Wall clock time and date at job start Sat Apr 11 2020 05:38:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47063 * 2 1 4 4 C 1.53001 * 109.47001 * 119.99399 * 2 1 3 5 5 N 1.46503 * 109.46853 * 174.99827 * 4 2 1 6 6 C 1.46497 * 120.00292 * 275.00581 * 5 4 2 7 7 C 1.50699 * 109.47139 * 274.99597 * 6 5 4 8 8 H 1.08010 * 120.00037 * 0.02562 * 7 6 5 9 9 C 1.37870 * 120.00253 * 179.97438 * 7 6 5 10 10 N 1.31511 * 119.99836 * 0.02562 * 9 7 6 11 11 Si 1.86802 * 120.00181 * 180.02562 * 9 7 6 12 12 H 1.48499 * 109.47289 * 59.99462 * 11 9 7 13 13 H 1.48500 * 109.47086 * 180.02562 * 11 9 7 14 14 H 1.48508 * 109.46639 * 299.99761 * 11 9 7 15 15 S 1.65603 * 119.99689 * 95.00564 * 5 4 2 16 16 O 1.42100 * 106.40198 * 336.45949 * 15 5 4 17 17 O 1.42098 * 106.40233 * 203.54104 * 15 5 4 18 18 C 1.76195 * 107.21971 * 89.99779 * 15 5 4 19 19 C 1.38291 * 120.11873 * 90.00045 * 18 15 5 20 20 C 1.37929 * 120.35446 * 180.17352 * 19 18 15 21 21 C 1.39289 * 120.24278 * 0.06555 * 20 19 18 22 22 C 1.38981 * 118.85498 * 359.58943 * 21 20 19 23 23 C 1.37660 * 120.77699 * 0.54611 * 22 21 20 24 24 C 1.51649 * 106.97907 * 180.57567 * 22 21 20 25 25 C 1.54713 * 101.93881 * 15.71381 * 24 22 21 26 26 O 1.36126 * 129.87617 * 179.56466 * 21 20 19 27 27 H 1.09007 * 109.47263 * 300.00253 * 1 2 3 28 28 H 1.09001 * 109.47507 * 59.99943 * 1 2 3 29 29 H 1.09002 * 109.47345 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47262 * 239.99778 * 2 1 3 31 31 H 1.09000 * 109.47450 * 59.99423 * 3 2 1 32 32 H 1.08997 * 109.47268 * 180.02562 * 3 2 1 33 33 H 1.09001 * 109.47005 * 300.00364 * 3 2 1 34 34 H 1.09001 * 109.47012 * 55.00335 * 4 2 1 35 35 H 1.08995 * 109.47609 * 294.99868 * 4 2 1 36 36 H 1.08991 * 109.47230 * 34.99822 * 6 5 4 37 37 H 1.09000 * 109.46836 * 155.00451 * 6 5 4 38 38 H 0.97003 * 119.99749 * 180.02562 * 10 9 7 39 39 H 1.08007 * 119.81963 * 0.19665 * 19 18 15 40 40 H 1.07996 * 119.87833 * 180.02562 * 20 19 18 41 41 H 1.08003 * 119.98294 * 179.61345 * 23 22 21 42 42 H 1.09002 * 110.94508 * 257.54041 * 24 22 21 43 43 H 1.08997 * 110.93949 * 133.88365 * 24 22 21 44 44 H 1.09003 * 110.74698 * 92.94680 * 25 24 22 45 45 H 1.09001 * 110.74689 * 216.11069 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0399 -0.7211 1.2493 5 7 3.5000 -0.8263 1.1906 6 6 4.1261 -1.9351 0.4662 7 6 4.2204 -3.1366 1.3710 8 1 3.8506 -3.0800 2.3842 9 6 4.7779 -4.3083 0.9051 10 7 5.2277 -4.3774 -0.3288 11 14 4.8942 -5.7978 2.0264 12 1 3.5319 -6.1970 2.4621 13 1 5.5289 -6.9218 1.2921 14 1 5.7150 -5.4584 3.2166 15 16 4.4427 0.3084 1.9432 16 8 3.6470 1.4802 2.0562 17 8 5.7018 0.2845 1.2849 18 6 4.7296 -0.2586 3.5865 19 6 5.8260 -1.0542 3.8647 20 6 6.0533 -1.5038 5.1487 21 6 5.1786 -1.1609 6.1771 22 6 4.0845 -0.3549 5.8862 23 6 3.8586 0.0901 4.6033 24 6 3.3331 -0.1421 7.1862 25 6 4.3793 -0.5846 8.2366 26 8 5.2080 -1.4966 7.4960 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.6766 1.9565 0.8899 32 1 3.1299 1.4426 -0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6053 -1.7197 1.2953 35 1 1.7516 -0.1582 2.1370 36 1 3.5238 -2.1845 -0.4073 37 1 5.1260 -1.6417 0.1466 38 1 5.6196 -5.2019 -0.6567 39 1 6.5082 -1.3247 3.0722 40 1 6.9121 -2.1243 5.3573 41 1 3.0008 0.7108 4.3905 42 1 2.4453 -0.7728 7.2309 43 1 3.0700 0.9076 7.3167 44 1 4.9606 0.2687 8.5859 45 1 3.8966 -1.0896 9.0734 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000728713209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:40 Heat of formation + Delta-G solvation = -104.363758 kcal Electronic energy + Delta-G solvation = -28835.857630 eV Core-core repulsion = 24944.882412 eV Total energy + Delta-G solvation = -3890.975218 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.19275 -38.65409 -38.59307 -38.12278 -36.84125 -35.42608 -33.91758 -33.79060 -31.48620 -30.28476 -29.26810 -27.92253 -26.51310 -24.84266 -24.30472 -23.69364 -22.92422 -21.04966 -19.83197 -18.74709 -18.61914 -18.50432 -18.12358 -17.80892 -17.18385 -16.94780 -16.29991 -15.68995 -15.58092 -15.29247 -15.10546 -14.89191 -14.39411 -14.34108 -14.12041 -14.05556 -13.86422 -13.73467 -13.63704 -13.36145 -13.08356 -13.01592 -12.97073 -12.73818 -12.72412 -12.45665 -12.40209 -12.26598 -12.11481 -12.05380 -11.93149 -11.71975 -11.64767 -11.55651 -11.36272 -10.57170 -10.10073 -9.73619 -9.48952 -8.16739 -6.29467 -0.51510 -0.18196 0.16830 1.39736 1.41173 1.48420 1.97084 2.17127 2.37248 2.45158 2.85843 3.14875 3.21026 3.49209 3.60416 3.79598 3.93703 4.08389 4.10648 4.13332 4.17126 4.20325 4.38562 4.45491 4.54849 4.74889 4.75835 4.79236 4.85052 4.87141 4.94666 4.99168 5.02206 5.04266 5.10575 5.11007 5.23119 5.32029 5.33236 5.39599 5.49769 5.50420 5.64861 5.77517 5.97775 5.98189 6.11453 6.82180 7.40215 8.90925 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008290 B = 0.006042 C = 0.004209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3376.934875 B = 4633.360792 C = 6650.496366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C -0.139 4.139 4 C 0.129 3.871 5 N -0.982 5.982 6 C 0.262 3.738 7 C -0.540 4.540 8 H 0.064 0.936 9 C 0.018 3.982 10 N -0.925 5.925 11 Si 0.946 3.054 12 H -0.267 1.267 13 H -0.284 1.284 14 H -0.271 1.271 15 S 2.700 3.300 16 O -0.965 6.965 17 O -1.001 7.001 18 C -0.706 4.706 19 C 0.013 3.987 20 C -0.173 4.173 21 C 0.148 3.852 22 C -0.203 4.203 23 C 0.022 3.978 24 C -0.103 4.103 25 C 0.043 3.957 26 O -0.316 6.316 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.073 0.927 32 H 0.018 0.982 33 H 0.062 0.938 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.027 0.973 37 H 0.020 0.980 38 H 0.266 0.734 39 H 0.133 0.867 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.107 0.893 43 H 0.121 0.879 44 H 0.096 0.904 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.269 9.400 14.524 19.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.138 4.138 3 C -0.196 4.196 4 C 0.003 3.997 5 N -0.820 5.820 6 C 0.138 3.862 7 C -0.579 4.579 8 H 0.082 0.918 9 C -0.182 4.182 10 N -0.564 5.564 11 Si 0.772 3.228 12 H -0.192 1.192 13 H -0.209 1.209 14 H -0.196 1.196 15 S 2.793 3.207 16 O -0.956 6.956 17 O -0.991 6.991 18 C -0.795 4.795 19 C -0.006 4.006 20 C -0.193 4.193 21 C 0.101 3.899 22 C -0.205 4.205 23 C 0.002 3.998 24 C -0.139 4.139 25 C -0.031 4.031 26 O -0.230 6.230 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.092 0.908 32 H 0.038 0.962 33 H 0.081 0.919 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.045 0.955 37 H 0.038 0.962 38 H 0.075 0.925 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.125 0.875 43 H 0.139 0.861 44 H 0.114 0.886 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -7.760 9.866 14.162 18.924 hybrid contribution 0.663 -1.637 0.433 1.819 sum -7.097 8.229 14.595 18.196 Atomic orbital electron populations 1.21702 0.92343 1.02317 1.02875 1.21568 0.97661 0.96314 0.98298 1.21922 0.99096 0.96026 1.02579 1.21470 0.78068 1.01576 0.98536 1.57235 1.15787 1.42947 1.66011 1.18740 0.92608 0.83090 0.91765 1.21763 1.39764 0.97017 0.99334 0.91763 1.25668 0.94958 1.01379 0.96216 1.70037 1.41120 1.28354 1.16909 0.85782 0.78781 0.79142 0.79119 1.19212 1.20899 1.19646 1.01383 0.72499 0.73327 0.73535 1.93539 1.69536 1.45103 1.87400 1.93492 1.44055 1.87284 1.74296 1.30850 1.07013 1.17822 1.23767 1.20662 0.93928 0.89672 0.96380 1.20485 1.01597 1.06226 0.90942 1.19970 0.93106 0.91672 0.85152 1.21238 0.98230 1.04002 0.97048 1.20165 0.96217 0.93525 0.89852 1.21955 0.98663 1.05730 0.87594 1.24318 0.90538 0.93301 0.94927 1.86830 1.68368 1.52793 1.14961 0.91231 0.91571 0.92278 0.92498 0.90810 0.96240 0.91885 0.90350 0.89234 0.95544 0.96172 0.92528 0.84929 0.83703 0.82249 0.87505 0.86078 0.88572 0.84279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 9.19 71.98 0.66 -2.36 16 2 C -0.12 -3.57 3.13 -10.79 -0.03 -3.60 16 3 C -0.14 -4.26 7.62 71.98 0.55 -3.71 16 4 C 0.13 4.29 4.97 86.38 0.43 4.72 16 5 N -0.98 -40.48 2.49 -519.86 -1.30 -41.78 16 6 C 0.26 13.25 5.44 85.63 0.47 13.71 16 7 C -0.54 -28.57 9.38 25.60 0.24 -28.33 16 8 H 0.06 3.30 7.81 -2.91 -0.02 3.28 16 9 C 0.02 0.96 5.46 84.65 0.46 1.42 16 10 N -0.92 -53.76 13.29 21.44 0.28 -53.48 16 11 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 12 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 13 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 14 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 15 S 2.70 108.87 4.86 -56.49 -0.27 108.60 16 16 O -0.97 -36.06 12.71 -128.00 -1.63 -37.69 16 17 O -1.00 -48.25 15.84 -128.00 -2.03 -50.27 16 18 C -0.71 -25.90 5.98 22.31 0.13 -25.76 16 19 C 0.01 0.50 9.50 22.21 0.21 0.71 16 20 C -0.17 -5.81 10.06 22.45 0.23 -5.58 16 21 C 0.15 4.40 7.04 22.70 0.16 4.56 16 22 C -0.20 -5.38 6.27 -19.52 -0.12 -5.50 16 23 C 0.02 0.65 9.51 22.16 0.21 0.86 16 24 C -0.10 -1.60 7.11 30.74 0.22 -1.38 16 25 C 0.04 0.62 8.01 72.57 0.58 1.20 16 26 O -0.32 -7.98 11.10 -94.99 -1.05 -9.03 16 27 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 28 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.06 1.93 8.08 -2.39 -0.02 1.91 16 31 H 0.07 2.14 7.45 -2.39 -0.02 2.12 16 32 H 0.02 0.68 5.78 -2.39 -0.01 0.66 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.08 2.65 8.11 -2.39 -0.02 2.63 16 35 H 0.09 2.51 7.61 -2.39 -0.02 2.49 16 36 H 0.03 1.40 8.05 -2.39 -0.02 1.38 16 37 H 0.02 1.15 6.91 -2.39 -0.02 1.13 16 38 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 39 H 0.13 5.42 7.62 -2.91 -0.02 5.39 16 40 H 0.15 4.34 8.06 -2.91 -0.02 4.32 16 41 H 0.16 3.91 7.63 -2.91 -0.02 3.89 16 42 H 0.11 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.12 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.05 16 45 H 0.14 1.13 8.14 -2.39 -0.02 1.11 16 Total: -1.00 -69.98 376.38 1.41 -68.57 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: 0.98 Total: 19.10 kcal Atomic # 6 Polarization: -53.45 SS G_CDS: 4.39 Total: -49.06 kcal Atomic # 7 Polarization: -94.24 SS G_CDS: -1.01 Total: -95.25 kcal Atomic # 8 Polarization: -92.28 SS G_CDS: -4.71 Total: -96.99 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: 108.87 SS G_CDS: -0.27 Total: 108.60 kcal Total: -69.98 1.41 -68.57 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000728713209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.792 kcal (2) G-P(sol) polarization free energy of solvation -69.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds