11.99969 -11.85159 -11.80603 -11.68855 -11.46587 -11.24435 -11.16430 -10.93926 -10.84546 -10.45672 -10.04123 -9.97000 -9.81773 -9.42674 -9.40395 -9.38911 -9.14608 -8.43440 -6.08588 -4.11547 0.20578 0.37928 0.93811 1.94414 2.71904 3.28727 3.35108 3.38729 3.39038 3.42569 3.84106 4.24690 4.33322 4.40085 4.41506 4.51938 4.57373 4.66154 4.78244 4.84522 4.95579 5.04850 5.07323 5.13370 5.28056 5.32930 5.42009 5.45485 5.55849 5.66724 5.68541 5.83263 5.87867 5.93278 5.99998 6.02427 6.20008 6.22998 6.40400 6.44208 6.66895 6.82987 7.07461 7.53203 7.62873 7.89330 8.29774 8.94661 9.53450 11.02539 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002719 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.568866 B =10294.649085 C =10679.918341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 C -0.188 4.188 4 N -1.116 6.116 5 S 2.595 3.405 6 O -0.958 6.958 7 O -0.955 6.955 8 C -0.612 4.612 9 C -0.105 4.105 10 C 0.031 3.969 11 C -0.527 4.527 12 H 0.058 0.942 13 C 0.058 3.942 14 N -0.895 5.895 15 Si 0.894 3.106 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.273 1.273 19 C 0.410 3.590 20 O -0.435 6.435 21 C -0.169 4.169 22 C -0.061 4.061 23 C -0.132 4.132 24 C -0.087 4.087 25 C -0.129 4.129 26 C -0.086 4.086 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.080 0.920 33 H 0.417 0.583 34 H 0.133 0.867 35 H 0.133 0.867 36 H 0.070 0.930 37 H 0.063 0.937 38 H 0.021 0.979 39 H 0.021 0.979 40 H 0.262 0.738 41 H 0.133 0.867 42 H 0.129 0.871 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.769 -13.330 17.981 24.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.050 3.950 3 C -0.246 4.246 4 N -0.877 5.877 5 S 2.692 3.308 6 O -0.949 6.949 7 O -0.945 6.945 8 C -0.744 4.744 9 C -0.144 4.144 10 C -0.007 4.007 11 C -0.565 4.565 12 H 0.076 0.924 13 C -0.143 4.143 14 N -0.534 5.534 15 Si 0.721 3.279 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C 0.285 3.715 20 O -0.307 6.307 21 C -0.170 4.170 22 C -0.080 4.080 23 C -0.150 4.150 24 C -0.105 4.105 25 C -0.147 4.147 26 C -0.104 4.104 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.098 0.902 33 H 0.254 0.746 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.039 0.961 39 H 0.039 0.961 40 H 0.071 0.929 41 H 0.151 0.849 42 H 0.147 0.853 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 7.815 -13.871 17.978 24.014 hybrid contribution 0.534 0.719 -0.688 1.129 sum 8.348 -13.152 17.290 23.273 Atomic orbital electron populations 1.22464 0.90382 1.05420 1.04302 1.20656 0.96624 0.93104 0.84597 1.22811 1.03171 0.93442 1.05197 1.56134 1.48562 1.59696 1.23311 1.05536 0.74450 0.78612 0.72236 1.93584 1.70305 1.69957 1.61027 1.93612 1.35252 1.81992 1.83670 1.30819 1.11474 1.22872 1.09249 1.21515 1.01135 1.03834 0.87945 1.19059 0.97683 0.86960 0.96994 1.21246 1.46290 0.93004 0.95949 0.92379 1.25009 0.95147 0.96354 0.97813 1.69949 1.48161 0.99969 1.35318 0.86566 0.78496 0.77934 0.84885 1.20561 1.21176 1.19741 1.22412 0.87083 0.75046 0.86991 1.90534 1.57919 1.43908 1.38367 1.20450 0.95114 1.03245 0.98199 1.21437 0.96138 0.94285 0.96092 1.21187 0.93177 1.00950 0.99692 1.21498 0.99930 0.95509 0.93595 1.21265 0.95978 0.98539 0.98873 1.21882 0.93245 0.97665 0.97589 0.90203 0.89776 0.90107 0.90380 0.89205 0.90151 0.74644 0.84900 0.84918 0.91178 0.91841 0.96101 0.96073 0.92887 0.84864 0.85289 0.85397 0.84871 0.83827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.97 6.53 37.16 0.24 -1.73 16 2 C 0.14 1.46 0.73 -132.97 -0.10 1.36 16 3 C -0.19 -1.62 7.84 37.16 0.29 -1.33 16 4 N -1.12 -12.03 4.45 -0.40 0.00 -12.04 16 5 S 2.60 36.38 5.03 -107.50 -0.54 35.84 16 6 O -0.96 -16.26 18.05 -57.54 -1.04 -17.30 16 7 O -0.96 -15.67 14.59 -57.54 -0.84 -16.51 16 8 C -0.61 -8.60 4.23 37.16 0.16 -8.44 16 9 C -0.10 -2.01 5.14 -26.73 -0.14 -2.14 16 10 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 11 C -0.53 -14.45 9.11 -34.44 -0.31 -14.77 16 12 H 0.06 1.55 7.74 -52.48 -0.41 1.15 16 13 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 14 N -0.89 -26.00 13.29 55.43 0.74 -25.26 16 15 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 19 C 0.41 4.47 6.04 -30.68 -0.19 4.28 16 20 O -0.44 -5.67 16.02 5.58 0.09 -5.58 16 21 C -0.17 -1.59 5.58 -105.06 -0.59 -2.18 16 22 C -0.06 -0.53 9.60 -39.11 -0.38 -0.90 16 23 C -0.13 -0.90 10.03 -39.65 -0.40 -1.30 16 24 C -0.09 -0.55 10.04 -39.46 -0.40 -0.95 16 25 C -0.13 -0.89 10.03 -39.65 -0.40 -1.29 16 26 C -0.09 -0.69 7.43 -39.11 -0.29 -0.98 16 27 H 0.08 0.84 7.95 -51.93 -0.41 0.43 16 28 H 0.08 1.00 5.40 -51.93 -0.28 0.72 16 29 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 30 H 0.08 0.55 5.97 -51.93 -0.31 0.24 16 31 H 0.09 0.78 4.80 -51.93 -0.25 0.53 16 32 H 0.08 0.62 8.11 -51.93 -0.42 0.20 16 33 H 0.42 3.92 6.06 -34.47 -0.21 3.71 16 34 H 0.13 1.64 5.92 -51.92 -0.31 1.33 16 35 H 0.13 1.55 7.93 -51.93 -0.41 1.14 16 36 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 41 H 0.13 1.10 7.67 -52.49 -0.40 0.70 16 42 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 43 H 0.13 0.51 8.06 -52.48 -0.42 0.09 16 44 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 45 H 0.14 1.02 4.36 -52.49 -0.23 0.79 16 LS Contribution 369.86 15.07 5.57 5.57 Total: -1.00 -34.97 369.86 -9.91 -44.88 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -6.14 Total: 2.38 kcal Atomic # 6 Polarization: -25.49 SS G_CDS: -2.72 Total: -28.22 kcal Atomic # 7 Polarization: -38.03 SS G_CDS: 0.73 Total: -37.30 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.79 Total: -39.38 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: 36.38 SS G_CDS: -0.54 Total: 35.84 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.97 -9.91 -44.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647886846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.388 kcal (2) G-P(sol) polarization free energy of solvation -34.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds