Wall clock time and date at job start Sat Apr 11 2020 05:38:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47133 * 2 1 4 4 C 1.53007 * 109.47090 * 240.00696 * 2 1 3 5 5 C 1.52992 * 109.47500 * 120.00350 * 2 1 3 6 6 N 1.46506 * 109.47220 * 63.63947 * 5 2 1 7 7 C 1.46498 * 119.99482 * 85.22263 * 6 5 2 8 8 C 1.50706 * 109.46934 * 74.69957 * 7 6 5 9 9 H 1.08001 * 119.99854 * 359.97438 * 8 7 6 10 10 C 1.37882 * 120.00092 * 179.97438 * 8 7 6 11 11 N 1.31509 * 119.99816 * 359.97438 * 10 8 7 12 12 Si 1.86797 * 119.99985 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.47057 * 359.97438 * 12 10 8 14 14 H 1.48504 * 109.47105 * 119.99645 * 12 10 8 15 15 H 1.48501 * 109.46971 * 239.99540 * 12 10 8 16 16 S 1.65597 * 120.00128 * 265.22947 * 6 5 2 17 17 O 1.42094 * 106.40358 * 23.53583 * 16 6 5 18 18 O 1.42102 * 106.39960 * 156.46136 * 16 6 5 19 19 C 1.76203 * 107.21754 * 269.99501 * 16 6 5 20 20 C 1.37909 * 120.08624 * 115.00082 * 19 16 6 21 21 C 1.38384 * 120.17242 * 179.97438 * 20 19 16 22 22 C 1.38426 * 120.34743 * 359.97438 * 21 20 19 23 23 C 1.37869 * 120.17580 * 0.03053 * 22 21 20 24 24 C 1.39830 * 120.08923 * 294.73059 * 19 16 6 25 25 C 1.47174 * 120.17127 * 0.02562 * 24 19 16 26 26 O 1.21249 * 119.99960 * 180.02562 * 25 24 19 27 27 H 1.09003 * 109.46974 * 299.99462 * 1 2 3 28 28 H 1.08997 * 109.47759 * 59.99839 * 1 2 3 29 29 H 1.09001 * 109.47114 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47486 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47375 * 300.00413 * 3 2 1 32 32 H 1.09003 * 109.46751 * 60.00401 * 3 2 1 33 33 H 1.09005 * 109.46541 * 308.81975 * 4 2 1 34 34 H 1.08997 * 109.47203 * 68.81621 * 4 2 1 35 35 H 1.08999 * 109.46822 * 188.82311 * 4 2 1 36 36 H 1.09008 * 109.47133 * 303.64684 * 5 2 1 37 37 H 1.08994 * 109.47294 * 183.64334 * 5 2 1 38 38 H 1.09003 * 109.47090 * 194.69421 * 7 6 5 39 39 H 1.08998 * 109.47987 * 314.70140 * 7 6 5 40 40 H 0.97006 * 120.00188 * 180.02562 * 11 10 8 41 41 H 1.08000 * 119.91465 * 0.02562 * 20 19 16 42 42 H 1.07993 * 119.82751 * 179.97438 * 21 20 19 43 43 H 1.08002 * 119.91657 * 179.97438 * 22 21 20 44 44 H 1.07998 * 120.09356 * 179.97438 * 23 22 21 45 45 H 1.08003 * 120.00073 * 0.02562 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 2.0400 -0.7213 1.2491 6 7 1.6246 -2.1256 1.2060 7 6 2.4371 -3.1078 0.4841 8 6 3.6748 -3.4217 1.2846 9 1 3.8398 -2.9375 2.2358 10 6 4.5964 -4.3269 0.8027 11 7 4.3952 -4.9168 -0.3553 12 14 6.1301 -4.7165 1.7954 13 1 6.1199 -3.9264 3.0527 14 1 6.1544 -6.1652 2.1208 15 1 7.3355 -4.3671 1.0015 16 16 0.2367 -2.6024 1.9732 17 8 -0.5796 -1.4445 2.0822 18 8 -0.1884 -3.7953 1.3287 19 6 0.6791 -3.0559 3.6174 20 6 0.2017 -2.3285 4.6874 21 6 0.5476 -2.6834 5.9795 22 6 1.3739 -3.7700 6.2088 23 6 1.8594 -4.5072 5.1498 24 6 1.5106 -4.1577 3.8411 25 6 2.0200 -4.9426 2.7051 26 8 2.7404 -5.8977 2.9027 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9563 0.8901 33 1 1.5536 -1.6932 -1.3317 34 1 1.8110 -0.1244 -2.1323 35 1 3.1185 -0.8597 -1.1741 36 1 1.6243 -0.2466 2.1380 37 1 3.1280 -0.6651 1.2823 38 1 1.8587 -4.0199 0.3368 39 1 2.7250 -2.6997 -0.4848 40 1 5.0434 -5.5540 -0.6942 41 1 -0.4444 -1.4801 4.5166 42 1 0.1709 -2.1096 6.8132 43 1 1.6397 -4.0406 7.2201 44 1 2.5043 -5.3545 5.3303 45 1 1.7522 -4.6679 1.6955 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751076938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:51 Heat of formation + Delta-G solvation = -88.193452 kcal Electronic energy + Delta-G solvation = -30037.678904 eV Core-core repulsion = 26147.404883 eV Total energy + Delta-G solvation = -3890.274021 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.83680 -39.42198 -39.08598 -38.28203 -36.94446 -35.86504 -34.17199 -32.67086 -32.20767 -29.70019 -28.01916 -28.01035 -26.67599 -25.91681 -24.39978 -23.95937 -22.13738 -20.27854 -19.73568 -18.97397 -18.65901 -18.33477 -17.68914 -17.28588 -16.75715 -16.38835 -16.01048 -15.66440 -15.44657 -15.32262 -15.23237 -15.15971 -14.96366 -14.47378 -14.23589 -13.97741 -13.64038 -13.57597 -13.51797 -13.17327 -13.09441 -12.96840 -12.84283 -12.71162 -12.63686 -12.54150 -12.30394 -12.30191 -12.23757 -11.89845 -11.69279 -11.53425 -11.39749 -11.31797 -10.66265 -10.49884 -10.40549 -10.09890 -9.67452 -8.26565 -6.35637 -0.73294 -0.50260 -0.00045 1.26460 1.37493 1.41637 1.56395 1.96100 2.35789 2.52023 2.75201 3.10759 3.17490 3.36340 3.76621 3.89581 3.91642 4.01555 4.11233 4.20794 4.24313 4.32054 4.51447 4.60732 4.69615 4.78131 4.81289 4.91462 4.96485 4.98754 5.06962 5.08259 5.17090 5.18773 5.21740 5.26182 5.34256 5.38806 5.43697 5.52230 5.59694 5.66373 5.73256 5.75958 5.89283 6.03845 6.47348 6.75383 7.33561 8.79545 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009010 B = 0.007833 C = 0.005039 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3107.049181 B = 3573.826871 C = 5555.352174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.086 4.086 3 C -0.130 4.130 4 C -0.137 4.137 5 C 0.134 3.866 6 N -0.978 5.978 7 C 0.237 3.763 8 C -0.541 4.541 9 H 0.064 0.936 10 C 0.042 3.958 11 N -0.901 5.901 12 Si 0.928 3.072 13 H -0.266 1.266 14 H -0.292 1.292 15 H -0.271 1.271 16 S 2.683 3.317 17 O -0.953 6.953 18 O -0.997 6.997 19 C -0.649 4.649 20 C -0.040 4.040 21 C -0.104 4.104 22 C -0.071 4.071 23 C -0.107 4.107 24 C -0.103 4.103 25 C 0.361 3.639 26 O -0.489 6.489 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.020 0.980 30 H 0.058 0.942 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.062 0.938 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.028 0.972 39 H 0.058 0.942 40 H 0.267 0.733 41 H 0.169 0.831 42 H 0.183 0.817 43 H 0.175 0.825 44 H 0.133 0.867 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.973 12.030 9.985 17.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.088 4.088 3 C -0.188 4.188 4 C -0.194 4.194 5 C 0.009 3.991 6 N -0.817 5.817 7 C 0.114 3.886 8 C -0.579 4.579 9 H 0.082 0.918 10 C -0.162 4.162 11 N -0.539 5.539 12 Si 0.754 3.246 13 H -0.190 1.190 14 H -0.219 1.219 15 H -0.196 1.196 16 S 2.775 3.225 17 O -0.943 6.943 18 O -0.988 6.988 19 C -0.736 4.736 20 C -0.059 4.059 21 C -0.123 4.123 22 C -0.088 4.088 23 C -0.126 4.126 24 C -0.105 4.105 25 C 0.223 3.777 26 O -0.365 6.365 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.039 0.961 30 H 0.077 0.923 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.081 0.919 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.100 0.900 38 H 0.046 0.954 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.186 0.814 42 H 0.201 0.799 43 H 0.192 0.808 44 H 0.151 0.849 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.340 11.368 9.595 16.588 hybrid contribution 1.593 -1.211 0.496 2.062 sum -5.746 10.156 10.092 15.428 Atomic orbital electron populations 1.21969 0.94233 1.00261 1.02594 1.21011 0.96000 0.96662 0.95162 1.21740 1.01145 0.93050 1.02823 1.21953 1.00646 0.99594 0.97239 1.21505 1.01414 0.78025 0.98172 1.57190 1.43278 1.15938 1.65252 1.19386 0.89063 0.86415 0.93737 1.21721 1.05990 1.24404 1.05835 0.91795 1.25422 1.00093 0.95358 0.95314 1.69976 1.36694 1.27770 1.19477 0.85943 0.81005 0.77819 0.79786 1.18964 1.21914 1.19584 1.02056 0.73701 0.72978 0.73727 1.93555 1.65611 1.48083 1.87088 1.93541 1.81047 1.49465 1.74734 1.31289 1.11445 1.05931 1.24940 1.21376 0.95446 0.97202 0.91873 1.22022 0.96250 0.96607 0.97402 1.21893 0.93733 0.93262 0.99947 1.21770 0.98724 1.00340 0.91719 1.20834 0.96915 0.95575 0.97204 1.25198 0.76383 0.81317 0.94815 1.90345 1.29809 1.27473 1.88907 0.90726 0.91894 0.96137 0.92311 0.91489 0.91307 0.94256 0.91876 0.93223 0.89204 0.89981 0.95449 0.92452 0.92345 0.81399 0.79935 0.80763 0.84916 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.79 6.87 71.98 0.49 -3.30 16 2 C -0.09 -2.42 0.85 -52.18 -0.04 -2.46 16 3 C -0.13 -2.73 8.46 71.98 0.61 -2.12 16 4 C -0.14 -4.31 6.88 71.98 0.50 -3.81 16 5 C 0.13 4.19 4.52 86.38 0.39 4.58 16 6 N -0.98 -37.56 2.28 -519.84 -1.19 -38.74 16 7 C 0.24 11.12 3.92 85.64 0.34 11.46 16 8 C -0.54 -27.27 5.75 25.60 0.15 -27.12 16 9 H 0.06 3.18 7.81 -2.91 -0.02 3.15 16 10 C 0.04 2.23 5.39 84.66 0.46 2.69 16 11 N -0.90 -51.05 13.29 21.45 0.28 -50.77 16 12 Si 0.93 44.22 29.54 68.60 2.03 46.24 16 13 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 14 H -0.29 -14.63 7.11 99.48 0.71 -13.92 16 15 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 16 S 2.68 101.16 4.29 -56.49 -0.24 100.91 16 17 O -0.95 -32.50 12.34 -128.00 -1.58 -34.08 16 18 O -1.00 -45.22 14.89 -128.00 -1.91 -47.12 16 19 C -0.65 -22.34 5.95 22.58 0.13 -22.21 16 20 C -0.04 -1.01 9.54 22.23 0.21 -0.79 16 21 C -0.10 -1.99 10.04 22.35 0.22 -1.76 16 22 C -0.07 -1.52 10.03 22.23 0.22 -1.30 16 23 C -0.11 -3.40 9.60 22.58 0.22 -3.19 16 24 C -0.10 -4.02 5.87 -20.15 -0.12 -4.14 16 25 C 0.36 17.30 7.36 70.17 0.52 17.81 16 26 O -0.49 -25.65 17.13 -2.93 -0.05 -25.70 16 27 H 0.07 2.01 7.34 -2.39 -0.02 2.00 16 28 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.02 0.66 5.81 -2.39 -0.01 0.65 16 30 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.04 1.42 6.30 -2.38 -0.02 1.40 16 34 H 0.06 1.68 8.12 -2.39 -0.02 1.66 16 35 H 0.05 1.67 7.63 -2.39 -0.02 1.65 16 36 H 0.09 2.37 7.62 -2.38 -0.02 2.35 16 37 H 0.08 2.64 7.89 -2.39 -0.02 2.62 16 38 H 0.03 1.47 5.11 -2.39 -0.01 1.46 16 39 H 0.06 2.76 4.85 -2.39 -0.01 2.74 16 40 H 0.27 14.55 8.31 -92.70 -0.77 13.78 16 41 H 0.17 3.39 7.33 -2.91 -0.02 3.37 16 42 H 0.18 1.69 8.06 -2.91 -0.02 1.67 16 43 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.13 4.26 7.65 -2.91 -0.02 4.24 16 45 H 0.12 6.05 2.18 -2.91 -0.01 6.04 16 Total: -1.00 -68.39 358.72 2.65 -65.74 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 1.01 Total: 19.20 kcal Atomic # 6 Polarization: -39.97 SS G_CDS: 4.29 Total: -35.68 kcal Atomic # 7 Polarization: -88.61 SS G_CDS: -0.90 Total: -89.51 kcal Atomic # 8 Polarization: -103.37 SS G_CDS: -3.54 Total: -106.91 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 101.16 SS G_CDS: -0.24 Total: 100.91 kcal Total: -68.39 2.65 -65.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751076938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.453 kcal (2) G-P(sol) polarization free energy of solvation -68.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds