Wall clock time and date at job start Sat Apr 11 2020 05:38:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47063 * 2 1 4 4 C 1.53001 * 109.47001 * 119.99399 * 2 1 3 5 5 N 1.46503 * 109.46853 * 174.99827 * 4 2 1 6 6 C 1.46497 * 120.00292 * 275.00581 * 5 4 2 7 7 C 1.50699 * 109.47139 * 274.99597 * 6 5 4 8 8 H 1.08010 * 120.00037 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00253 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99836 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00181 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47289 * 59.99462 * 11 9 7 13 13 H 1.48500 * 109.47086 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46639 * 299.99761 * 11 9 7 15 15 S 1.65603 * 119.99689 * 95.00564 * 5 4 2 16 16 O 1.42100 * 106.40198 * 336.45949 * 15 5 4 17 17 O 1.42098 * 106.40233 * 203.54104 * 15 5 4 18 18 C 1.76195 * 107.21971 * 89.99779 * 15 5 4 19 19 C 1.38291 * 120.11873 * 90.00045 * 18 15 5 20 20 C 1.37929 * 120.35446 * 180.17352 * 19 18 15 21 21 C 1.39289 * 120.24278 * 0.06555 * 20 19 18 22 22 C 1.38981 * 118.85498 * 359.58943 * 21 20 19 23 23 C 1.37660 * 120.77699 * 0.54611 * 22 21 20 24 24 C 1.51649 * 106.97907 * 180.57567 * 22 21 20 25 25 C 1.54713 * 101.93881 * 15.71381 * 24 22 21 26 26 O 1.36126 * 129.87617 * 179.56466 * 21 20 19 27 27 H 1.09007 * 109.47263 * 300.00253 * 1 2 3 28 28 H 1.09001 * 109.47507 * 59.99943 * 1 2 3 29 29 H 1.09002 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47262 * 239.99778 * 2 1 3 31 31 H 1.09000 * 109.47450 * 59.99423 * 3 2 1 32 32 H 1.08997 * 109.47268 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47005 * 300.00364 * 3 2 1 34 34 H 1.09001 * 109.47012 * 55.00335 * 4 2 1 35 35 H 1.08995 * 109.47609 * 294.99868 * 4 2 1 36 36 H 1.08991 * 109.47230 * 34.99822 * 6 5 4 37 37 H 1.09000 * 109.46836 * 155.00451 * 6 5 4 38 38 H 0.97003 * 119.99749 * 180.02562 * 10 9 7 39 39 H 1.08007 * 119.81963 * 0.19665 * 19 18 15 40 40 H 1.07996 * 119.87833 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.98294 * 179.61345 * 23 22 21 42 42 H 1.09002 * 110.94508 * 257.54041 * 24 22 21 43 43 H 1.08997 * 110.93949 * 133.88365 * 24 22 21 44 44 H 1.09003 * 110.74698 * 92.94680 * 25 24 22 45 45 H 1.09001 * 110.74689 * 216.11069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1261 -1.9351 0.4662 7 6 4.2204 -3.1366 1.3710 8 1 3.8506 -3.0800 2.3842 9 6 4.7779 -4.3083 0.9051 10 7 5.2277 -4.3774 -0.3288 11 14 4.8942 -5.7978 2.0264 12 1 3.5319 -6.1970 2.4621 13 1 5.5289 -6.9218 1.2921 14 1 5.7150 -5.4584 3.2166 15 16 4.4427 0.3084 1.9432 16 8 3.6470 1.4802 2.0562 17 8 5.7018 0.2845 1.2849 18 6 4.7296 -0.2586 3.5865 19 6 5.8260 -1.0542 3.8647 20 6 6.0533 -1.5038 5.1487 21 6 5.1786 -1.1609 6.1771 22 6 4.0845 -0.3549 5.8862 23 6 3.8586 0.0901 4.6033 24 6 3.3331 -0.1421 7.1862 25 6 4.3793 -0.5846 8.2366 26 8 5.2080 -1.4966 7.4960 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9565 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6053 -1.7197 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 3.5238 -2.1845 -0.4073 37 1 5.1260 -1.6417 0.1466 38 1 5.6196 -5.2019 -0.6567 39 1 6.5082 -1.3247 3.0722 40 1 6.9121 -2.1243 5.3573 41 1 3.0008 0.7108 4.3905 42 1 2.4453 -0.7728 7.2309 43 1 3.0700 0.9076 7.3167 44 1 4.9606 0.2687 8.5859 45 1 3.8966 -1.0896 9.0734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000728713209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:41 Heat of formation + Delta-G solvation = -85.493351 kcal Electronic energy + Delta-G solvation = -28835.039348 eV Core-core repulsion = 24944.882412 eV Total energy + Delta-G solvation = -3890.156936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.12799 -37.39992 -37.19940 -36.51158 -35.21479 -33.74415 -32.76789 -32.11681 -30.24738 -29.25102 -27.44142 -26.75275 -24.96492 -23.80084 -22.66627 -22.32081 -21.81790 -19.75301 -18.34073 -17.46611 -17.28545 -16.84434 -16.63893 -16.30855 -16.16945 -15.34464 -14.56570 -14.32318 -14.23033 -14.13835 -13.67096 -13.57437 -13.28935 -13.09266 -12.81033 -12.69071 -12.51757 -12.32445 -12.15855 -11.99174 -11.93361 -11.54709 -11.49192 -11.28946 -11.11885 -11.09883 -10.96308 -10.84170 -10.79332 -10.54706 -10.36862 -10.34796 -10.20161 -9.96236 -9.72595 -8.84876 -8.50040 -8.38925 -7.99760 -6.10829 -4.17230 0.92410 1.22500 1.41007 3.09053 3.26653 3.32136 3.34362 3.46994 3.80949 4.25416 4.35831 4.37572 4.45103 4.74740 4.83960 4.96316 5.17032 5.22886 5.25905 5.28698 5.32785 5.40105 5.43336 5.54514 5.61353 5.66905 5.72206 5.96260 5.98123 6.08562 6.12221 6.20661 6.22203 6.26019 6.31169 6.34864 6.44535 6.61174 6.61481 6.73802 6.87373 7.11761 7.34379 7.43137 7.63926 7.86368 8.15222 8.87908 9.49191 10.96946 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008290 B = 0.006042 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.934875 B = 4633.360792 C = 6650.496366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C -0.138 4.138 4 C 0.138 3.862 5 N -0.978 5.978 6 C 0.245 3.755 7 C -0.541 4.541 8 H 0.061 0.939 9 C 0.067 3.933 10 N -0.889 5.889 11 Si 0.888 3.112 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.275 1.275 15 S 2.691 3.309 16 O -0.972 6.972 17 O -0.960 6.960 18 C -0.693 4.693 19 C 0.038 3.962 20 C -0.160 4.160 21 C 0.150 3.850 22 C -0.206 4.206 23 C 0.027 3.973 24 C -0.107 4.107 25 C 0.050 3.950 26 O -0.303 6.303 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.054 0.946 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.046 0.954 33 H 0.043 0.957 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.265 0.735 39 H 0.153 0.847 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.078 0.922 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.868 8.924 11.290 15.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.138 4.138 3 C -0.196 4.196 4 C 0.011 3.989 5 N -0.817 5.817 6 C 0.123 3.877 7 C -0.580 4.580 8 H 0.079 0.921 9 C -0.136 4.136 10 N -0.527 5.527 11 Si 0.716 3.284 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.200 1.200 15 S 2.781 3.219 16 O -0.963 6.963 17 O -0.950 6.950 18 C -0.778 4.778 19 C 0.018 3.982 20 C -0.179 4.179 21 C 0.104 3.896 22 C -0.208 4.208 23 C 0.007 3.993 24 C -0.144 4.144 25 C -0.025 4.025 26 O -0.217 6.217 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.074 0.926 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.100 0.900 35 H 0.083 0.917 36 H 0.060 0.940 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.171 0.829 40 H 0.153 0.847 41 H 0.155 0.845 42 H 0.109 0.891 43 H 0.111 0.889 44 H 0.096 0.904 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -5.328 9.363 10.938 15.352 hybrid contribution -0.072 -1.566 1.304 2.039 sum -5.400 7.797 12.242 15.486 Atomic orbital electron populations 1.21747 0.95235 1.01551 1.01375 1.21575 0.95291 0.97010 0.99957 1.21915 1.00833 0.95547 1.01306 1.21172 0.80059 1.01013 0.96618 1.57357 1.14289 1.44226 1.65813 1.19245 0.94217 0.82256 0.92012 1.21524 1.40627 0.96640 0.99226 0.92076 1.24901 0.95094 0.98581 0.95008 1.69917 1.39921 1.27621 1.15215 0.86712 0.78447 0.82370 0.80883 1.20246 1.21145 1.20024 1.01905 0.73397 0.73401 0.73204 1.93549 1.69976 1.45557 1.87186 1.93549 1.42053 1.86719 1.72683 1.31199 1.05815 1.16389 1.24399 1.20746 0.93458 0.88122 0.95829 1.20380 1.00598 1.05854 0.91082 1.19829 0.93211 0.92157 0.84397 1.20727 0.98317 1.05773 0.95952 1.19899 0.96157 0.93416 0.89803 1.21767 0.98601 1.03480 0.90549 1.23868 0.90881 0.92902 0.94833 1.86835 1.67418 1.51578 1.15836 0.92879 0.92908 0.92645 0.90486 0.91473 0.93536 0.93773 0.90034 0.91729 0.93987 0.92935 0.92529 0.82937 0.84723 0.84512 0.89058 0.88915 0.90392 0.87516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.19 37.16 0.34 -1.40 16 2 C -0.12 -1.82 3.13 -90.62 -0.28 -2.10 16 3 C -0.14 -2.18 7.62 37.16 0.28 -1.89 16 4 C 0.14 2.33 4.97 -4.04 -0.02 2.31 16 5 N -0.98 -19.56 2.49 -115.67 -0.29 -19.85 16 6 C 0.24 5.88 5.44 -5.20 -0.03 5.85 16 7 C -0.54 -13.93 9.38 -34.44 -0.32 -14.26 16 8 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 9 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 10 N -0.89 -25.01 13.29 55.43 0.74 -24.27 16 11 Si 0.89 20.82 29.54 -169.99 -5.02 15.80 16 12 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 13 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 14 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 15 S 2.69 52.61 4.86 -107.50 -0.52 52.09 16 16 O -0.97 -18.27 12.71 -57.17 -0.73 -18.99 16 17 O -0.96 -21.68 15.84 -57.17 -0.91 -22.58 16 18 C -0.69 -12.58 5.98 -39.52 -0.24 -12.82 16 19 C 0.04 0.69 9.50 -39.68 -0.38 0.31 16 20 C -0.16 -2.67 10.06 -39.30 -0.40 -3.07 16 21 C 0.15 2.37 7.04 -38.92 -0.27 2.10 16 22 C -0.21 -3.01 6.27 -104.09 -0.65 -3.67 16 23 C 0.03 0.42 9.51 -39.75 -0.38 0.04 16 24 C -0.11 -1.09 7.11 -26.51 -0.19 -1.27 16 25 C 0.05 0.47 8.01 38.06 0.30 0.78 16 26 O -0.30 -4.27 11.10 -20.14 -0.22 -4.50 16 27 H 0.05 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.08 1.27 8.08 -51.93 -0.42 0.85 16 31 H 0.07 1.03 7.45 -51.93 -0.39 0.65 16 32 H 0.05 0.82 5.78 -51.93 -0.30 0.52 16 33 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.08 1.39 8.11 -51.93 -0.42 0.97 16 35 H 0.06 0.96 7.61 -51.93 -0.40 0.57 16 36 H 0.04 1.05 8.05 -51.93 -0.42 0.63 16 37 H 0.05 1.38 6.91 -51.93 -0.36 1.02 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.15 2.85 7.62 -52.48 -0.40 2.45 16 40 H 0.13 1.99 8.06 -52.49 -0.42 1.56 16 41 H 0.14 1.88 7.63 -52.48 -0.40 1.48 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.11 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 376.38 15.07 5.67 5.67 Total: -1.00 -31.23 376.38 -10.45 -41.68 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -6.85 Total: 2.33 kcal Atomic # 6 Polarization: -25.06 SS G_CDS: -2.32 Total: -27.38 kcal Atomic # 7 Polarization: -44.57 SS G_CDS: 0.45 Total: -44.12 kcal Atomic # 8 Polarization: -44.22 SS G_CDS: -1.86 Total: -46.07 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 52.61 SS G_CDS: -0.52 Total: 52.09 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.23 -10.45 -41.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728713209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.809 kcal (2) G-P(sol) polarization free energy of solvation -31.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.454 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds