Wall clock time and date at job start Sat Apr 11 2020 05:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38279 * 119.93129 * 2 1 4 4 C 1.38112 * 120.07227 * 180.27773 * 3 2 1 5 5 C 1.38880 * 119.92591 * 359.46855 * 4 3 2 6 6 N 1.39921 * 120.06637 * 180.29734 * 5 4 3 7 7 C 1.46504 * 119.99709 * 247.88943 * 6 5 4 8 8 C 1.50697 * 109.46906 * 90.00866 * 7 6 5 9 9 H 1.08004 * 120.00315 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00353 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99420 * 0.02562 * 10 8 7 12 12 Si 1.86802 * 120.00378 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.46889 * 59.99994 * 12 10 8 14 14 H 1.48501 * 109.47074 * 180.02562 * 12 10 8 15 15 H 1.48504 * 109.46838 * 300.00052 * 12 10 8 16 16 C 1.34777 * 120.00051 * 67.90141 * 6 5 4 17 17 O 1.21286 * 120.00048 * 4.72389 * 16 6 5 18 18 C 1.50700 * 119.99602 * 184.73635 * 16 6 5 19 19 S 1.81408 * 109.46740 * 179.97438 * 18 16 6 20 20 O 1.42100 * 108.57692 * 294.48036 * 19 18 16 21 21 O 1.42099 * 108.57788 * 65.51066 * 19 18 16 22 22 C 1.81408 * 101.92010 * 179.97438 * 19 18 16 23 23 C 1.52995 * 109.46768 * 184.99964 * 22 19 18 24 24 C 1.52995 * 109.47060 * 305.00214 * 22 19 18 25 25 C 1.38874 * 119.85729 * 0.27850 * 5 4 3 26 26 C 1.38114 * 119.93006 * 359.97438 * 25 5 4 27 27 H 1.08997 * 109.47146 * 270.23432 * 1 2 3 28 28 H 1.09000 * 109.47057 * 30.22851 * 1 2 3 29 29 H 1.08997 * 109.47241 * 150.23012 * 1 2 3 30 30 H 1.08000 * 119.96745 * 0.04534 * 3 2 1 31 31 H 1.07999 * 120.04037 * 179.73762 * 4 3 2 32 32 H 1.08998 * 109.47136 * 210.00180 * 7 6 5 33 33 H 1.08997 * 109.47384 * 330.00615 * 7 6 5 34 34 H 0.97011 * 119.99942 * 179.97438 * 11 10 8 35 35 H 1.09006 * 109.46923 * 299.99072 * 18 16 6 36 36 H 1.08999 * 109.47466 * 59.99499 * 18 16 6 37 37 H 1.09004 * 109.46822 * 65.00033 * 22 19 18 38 38 H 1.08995 * 109.47543 * 60.00172 * 23 22 19 39 39 H 1.09000 * 109.46857 * 180.02562 * 23 22 19 40 40 H 1.08999 * 109.47067 * 300.00048 * 23 22 19 41 41 H 1.09000 * 109.47321 * 180.02562 * 24 22 19 42 42 H 1.09004 * 109.47155 * 299.99615 * 24 22 19 43 43 H 1.09000 * 109.47644 * 59.99655 * 24 22 19 44 44 H 1.08001 * 120.03091 * 180.02562 * 25 5 4 45 45 H 1.08000 * 119.96158 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1969 1.1984 0.0000 4 6 3.5780 1.2018 -0.0058 5 6 4.2739 -0.0001 -0.0005 6 7 5.6731 -0.0001 0.0000 7 6 6.4059 -0.4826 -1.1732 8 6 6.6575 0.6660 -2.1157 9 1 6.3062 1.6564 -1.8661 10 6 7.3361 0.4528 -3.2969 11 7 7.7634 -0.7532 -3.6011 12 14 7.6473 1.8765 -4.4655 13 1 8.4488 2.9181 -3.7743 14 1 8.3902 1.3874 -5.6547 15 1 6.3496 2.4555 -4.8968 16 6 6.3466 0.4437 1.0798 17 8 5.7430 0.7622 2.0823 18 6 7.8498 0.5442 1.0412 19 16 8.4549 1.1696 2.6330 20 8 7.9937 2.5032 2.8003 21 8 8.1686 0.2052 3.6366 22 6 10.2484 1.2073 2.3633 23 6 10.9515 1.6001 3.6642 24 6 10.7272 -0.1774 1.9228 25 6 3.5780 -1.2019 0.0048 26 6 2.1968 -1.1984 0.0053 27 1 -0.3633 0.0042 1.0276 28 1 -0.3633 0.8879 -0.5174 29 1 -0.3633 -0.8920 -0.5102 30 1 1.6553 2.1327 0.0007 31 1 4.1164 2.1380 -0.0101 32 1 7.3583 -0.9083 -0.8570 33 1 5.8170 -1.2467 -1.6806 34 1 8.2405 -0.9034 -4.4324 35 1 8.2751 -0.4415 0.8524 36 1 8.1480 1.2271 0.2458 37 1 10.4840 1.9367 1.5884 38 1 10.7159 0.8707 4.4391 39 1 12.0291 1.6232 3.5021 40 1 10.6104 2.5866 3.9780 41 1 11.8049 -0.1549 1.7612 42 1 10.4915 -0.9069 2.6978 43 1 10.2262 -0.4573 0.9961 44 1 4.1163 -2.1382 0.0094 45 1 1.6551 -2.1327 0.0098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000726940289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:36 Heat of formation + Delta-G solvation = -107.214448 kcal Electronic energy + Delta-G solvation = -28048.227775 eV Core-core repulsion = 24157.128942 eV Total energy + Delta-G solvation = -3891.098833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.61993 -39.72296 -38.10471 -37.19924 -37.00369 -35.99192 -34.80371 -33.18280 -31.93767 -31.28195 -29.40338 -28.21150 -27.00796 -25.13859 -23.69971 -23.59936 -22.82247 -20.73128 -19.70856 -18.87622 -18.73102 -18.11596 -17.57048 -17.21354 -16.92372 -16.67157 -16.41264 -16.18985 -15.77487 -15.44363 -15.16623 -14.61280 -14.48429 -14.42349 -14.33919 -14.21950 -14.14342 -13.72212 -13.58202 -13.20108 -13.17780 -13.13948 -13.06809 -13.00307 -12.83477 -12.68214 -12.52663 -12.38449 -12.33618 -12.15696 -12.11848 -11.96636 -11.78325 -11.36201 -11.15999 -10.65401 -10.14774 -9.90791 -9.21986 -8.26568 -6.41451 -1.13925 0.28111 0.43754 1.30664 1.39785 1.43074 1.49785 1.69785 1.92414 2.36212 2.68178 2.77754 2.96614 3.04886 3.37106 3.58507 3.61216 3.90323 3.96127 4.01720 4.04619 4.19478 4.31341 4.44111 4.47466 4.51361 4.63162 4.65669 4.74505 4.80425 4.87073 4.87588 4.90994 5.03908 5.11029 5.11750 5.17638 5.23298 5.36028 5.46963 5.62627 5.63805 5.68223 5.95485 6.05223 6.26185 6.65614 6.94677 7.30117 8.79172 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008321 B = 0.004940 C = 0.003464 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3364.270947 B = 5666.653747 C = 8081.889248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.095 4.095 3 C -0.115 4.115 4 C -0.129 4.129 5 C 0.120 3.880 6 N -0.548 5.548 7 C 0.249 3.751 8 C -0.553 4.553 9 H 0.051 0.949 10 C 0.032 3.968 11 N -0.912 5.912 12 Si 0.950 3.050 13 H -0.264 1.264 14 H -0.278 1.278 15 H -0.280 1.280 16 C 0.535 3.465 17 O -0.583 6.583 18 C -0.645 4.645 19 S 2.432 3.568 20 O -0.974 6.974 21 O -0.964 6.964 22 C -0.543 4.543 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.134 4.134 26 C -0.110 4.110 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.147 0.853 31 H 0.103 0.897 32 H 0.051 0.949 33 H 0.024 0.976 34 H 0.271 0.729 35 H 0.185 0.815 36 H 0.180 0.820 37 H 0.168 0.832 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.109 0.891 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.125 0.875 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.042 -0.098 6.193 6.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.095 4.095 3 C -0.133 4.133 4 C -0.148 4.148 5 C 0.030 3.970 6 N -0.273 5.273 7 C 0.130 3.870 8 C -0.591 4.591 9 H 0.069 0.931 10 C -0.170 4.170 11 N -0.551 5.551 12 Si 0.775 3.225 13 H -0.188 1.188 14 H -0.203 1.203 15 H -0.206 1.206 16 C 0.324 3.676 17 O -0.465 6.465 18 C -0.771 4.771 19 S 2.616 3.384 20 O -0.971 6.971 21 O -0.961 6.961 22 C -0.658 4.658 23 C -0.211 4.211 24 C -0.218 4.218 25 C -0.153 4.153 26 C -0.128 4.128 27 H 0.100 0.900 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.165 0.835 31 H 0.121 0.879 32 H 0.068 0.932 33 H 0.042 0.958 34 H 0.080 0.920 35 H 0.202 0.798 36 H 0.198 0.802 37 H 0.186 0.814 38 H 0.092 0.908 39 H 0.134 0.866 40 H 0.089 0.911 41 H 0.128 0.872 42 H 0.096 0.904 43 H 0.099 0.901 44 H 0.143 0.857 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.321 0.163 7.269 7.278 hybrid contribution 0.762 0.496 -1.702 1.930 sum 1.084 0.659 5.567 5.710 Atomic orbital electron populations 1.20808 0.87995 1.04033 1.03325 1.20358 0.98212 0.92233 0.98717 1.21171 0.92274 0.99489 1.00403 1.21308 0.95813 0.96684 1.01010 1.17956 0.82795 0.94536 1.01751 1.45728 1.04316 1.61000 1.16280 1.19399 0.91887 0.94752 0.81006 1.21524 1.37481 0.95187 1.04929 0.93072 1.25535 0.94771 0.98043 0.98628 1.69976 1.37964 1.21828 1.25294 0.85721 0.78360 0.79770 0.78606 1.18830 1.20253 1.20580 1.19767 0.88848 0.76484 0.82543 1.90754 1.71045 1.52135 1.32590 1.30834 1.00740 1.17851 1.27715 1.07933 0.79978 0.74325 0.76198 1.93478 1.81118 1.37644 1.84897 1.93469 1.84734 1.63262 1.54664 1.29888 1.17416 1.08968 1.09498 1.21839 1.03935 1.02576 0.92728 1.21986 1.05948 0.90928 1.02922 1.21376 0.95749 0.96621 1.01549 1.21220 0.92364 0.99318 0.99902 0.90023 0.90480 0.89985 0.83544 0.87896 0.93154 0.95767 0.91981 0.79765 0.80210 0.81439 0.90788 0.86569 0.91109 0.87214 0.90400 0.90089 0.85666 0.82591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.94 10.01 71.24 0.71 -1.23 16 2 C -0.10 -2.67 5.88 -19.85 -0.12 -2.79 16 3 C -0.12 -3.73 9.69 22.25 0.22 -3.51 16 4 C -0.13 -5.27 9.55 22.39 0.21 -5.06 16 5 C 0.12 5.20 4.75 38.16 0.18 5.38 16 6 N -0.55 -24.74 2.51 -635.30 -1.59 -26.33 16 7 C 0.25 11.70 4.88 85.63 0.42 12.12 16 8 C -0.55 -27.95 9.16 25.60 0.23 -27.71 16 9 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 10 C 0.03 1.59 5.46 84.65 0.46 2.06 16 11 N -0.91 -47.31 13.29 21.45 0.28 -47.03 16 12 Si 0.95 39.92 29.54 68.60 2.03 41.95 16 13 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 14 H -0.28 -11.30 7.11 99.48 0.71 -10.59 16 15 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 16 C 0.53 23.95 7.55 87.66 0.66 24.61 16 17 O -0.58 -29.47 15.38 -0.18 0.00 -29.48 16 18 C -0.64 -22.17 4.35 71.24 0.31 -21.86 16 19 S 2.43 80.18 3.50 -56.49 -0.20 79.98 16 20 O -0.97 -39.70 17.95 -125.76 -2.26 -41.95 16 21 O -0.96 -37.56 17.91 -125.75 -2.25 -39.81 16 22 C -0.54 -10.69 3.35 30.59 0.10 -10.59 16 23 C -0.15 -2.60 9.19 71.98 0.66 -1.94 16 24 C -0.16 -2.62 8.90 71.98 0.64 -1.98 16 25 C -0.13 -4.98 9.69 22.39 0.22 -4.77 16 26 C -0.11 -3.27 9.69 22.25 0.22 -3.06 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 29 H 0.08 1.25 8.08 -2.39 -0.02 1.23 16 30 H 0.15 3.83 8.06 -2.91 -0.02 3.80 16 31 H 0.10 4.42 8.06 -2.91 -0.02 4.40 16 32 H 0.05 2.27 6.47 -2.39 -0.02 2.25 16 33 H 0.02 1.22 7.86 -2.39 -0.02 1.20 16 34 H 0.27 13.32 8.31 -92.70 -0.77 12.55 16 35 H 0.19 5.16 5.89 -2.39 -0.01 5.15 16 36 H 0.18 5.72 7.91 -2.39 -0.02 5.70 16 37 H 0.17 2.45 8.14 -2.39 -0.02 2.43 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.08 1.30 8.14 -2.38 -0.02 1.28 16 43 H 0.08 1.30 6.39 -2.39 -0.02 1.28 16 44 H 0.13 4.43 8.06 -2.91 -0.02 4.40 16 45 H 0.16 3.46 8.06 -2.91 -0.02 3.44 16 Total: -1.00 -77.61 389.52 2.12 -75.49 By element: Atomic # 1 Polarization: 26.54 SS G_CDS: 0.98 Total: 27.51 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 5.13 Total: -40.33 kcal Atomic # 7 Polarization: -72.05 SS G_CDS: -1.31 Total: -73.35 kcal Atomic # 8 Polarization: -106.73 SS G_CDS: -4.51 Total: -111.24 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 80.18 SS G_CDS: -0.20 Total: 79.98 kcal Total: -77.61 2.12 -75.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726940289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.720 kcal (2) G-P(sol) polarization free energy of solvation -77.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds