Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47125 * 2 1 4 4 N 1.46500 * 109.46986 * 239.99657 * 2 1 3 5 5 S 1.65600 * 119.99963 * 40.69751 * 4 2 1 6 6 O 1.42102 * 104.27392 * 175.53635 * 5 4 2 7 7 O 1.42101 * 104.27421 * 303.38946 * 5 4 2 8 8 C 1.81395 * 104.45207 * 59.46200 * 5 4 2 9 9 C 1.53001 * 109.46954 * 166.71196 * 8 5 4 10 10 C 1.53004 * 109.46965 * 180.02562 * 9 8 5 11 11 C 1.50692 * 109.47108 * 179.97438 * 10 9 8 12 12 H 1.08003 * 120.00474 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00074 * 179.97438 * 11 10 9 14 14 N 1.31508 * 119.99991 * 359.97438 * 13 11 10 15 15 Si 1.86803 * 120.00161 * 180.02562 * 13 11 10 16 16 H 1.48492 * 109.47209 * 89.99677 * 15 13 11 17 17 H 1.48505 * 109.47160 * 210.00171 * 15 13 11 18 18 H 1.48504 * 109.46821 * 329.99743 * 15 13 11 19 19 C 1.50706 * 109.47169 * 119.99840 * 2 1 3 20 20 O 1.21251 * 120.00221 * 345.70791 * 19 2 1 21 21 C 1.47168 * 119.99682 * 165.70914 * 19 2 1 22 22 C 1.39857 * 120.16803 * 188.45859 * 21 19 2 23 23 C 1.37884 * 119.82491 * 179.97438 * 22 21 19 24 24 C 1.38406 * 120.16832 * 359.97438 * 23 22 21 25 25 C 1.38403 * 120.35541 * 0.04332 * 24 23 22 26 26 C 1.37885 * 120.16777 * 359.95953 * 25 24 23 27 27 H 1.09004 * 109.46970 * 299.99848 * 1 2 3 28 28 H 1.08991 * 109.47495 * 60.00189 * 1 2 3 29 29 H 1.09000 * 109.46890 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47140 * 189.90582 * 3 2 1 31 31 H 1.08998 * 109.47079 * 309.90041 * 3 2 1 32 32 H 1.08998 * 109.47457 * 69.90099 * 3 2 1 33 33 H 0.97000 * 120.00067 * 220.68398 * 4 2 1 34 34 H 1.09005 * 109.47171 * 286.70952 * 8 5 4 35 35 H 1.08996 * 109.47232 * 46.70876 * 8 5 4 36 36 H 1.08999 * 109.47164 * 299.99487 * 9 8 5 37 37 H 1.08996 * 109.47412 * 59.99791 * 9 8 5 38 38 H 1.09005 * 109.47149 * 299.99749 * 10 9 8 39 39 H 1.09004 * 109.47257 * 59.99981 * 10 9 8 40 40 H 0.97007 * 120.00202 * 179.97438 * 14 13 11 41 41 H 1.08001 * 120.09045 * 359.70731 * 22 21 19 42 42 H 1.07999 * 119.91552 * 180.02562 * 23 22 21 43 43 H 1.08009 * 119.82017 * 180.02562 * 24 23 22 44 44 H 1.07997 * 119.91900 * 179.97438 * 25 24 23 45 45 H 1.08000 * 120.08785 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 -1.1961 5 16 1.2691 -0.4524 -2.6536 6 8 2.0635 -1.1815 -3.5792 7 8 -0.0859 -0.8064 -2.4131 8 6 1.4178 1.3305 -2.9530 9 6 1.0621 1.6344 -4.4097 10 6 1.1881 3.1381 -4.6624 11 6 0.8385 3.4374 -6.0973 12 1 0.5543 2.6355 -6.7625 13 6 0.8803 4.7353 -6.5608 14 7 1.2248 5.7121 -5.7504 15 14 0.4461 5.1064 -8.3393 16 1 -1.0098 5.3777 -8.4472 17 1 1.2067 6.2972 -8.7965 18 1 0.7965 3.9394 -9.1882 19 6 2.0323 -0.7104 1.2305 20 8 1.2751 -0.9413 2.1489 21 6 3.4421 -1.1239 1.3174 22 6 3.8729 -1.9349 2.3722 23 6 5.1952 -2.3185 2.4464 24 6 6.0951 -1.9034 1.4803 25 6 5.6767 -1.1005 0.4335 26 6 4.3577 -0.7084 0.3454 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5137 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1155 1.4476 -0.1768 31 1 1.5396 2.0048 -0.7884 32 1 1.8282 1.9028 0.9650 33 1 2.7805 -1.2874 -1.1344 34 1 0.7367 1.8678 -2.2930 35 1 2.4415 1.6480 -2.7550 36 1 1.7432 1.0972 -5.0697 37 1 0.0384 1.3169 -4.6077 38 1 0.5073 3.6758 -4.0024 39 1 2.2121 3.4553 -4.4646 40 1 1.2546 6.6252 -6.0766 41 1 3.1727 -2.2563 3.1290 42 1 5.5294 -2.9451 3.2601 43 1 7.1296 -2.2076 1.5437 44 1 6.3849 -0.7804 -0.3163 45 1 4.0326 -0.0814 -0.4717 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000647886846.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -105.304878 kcal Electronic energy + Delta-G solvation = -27767.768904 eV Core-core repulsion = 23876.752876 eV Total energy + Delta-G solvation = -3891.016028 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.69789 -39.33842 -38.41975 -37.64962 -37.04533 -36.45185 -34.17680 -32.37661 -31.92834 -31.68552 -29.70601 -28.29823 -26.45489 -25.48766 -23.72614 -23.04022 -22.21054 -20.84767 -20.31588 -18.91562 -18.71190 -18.40124 -17.40874 -17.29542 -16.72095 -16.61655 -16.45822 -16.21799 -15.73933 -15.56403 -15.25378 -15.05825 -14.64975 -14.51959 -14.20266 -14.09989 -13.97562 -13.58017 -13.50446 -13.38770 -13.28593 -13.19474 -13.05164 -12.87330 -12.73478 -12.65664 -12.49611 -12.45145 -12.25991 -12.09332 -11.98913 -11.69579 -11.33551 -11.14282 -10.81194 -10.57630 -10.54135 -9.98488 -9.97839 -8.20179 -6.29980 -0.82182 -0.41947 0.38638 1.18681 1.41882 1.42224 1.53231 1.71677 2.41536 2.61715 2.71249 2.80606 3.13890 3.21576 3.43105 3.72509 3.78506 3.82570 3.89214 3.98503 4.05027 4.11029 4.24037 4.40304 4.43571 4.50272 4.58914 4.64933 4.74307 4.77758 4.87246 4.89676 4.97149 5.04956 5.11032 5.22893 5.25482 5.31844 5.43735 5.49625 5.50122 5.69022 5.82417 5.83924 5.92370 6.23760 6.26892 6.85889 7.39079 8.90943 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017756 B = 0.002719 C = 0.002621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.568866 B =10294.649085 C =10679.918341 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.140 3.860 3 C -0.192 4.192 4 N -1.102 6.102 5 S 2.619 3.381 6 O -0.986 6.986 7 O -0.981 6.981 8 C -0.610 4.610 9 C -0.104 4.104 10 C 0.033 3.967 11 C -0.551 4.551 12 H 0.058 0.942 13 C 0.005 3.995 14 N -0.928 5.928 15 Si 0.958 3.042 16 H -0.274 1.274 17 H -0.281 1.281 18 H -0.266 1.266 19 C 0.414 3.586 20 O -0.466 6.466 21 C -0.189 4.189 22 C -0.076 4.076 23 C -0.133 4.133 24 C -0.083 4.083 25 C -0.134 4.134 26 C -0.092 4.092 27 H 0.089 0.911 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.425 0.575 34 H 0.152 0.848 35 H 0.160 0.840 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.005 0.995 39 H 0.008 0.992 40 H 0.264 0.736 41 H 0.128 0.872 42 H 0.151 0.849 43 H 0.156 0.844 44 H 0.154 0.846 45 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.460 -13.641 18.085 24.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.051 3.949 3 C -0.250 4.250 4 N -0.866 5.866 5 S 2.716 3.284 6 O -0.977 6.977 7 O -0.970 6.970 8 C -0.741 4.741 9 C -0.144 4.144 10 C -0.006 4.006 11 C -0.589 4.589 12 H 0.076 0.924 13 C -0.193 4.193 14 N -0.568 5.568 15 Si 0.782 3.218 16 H -0.199 1.199 17 H -0.206 1.206 18 H -0.190 1.190 19 C 0.290 3.710 20 O -0.340 6.340 21 C -0.190 4.190 22 C -0.094 4.094 23 C -0.151 4.151 24 C -0.100 4.100 25 C -0.152 4.152 26 C -0.110 4.110 27 H 0.107 0.893 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.115 0.885 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.265 0.735 34 H 0.169 0.831 35 H 0.178 0.822 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.023 0.977 39 H 0.027 0.973 40 H 0.073 0.927 41 H 0.146 0.854 42 H 0.169 0.831 43 H 0.173 0.827 44 H 0.172 0.828 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 9.514 -14.196 18.069 24.870 hybrid contribution 0.070 0.778 -0.640 1.010 sum 9.584 -13.418 17.429 23.993 Atomic orbital electron populations 1.22495 0.91613 1.04380 1.04641 1.20718 0.95761 0.94276 0.84149 1.22882 1.04385 0.91825 1.05900 1.55767 1.48626 1.59896 1.22310 1.04629 0.73589 0.78000 0.72225 1.93543 1.70810 1.70768 1.62549 1.93588 1.36915 1.82374 1.84165 1.30780 1.13753 1.23338 1.06239 1.21312 1.01354 1.00317 0.91381 1.18952 0.96228 0.90187 0.95203 1.21747 1.46123 0.93311 0.97709 0.92362 1.25859 0.95081 0.96314 1.02076 1.70052 1.49160 1.00351 1.37212 0.85557 0.78394 0.77926 0.79875 1.19939 1.20622 1.19003 1.22594 0.87729 0.74189 0.86457 1.90521 1.58813 1.45331 1.39362 1.20407 0.94405 1.04688 0.99488 1.21560 0.97132 0.94717 0.96012 1.21478 0.92392 1.00769 1.00459 1.21882 1.01162 0.94303 0.92689 1.21593 0.95795 0.98251 0.99514 1.22012 0.93691 0.97866 0.97416 0.89270 0.90038 0.91873 0.88483 0.89111 0.89164 0.73538 0.83062 0.82180 0.91266 0.91937 0.97675 0.97347 0.92700 0.85438 0.83114 0.82655 0.82849 0.83123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.06 6.53 71.98 0.47 -3.59 16 2 C 0.14 2.81 0.73 2.86 0.00 2.81 16 3 C -0.19 -2.97 7.84 71.98 0.56 -2.41 16 4 N -1.10 -22.55 4.45 -155.18 -0.69 -23.24 16 5 S 2.62 71.29 5.03 -56.49 -0.28 71.01 16 6 O -0.99 -32.64 18.05 -127.65 -2.30 -34.95 16 7 O -0.98 -32.01 14.59 -127.65 -1.86 -33.87 16 8 C -0.61 -16.33 4.23 71.98 0.30 -16.03 16 9 C -0.10 -3.95 5.14 30.60 0.16 -3.80 16 10 C 0.03 1.59 4.97 29.85 0.15 1.74 16 11 C -0.55 -30.35 9.11 25.60 0.23 -30.12 16 12 H 0.06 3.12 7.74 -2.91 -0.02 3.09 16 13 C 0.01 0.28 5.46 84.66 0.46 0.75 16 14 N -0.93 -54.13 13.29 21.45 0.28 -53.85 16 15 Si 0.96 43.35 29.54 68.60 2.03 45.38 16 16 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 17 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 18 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 19 C 0.41 8.87 6.04 28.04 0.17 9.04 16 20 O -0.47 -12.34 16.02 -2.94 -0.05 -12.39 16 21 C -0.19 -3.38 5.58 -20.15 -0.11 -3.49 16 22 C -0.08 -1.24 9.60 22.58 0.22 -1.03 16 23 C -0.13 -1.52 10.03 22.23 0.22 -1.30 16 24 C -0.08 -0.79 10.04 22.35 0.22 -0.56 16 25 C -0.13 -1.48 10.03 22.23 0.22 -1.26 16 26 C -0.09 -1.30 7.43 22.58 0.17 -1.13 16 27 H 0.09 1.88 7.95 -2.39 -0.02 1.86 16 28 H 0.08 1.93 5.40 -2.39 -0.01 1.91 16 29 H 0.06 1.69 7.86 -2.39 -0.02 1.67 16 30 H 0.10 1.13 5.97 -2.39 -0.01 1.12 16 31 H 0.09 1.40 4.80 -2.39 -0.01 1.39 16 32 H 0.09 1.25 8.11 -2.39 -0.02 1.23 16 33 H 0.43 7.45 6.06 -96.75 -0.59 6.86 16 34 H 0.15 3.52 5.92 -2.39 -0.01 3.50 16 35 H 0.16 3.38 7.93 -2.39 -0.02 3.37 16 36 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 38 H 0.00 0.25 8.14 -2.38 -0.02 0.23 16 39 H 0.01 0.41 8.14 -2.38 -0.02 0.39 16 40 H 0.26 14.51 8.31 -92.70 -0.77 13.74 16 41 H 0.13 2.14 7.67 -2.91 -0.02 2.11 16 42 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 43 H 0.16 0.62 8.06 -2.91 -0.02 0.59 16 44 H 0.15 1.04 8.06 -2.91 -0.02 1.02 16 45 H 0.15 1.79 4.36 -2.91 -0.01 1.78 16 Total: -1.00 -75.52 369.86 1.01 -74.52 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.43 Total: 17.78 kcal Atomic # 6 Polarization: -53.83 SS G_CDS: 3.45 Total: -50.38 kcal Atomic # 7 Polarization: -76.68 SS G_CDS: -0.41 Total: -77.09 kcal Atomic # 8 Polarization: -77.00 SS G_CDS: -4.21 Total: -81.21 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: 71.29 SS G_CDS: -0.28 Total: 71.01 kcal Total: -75.52 1.01 -74.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000647886846.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.790 kcal (2) G-P(sol) polarization free energy of solvation -75.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.310 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds