Wall clock time and date at job start Sat Apr 11 2020 05:38:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46889 * 59.99994 * 12 10 8 14 14 H 1.48501 * 109.47074 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46838 * 300.00052 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 S 1.81408 * 109.46740 * 179.97438 * 18 16 6 20 20 O 1.42100 * 108.57692 * 294.48036 * 19 18 16 21 21 O 1.42099 * 108.57788 * 65.51066 * 19 18 16 22 22 C 1.81408 * 101.92010 * 179.97438 * 19 18 16 23 23 C 1.52995 * 109.46768 * 184.99964 * 22 19 18 24 24 C 1.52995 * 109.47060 * 305.00214 * 22 19 18 25 25 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 26 26 C 1.38114 * 119.93006 * 359.97438 * 25 5 4 27 27 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 28 28 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 29 29 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 30 30 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 31 31 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 32 32 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 33 33 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 34 34 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 35 35 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 36 36 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 37 37 H 1.09004 * 109.46822 * 65.00033 * 22 19 18 38 38 H 1.08995 * 109.47543 * 60.00172 * 23 22 19 39 39 H 1.09000 * 109.46857 * 180.02562 * 23 22 19 40 40 H 1.08999 * 109.47067 * 300.00048 * 23 22 19 41 41 H 1.09000 * 109.47321 * 180.02562 * 24 22 19 42 42 H 1.09004 * 109.47155 * 299.99615 * 24 22 19 43 43 H 1.09000 * 109.47644 * 59.99655 * 24 22 19 44 44 H 1.08001 * 120.03091 * 180.02562 * 25 5 4 45 45 H 1.08000 * 119.96158 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 8.4488 2.9181 -3.7743 14 1 8.3902 1.3874 -5.6547 15 1 6.3496 2.4555 -4.8968 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 16 8.4549 1.1696 2.6330 20 8 7.9937 2.5032 2.8003 21 8 8.1686 0.2052 3.6366 22 6 10.2484 1.2073 2.3633 23 6 10.9515 1.6001 3.6642 24 6 10.7272 -0.1774 1.9228 25 6 3.5780 -1.2019 0.0048 26 6 2.1968 -1.1984 0.0053 27 1 -0.3633 0.0042 1.0276 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3633 -0.8920 -0.5102 30 1 1.6553 2.1327 0.0007 31 1 4.1164 2.1380 -0.0101 32 1 7.3583 -0.9083 -0.8570 33 1 5.8170 -1.2467 -1.6806 34 1 8.2405 -0.9034 -4.4324 35 1 8.2751 -0.4415 0.8524 36 1 8.1480 1.2271 0.2458 37 1 10.4840 1.9367 1.5884 38 1 10.7159 0.8707 4.4391 39 1 12.0291 1.6232 3.5021 40 1 10.6104 2.5866 3.9780 41 1 11.8049 -0.1549 1.7612 42 1 10.4915 -0.9069 2.6978 43 1 10.2262 -0.4573 0.9961 44 1 4.1163 -2.1382 0.0094 45 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726940289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:37 Heat of formation + Delta-G solvation = -85.547373 kcal Electronic energy + Delta-G solvation = -28047.288220 eV Core-core repulsion = 24157.128942 eV Total energy + Delta-G solvation = -3890.159278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.06469 -38.30229 -36.75422 -35.78155 -35.45739 -35.06341 -33.00293 -31.77769 -30.59242 -29.98350 -27.63698 -27.38231 -25.76198 -23.34127 -22.70470 -22.18772 -21.51429 -19.28238 -18.41843 -17.44513 -16.90670 -16.62942 -16.14519 -15.84023 -15.55794 -15.24413 -14.99798 -14.73938 -14.45326 -14.13945 -13.83474 -13.55223 -13.41205 -13.22792 -13.08880 -12.87571 -12.64882 -12.48629 -12.28487 -12.04649 -11.82431 -11.79096 -11.71963 -11.58681 -11.54856 -11.49278 -11.37970 -11.11353 -10.94268 -10.77504 -10.68680 -10.34052 -10.13241 -9.99177 -9.68599 -8.72844 -8.57590 -8.54443 -7.73526 -6.34342 -4.42747 0.08504 1.65138 1.80054 2.92030 2.92372 3.14090 3.20000 3.23387 3.42103 3.95667 4.10375 4.12630 4.21461 4.47866 4.59494 4.84752 4.97265 4.99214 5.12594 5.14593 5.20398 5.32530 5.35436 5.43420 5.46327 5.54913 5.64104 5.68817 5.70570 5.77286 5.83408 5.87002 5.94862 6.03377 6.08567 6.38858 6.54478 6.72536 6.84621 6.90160 7.01383 7.15474 7.45413 7.59978 7.84585 7.93245 8.50303 8.68225 9.25462 10.72451 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.004940 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.270947 B = 5666.653747 C = 8081.889248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.102 4.102 3 C -0.112 4.112 4 C -0.101 4.101 5 C 0.164 3.836 6 N -0.547 5.547 7 C 0.236 3.764 8 C -0.544 4.544 9 H 0.064 0.936 10 C 0.068 3.932 11 N -0.889 5.889 12 Si 0.897 3.103 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.274 1.274 16 C 0.549 3.451 17 O -0.549 6.549 18 C -0.642 4.642 19 S 2.448 3.552 20 O -0.928 6.928 21 O -0.926 6.926 22 C -0.585 4.585 23 C -0.140 4.140 24 C -0.149 4.149 25 C -0.117 4.117 26 C -0.113 4.113 27 H 0.066 0.934 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.121 0.879 31 H 0.122 0.878 32 H 0.044 0.956 33 H 0.044 0.956 34 H 0.268 0.732 35 H 0.160 0.840 36 H 0.171 0.829 37 H 0.139 0.861 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.123 0.877 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.496 0.002 6.943 6.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.102 4.102 3 C -0.131 4.131 4 C -0.121 4.121 5 C 0.074 3.926 6 N -0.274 5.274 7 C 0.118 3.882 8 C -0.583 4.583 9 H 0.082 0.918 10 C -0.136 4.136 11 N -0.526 5.526 12 Si 0.724 3.276 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.199 1.199 16 C 0.336 3.664 17 O -0.428 6.428 18 C -0.771 4.771 19 S 2.626 3.374 20 O -0.925 6.925 21 O -0.923 6.923 22 C -0.693 4.693 23 C -0.198 4.198 24 C -0.207 4.207 25 C -0.137 4.137 26 C -0.132 4.132 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.138 0.862 31 H 0.140 0.860 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.178 0.822 36 H 0.189 0.811 37 H 0.157 0.843 38 H 0.093 0.907 39 H 0.099 0.901 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.141 0.859 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -0.153 0.270 8.021 8.027 hybrid contribution 0.955 0.501 -1.950 2.228 sum 0.802 0.771 6.071 6.173 Atomic orbital electron populations 1.20722 0.91519 1.02370 1.01882 1.19827 0.95773 0.93222 1.01351 1.20816 0.93485 0.97421 1.01341 1.21238 0.94160 0.97660 0.98999 1.17527 0.82905 0.93137 0.99074 1.45731 1.03613 1.61265 1.16750 1.19664 0.91944 0.95788 0.80825 1.21406 1.37441 0.95261 1.04153 0.91825 1.24923 0.95058 0.96039 0.97540 1.69904 1.37481 1.20496 1.24769 0.86563 0.78748 0.82119 0.80193 1.19907 1.20978 1.19912 1.19048 0.86973 0.77180 0.83151 1.90796 1.69781 1.50706 1.31547 1.30759 1.03752 1.16059 1.26483 1.07591 0.77104 0.75821 0.76895 1.93547 1.78429 1.36079 1.84400 1.93530 1.82588 1.62826 1.53373 1.30182 1.24844 1.06751 1.07569 1.21609 1.02062 1.02546 0.93632 1.21783 1.04053 0.92201 1.02677 1.21168 0.94251 0.97352 1.00891 1.20771 0.93393 0.97372 1.01623 0.91568 0.91838 0.91843 0.86151 0.86022 0.93819 0.93817 0.92240 0.82228 0.81133 0.84313 0.90713 0.90150 0.91061 0.90279 0.90514 0.90435 0.85891 0.86115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 2 C -0.10 -1.52 5.88 -104.59 -0.62 -2.13 16 3 C -0.11 -1.82 9.69 -39.61 -0.38 -2.21 16 4 C -0.10 -1.96 9.55 -39.39 -0.38 -2.34 16 5 C 0.16 3.38 4.75 -83.69 -0.40 2.99 16 6 N -0.55 -11.72 2.51 -114.74 -0.29 -12.01 16 7 C 0.24 5.37 4.88 -5.19 -0.03 5.34 16 8 C -0.54 -13.47 9.16 -34.44 -0.32 -13.78 16 9 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 10 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -23.12 13.29 55.43 0.74 -22.38 16 12 Si 0.90 19.66 29.54 -169.99 -5.02 14.64 16 13 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 14 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 15 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 16 C 0.55 11.64 7.55 -10.99 -0.08 11.55 16 17 O -0.55 -12.96 15.38 2.56 0.04 -12.93 16 18 C -0.64 -10.73 4.35 36.01 0.16 -10.57 16 19 S 2.45 39.35 3.50 -107.50 -0.38 38.97 16 20 O -0.93 -18.01 17.95 -59.52 -1.07 -19.08 16 21 O -0.93 -17.30 17.91 -59.53 -1.07 -18.36 16 22 C -0.58 -6.42 3.35 -26.74 -0.09 -6.51 16 23 C -0.14 -1.38 9.19 37.16 0.34 -1.04 16 24 C -0.15 -1.45 8.90 37.16 0.33 -1.12 16 25 C -0.12 -2.12 9.69 -39.39 -0.38 -2.51 16 26 C -0.11 -1.75 9.69 -39.61 -0.38 -2.13 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.12 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.12 2.39 8.06 -52.49 -0.42 1.97 16 32 H 0.04 0.96 6.47 -51.93 -0.34 0.62 16 33 H 0.04 1.06 7.86 -51.93 -0.41 0.65 16 34 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 35 H 0.16 2.21 5.89 -51.92 -0.31 1.91 16 36 H 0.17 2.65 7.91 -51.92 -0.41 2.24 16 37 H 0.14 1.26 8.14 -51.92 -0.42 0.83 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.72 6.39 -51.93 -0.33 0.39 16 44 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 LS Contribution 389.52 15.07 5.87 5.87 Total: -1.00 -33.95 389.52 -9.96 -43.91 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -6.83 Total: 5.05 kcal Atomic # 6 Polarization: -21.72 SS G_CDS: -1.96 Total: -23.68 kcal Atomic # 7 Polarization: -34.84 SS G_CDS: 0.45 Total: -34.39 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -2.09 Total: -50.37 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 39.35 SS G_CDS: -0.38 Total: 38.97 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -33.95 -9.96 -43.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.634 kcal (2) G-P(sol) polarization free energy of solvation -33.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds