Wall clock time and date at job start Sat Apr 11 2020 05:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 C 1.53007 * 109.47090 * 240.00696 * 2 1 3 5 5 C 1.52992 * 109.47500 * 120.00350 * 2 1 3 6 6 N 1.46506 * 109.47220 * 63.63947 * 5 2 1 7 7 C 1.46498 * 119.99482 * 85.22263 * 6 5 2 8 8 C 1.50706 * 109.46934 * 74.69957 * 7 6 5 9 9 H 1.08001 * 119.99854 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00092 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99816 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99985 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47057 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47105 * 119.99645 * 12 10 8 15 15 H 1.48501 * 109.46971 * 239.99540 * 12 10 8 16 16 S 1.65597 * 120.00128 * 265.22947 * 6 5 2 17 17 O 1.42094 * 106.40358 * 23.53583 * 16 6 5 18 18 O 1.42102 * 106.39960 * 156.46136 * 16 6 5 19 19 C 1.76203 * 107.21754 * 269.99501 * 16 6 5 20 20 C 1.37909 * 120.08624 * 115.00082 * 19 16 6 21 21 C 1.38384 * 120.17242 * 179.97438 * 20 19 16 22 22 C 1.38426 * 120.34743 * 359.97438 * 21 20 19 23 23 C 1.37869 * 120.17580 * 0.03053 * 22 21 20 24 24 C 1.39830 * 120.08923 * 294.73059 * 19 16 6 25 25 C 1.47174 * 120.17127 * 0.02562 * 24 19 16 26 26 O 1.21249 * 119.99960 * 180.02562 * 25 24 19 27 27 H 1.09003 * 109.46974 * 299.99462 * 1 2 3 28 28 H 1.08997 * 109.47759 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47486 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47375 * 300.00413 * 3 2 1 32 32 H 1.09003 * 109.46751 * 60.00401 * 3 2 1 33 33 H 1.09005 * 109.46541 * 308.81975 * 4 2 1 34 34 H 1.08997 * 109.47203 * 68.81621 * 4 2 1 35 35 H 1.08999 * 109.46822 * 188.82311 * 4 2 1 36 36 H 1.09008 * 109.47133 * 303.64684 * 5 2 1 37 37 H 1.08994 * 109.47294 * 183.64334 * 5 2 1 38 38 H 1.09003 * 109.47090 * 194.69421 * 7 6 5 39 39 H 1.08998 * 109.47987 * 314.70140 * 7 6 5 40 40 H 0.97006 * 120.00188 * 180.02562 * 11 10 8 41 41 H 1.08000 * 119.91465 * 0.02562 * 20 19 16 42 42 H 1.07993 * 119.82751 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.91657 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.09356 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.00073 * 0.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0400 -0.7213 1.2491 6 7 1.6246 -2.1256 1.2060 7 6 2.4371 -3.1078 0.4841 8 6 3.6748 -3.4217 1.2846 9 1 3.8398 -2.9375 2.2358 10 6 4.5964 -4.3269 0.8027 11 7 4.3952 -4.9168 -0.3553 12 14 6.1301 -4.7165 1.7954 13 1 6.1199 -3.9264 3.0527 14 1 6.1544 -6.1652 2.1208 15 1 7.3355 -4.3671 1.0015 16 16 0.2367 -2.6024 1.9732 17 8 -0.5796 -1.4445 2.0822 18 8 -0.1884 -3.7953 1.3287 19 6 0.6791 -3.0559 3.6174 20 6 0.2017 -2.3285 4.6874 21 6 0.5476 -2.6834 5.9795 22 6 1.3739 -3.7700 6.2088 23 6 1.8594 -4.5072 5.1498 24 6 1.5106 -4.1577 3.8411 25 6 2.0200 -4.9426 2.7051 26 8 2.7404 -5.8977 2.9027 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.5536 -1.6932 -1.3317 34 1 1.8110 -0.1244 -2.1323 35 1 3.1185 -0.8597 -1.1741 36 1 1.6243 -0.2466 2.1380 37 1 3.1280 -0.6651 1.2823 38 1 1.8587 -4.0199 0.3368 39 1 2.7250 -2.6997 -0.4848 40 1 5.0434 -5.5540 -0.6942 41 1 -0.4444 -1.4801 4.5166 42 1 0.1709 -2.1096 6.8132 43 1 1.6397 -4.0406 7.2201 44 1 2.5043 -5.3545 5.3303 45 1 1.7522 -4.6679 1.6955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751076938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:52 Heat of formation + Delta-G solvation = -70.529519 kcal Electronic energy + Delta-G solvation = -30036.912938 eV Core-core repulsion = 26147.404883 eV Total energy + Delta-G solvation = -3889.508055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.40705 -38.10295 -37.55919 -36.71684 -35.42235 -34.28503 -32.39301 -31.41343 -30.96121 -28.01696 -26.93704 -26.71927 -25.17351 -24.47837 -23.09817 -22.28571 -20.68862 -18.95600 -18.35951 -17.56237 -17.00871 -16.63762 -16.22501 -15.83192 -15.22442 -14.73741 -14.57014 -14.34233 -14.08529 -13.99034 -13.81324 -13.60233 -13.57018 -12.96780 -12.64928 -12.50215 -12.37334 -12.22724 -12.14215 -11.69647 -11.60756 -11.52871 -11.43208 -11.29015 -11.25822 -11.05592 -10.91206 -10.81296 -10.61175 -10.41442 -10.23173 -10.09238 -10.06369 -9.79376 -9.28202 -8.84753 -8.78053 -8.57652 -8.11965 -6.28230 -4.34787 0.63190 0.92821 1.21472 2.97548 3.25203 3.32068 3.34488 3.43981 3.89733 4.16730 4.30666 4.61545 4.80664 4.91852 4.99547 5.12138 5.16042 5.17738 5.23552 5.29388 5.48479 5.60227 5.74430 5.87929 5.94940 5.96531 6.02714 6.06023 6.13756 6.16199 6.20230 6.24326 6.32451 6.36816 6.50057 6.57655 6.59874 6.60768 6.78302 6.89059 6.90849 7.21238 7.23725 7.41192 7.69322 7.94796 8.22097 8.70245 9.32755 10.77549 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.007833 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.049181 B = 3573.826871 C = 5555.352174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.088 4.088 3 C -0.135 4.135 4 C -0.140 4.140 5 C 0.143 3.857 6 N -0.977 5.977 7 C 0.221 3.779 8 C -0.555 4.555 9 H 0.065 0.935 10 C 0.083 3.917 11 N -0.867 5.867 12 Si 0.889 3.111 13 H -0.272 1.272 14 H -0.276 1.276 15 H -0.282 1.282 16 S 2.678 3.322 17 O -0.963 6.963 18 O -0.959 6.959 19 C -0.639 4.639 20 C -0.038 4.038 21 C -0.128 4.128 22 C -0.084 4.084 23 C -0.096 4.096 24 C -0.065 4.065 25 C 0.362 3.638 26 O -0.454 6.454 27 H 0.068 0.932 28 H 0.045 0.955 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.042 0.958 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.087 0.913 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.269 0.731 41 H 0.144 0.856 42 H 0.130 0.870 43 H 0.129 0.871 44 H 0.137 0.863 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.171 8.951 6.644 12.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.090 4.090 3 C -0.193 4.193 4 C -0.197 4.197 5 C 0.017 3.983 6 N -0.816 5.816 7 C 0.100 3.900 8 C -0.592 4.592 9 H 0.083 0.917 10 C -0.125 4.125 11 N -0.503 5.503 12 Si 0.717 3.283 13 H -0.197 1.197 14 H -0.202 1.202 15 H -0.208 1.208 16 S 2.767 3.233 17 O -0.953 6.953 18 O -0.949 6.949 19 C -0.724 4.724 20 C -0.057 4.057 21 C -0.147 4.147 22 C -0.102 4.102 23 C -0.115 4.115 24 C -0.067 4.067 25 C 0.221 3.779 26 O -0.327 6.327 27 H 0.087 0.913 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.061 0.939 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.105 0.895 38 H 0.073 0.927 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.161 0.839 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.155 0.845 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.525 8.236 6.277 12.240 hybrid contribution 1.488 -0.310 1.375 2.049 sum -5.038 7.926 7.651 12.114 Atomic orbital electron populations 1.21967 0.94138 1.01527 1.01436 1.20999 0.96140 0.95132 0.96699 1.21783 1.00973 0.95227 1.01365 1.22011 1.01881 1.00353 0.95457 1.21219 1.01416 0.79369 0.96307 1.57316 1.43807 1.15335 1.65093 1.19822 0.89788 0.86566 0.93870 1.21582 1.05948 1.25516 1.06191 0.91660 1.24868 0.97990 0.94913 0.94681 1.69898 1.35771 1.26495 1.18101 0.86547 0.82468 0.79060 0.80265 1.19692 1.20177 1.20836 1.02456 0.73889 0.73554 0.73379 1.93558 1.65947 1.48857 1.86925 1.93590 1.80258 1.47791 1.73279 1.31573 1.10463 1.05406 1.24936 1.20913 0.95850 0.97181 0.91763 1.21388 0.98740 0.97617 0.96989 1.21376 0.95341 0.94383 0.99107 1.21587 0.98427 0.99704 0.91800 1.21235 0.93967 0.94120 0.97403 1.25180 0.77451 0.81610 0.93648 1.90384 1.28103 1.26004 1.88251 0.91320 0.93628 0.93704 0.92558 0.92814 0.92867 0.91604 0.93862 0.91819 0.91489 0.89454 0.92683 0.91764 0.92120 0.83865 0.85207 0.85284 0.84469 0.84454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.99 6.87 37.16 0.26 -1.74 16 2 C -0.09 -1.28 0.85 -154.51 -0.13 -1.41 16 3 C -0.14 -1.61 8.46 37.16 0.31 -1.30 16 4 C -0.14 -2.17 6.88 37.16 0.26 -1.92 16 5 C 0.14 2.29 4.52 -4.04 -0.02 2.27 16 6 N -0.98 -18.32 2.28 -115.66 -0.26 -18.59 16 7 C 0.22 4.90 3.92 -5.19 -0.02 4.88 16 8 C -0.55 -13.45 5.75 -34.44 -0.20 -13.65 16 9 H 0.07 1.58 7.81 -52.49 -0.41 1.17 16 10 C 0.08 2.14 5.39 -17.82 -0.10 2.04 16 11 N -0.87 -23.33 13.29 55.43 0.74 -22.60 16 12 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 13 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 14 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 15 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 16 S 2.68 49.98 4.29 -107.50 -0.46 49.52 16 17 O -0.96 -17.03 12.34 -57.17 -0.71 -17.74 16 18 O -0.96 -20.57 14.89 -57.17 -0.85 -21.42 16 19 C -0.64 -11.37 5.95 -39.11 -0.23 -11.61 16 20 C -0.04 -0.55 9.54 -39.65 -0.38 -0.93 16 21 C -0.13 -1.62 10.04 -39.46 -0.40 -2.01 16 22 C -0.08 -1.11 10.03 -39.65 -0.40 -1.51 16 23 C -0.10 -1.62 9.60 -39.10 -0.38 -1.99 16 24 C -0.06 -1.27 5.87 -105.06 -0.62 -1.88 16 25 C 0.36 8.24 7.36 34.36 0.25 8.49 16 26 O -0.45 -11.27 17.13 5.58 0.10 -11.17 16 27 H 0.07 1.01 7.34 -51.93 -0.38 0.63 16 28 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.04 0.74 5.81 -51.93 -0.30 0.44 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 1.13 6.30 -51.93 -0.33 0.81 16 34 H 0.04 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.06 1.04 7.63 -51.93 -0.40 0.65 16 36 H 0.07 0.96 7.62 -51.92 -0.40 0.56 16 37 H 0.09 1.42 7.89 -51.93 -0.41 1.01 16 38 H 0.06 1.35 5.11 -51.93 -0.27 1.08 16 39 H 0.06 1.44 4.85 -51.93 -0.25 1.19 16 40 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 41 H 0.14 1.80 7.33 -52.49 -0.38 1.42 16 42 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 43 H 0.13 1.26 8.06 -52.49 -0.42 0.83 16 44 H 0.14 2.23 7.65 -52.49 -0.40 1.83 16 45 H 0.14 3.29 2.18 -52.48 -0.11 3.18 16 LS Contribution 358.72 15.07 5.41 5.41 Total: -1.00 -29.25 358.72 -8.98 -38.22 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -6.13 Total: 4.56 kcal Atomic # 6 Polarization: -20.48 SS G_CDS: -1.78 Total: -22.26 kcal Atomic # 7 Polarization: -41.66 SS G_CDS: 0.47 Total: -41.18 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: -1.46 Total: -50.32 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 49.98 SS G_CDS: -0.46 Total: 49.52 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -29.25 -8.98 -38.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751076938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.305 kcal (2) G-P(sol) polarization free energy of solvation -29.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds