Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 125.20368 * 2 1 4 4 C 1.38425 * 114.92174 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.54253 * 179.73216 * 4 3 2 6 6 C 1.52998 * 109.47097 * 265.02544 * 5 4 3 7 7 C 1.53002 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46736 * 179.97438 * 7 6 5 9 9 O 1.20822 * 120.00440 * 0.02562 * 8 7 6 10 10 O 1.34232 * 119.99696 * 179.97438 * 8 7 6 11 11 C 1.45197 * 116.99687 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47012 * 180.02562 * 11 10 8 13 13 O 1.21291 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00362 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00321 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47337 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00139 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00191 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00175 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47132 * 89.99869 * 20 18 16 22 22 H 1.48494 * 109.47365 * 210.00275 * 20 18 16 23 23 H 1.48499 * 109.47050 * 330.00088 * 20 18 16 24 24 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 25 25 C 1.50699 * 125.20296 * 179.97438 * 24 4 3 26 26 S 1.75887 * 125.19993 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47125 * 89.99462 * 1 2 3 28 28 H 1.08998 * 109.47162 * 209.99957 * 1 2 3 29 29 H 1.09004 * 109.46782 * 329.99301 * 1 2 3 30 30 H 1.08001 * 122.54319 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.46788 * 25.02291 * 5 4 3 32 32 H 1.09003 * 109.47150 * 145.02136 * 5 4 3 33 33 H 1.08998 * 109.47058 * 300.00022 * 6 5 4 34 34 H 1.08997 * 109.47033 * 59.99916 * 6 5 4 35 35 H 1.08991 * 109.47299 * 300.00234 * 7 6 5 36 36 H 1.08997 * 109.46981 * 60.00325 * 7 6 5 37 37 H 1.09002 * 109.47227 * 299.99816 * 11 10 8 38 38 H 1.08996 * 109.47411 * 60.00818 * 11 10 8 39 39 H 0.96995 * 119.99535 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.47156 * 300.00857 * 15 14 12 41 41 H 1.08996 * 109.46524 * 60.00372 * 15 14 12 42 42 H 0.97003 * 119.99896 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.47039 * 90.00840 * 25 24 4 44 44 H 1.08998 * 109.47062 * 210.00206 * 25 24 4 45 45 H 1.08994 * 109.47215 * 330.00270 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 -0.0053 6 6 5.1001 2.2302 -1.4439 7 6 6.1397 3.3528 -1.4499 8 6 6.5713 3.6301 -2.8669 9 8 6.0959 2.9954 -3.7785 10 8 7.4832 4.5830 -3.1164 11 6 7.8510 4.7960 -4.5047 12 6 8.8786 5.8951 -4.5892 13 8 9.2635 6.4444 -3.5786 14 7 9.3707 6.2669 -5.7875 15 6 10.3693 7.3358 -5.8697 16 6 10.7512 7.5568 -7.3106 17 1 10.2953 6.9610 -8.0875 18 6 11.6825 8.5196 -7.6370 19 7 12.0154 8.7129 -8.8946 20 14 12.4705 9.5506 -6.2933 21 1 13.7027 8.8767 -5.8107 22 1 12.8180 10.8886 -6.8355 23 1 11.5172 9.7059 -5.1654 24 6 3.9751 -0.4478 0.0016 25 6 5.3861 -0.9771 0.0018 26 16 2.5209 -1.4373 0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.8670 2.0895 -0.0004 31 1 4.2265 2.8497 0.4252 32 1 5.5273 1.6451 0.5849 33 1 5.5359 1.3286 -1.8745 34 1 4.2353 2.5332 -2.0340 35 1 5.7036 4.2541 -1.0195 36 1 7.0046 3.0501 -0.8597 37 1 8.2684 3.8766 -4.9152 38 1 6.9669 5.0803 -5.0753 39 1 9.0632 5.8274 -6.5956 40 1 9.9519 8.2553 -5.4595 41 1 11.2532 7.0517 -5.2986 42 1 12.6709 9.3900 -9.1242 43 1 5.7264 -1.1040 1.0296 44 1 5.4136 -1.9384 -0.5113 45 1 6.0388 -0.2719 -0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000753494058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -116.952211 kcal Electronic energy + Delta-G solvation = -25155.444165 eV Core-core repulsion = 21263.923071 eV Total energy + Delta-G solvation = -3891.521094 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67958 -39.23051 -38.85203 -36.57378 -34.93449 -34.38923 -33.15447 -32.44619 -30.24260 -29.66215 -28.49552 -27.00206 -24.85317 -23.53868 -22.16292 -21.48300 -20.66457 -20.13493 -18.70590 -17.77863 -17.53167 -17.50243 -16.92237 -16.49482 -15.70700 -15.49883 -15.23559 -14.96992 -14.73263 -14.54662 -14.10121 -13.81573 -13.67935 -13.62871 -13.21827 -13.18585 -13.09946 -12.76937 -12.58879 -12.46385 -12.38505 -12.11076 -12.08926 -11.94955 -11.64447 -11.52954 -11.10498 -11.08595 -10.92169 -10.84061 -10.73841 -10.63337 -10.01584 -9.55853 -9.36099 -8.83243 -8.78029 -8.62067 -8.28648 -6.25506 -4.28720 0.63221 1.24861 1.63375 2.07791 2.25163 2.44252 3.01291 3.24219 3.31125 3.38842 3.85514 4.29654 4.30481 4.40557 4.56155 4.60283 4.67195 4.83750 4.85017 4.96278 5.04365 5.08044 5.09044 5.09742 5.15688 5.16724 5.21426 5.23494 5.25316 5.33259 5.38219 5.46904 5.56408 5.66780 5.81650 5.95177 6.09689 6.23731 6.30558 6.71558 6.99245 7.07779 7.30199 7.61561 8.03404 8.39727 8.66446 8.78306 9.33524 10.86240 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033668 B = 0.001445 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.460602 B =19375.612105 C =19451.812945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.181 4.181 3 C -0.130 4.130 4 C -0.100 4.100 5 C -0.060 4.060 6 C -0.103 4.103 7 C -0.113 4.113 8 C 0.459 3.541 9 O -0.511 6.511 10 O -0.331 6.331 11 C 0.049 3.951 12 C 0.502 3.498 13 O -0.537 6.537 14 N -0.700 5.700 15 C 0.222 3.778 16 C -0.547 4.547 17 H 0.081 0.919 18 C 0.079 3.921 19 N -0.891 5.891 20 Si 0.877 3.123 21 H -0.272 1.272 22 H -0.283 1.283 23 H -0.260 1.260 24 C -0.177 4.177 25 C -0.085 4.085 26 S 0.085 5.915 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.138 0.862 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.098 0.902 39 H 0.399 0.601 40 H 0.028 0.972 41 H 0.023 0.977 42 H 0.268 0.732 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.144 -20.155 20.487 35.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.298 4.298 3 C -0.160 4.160 4 C -0.112 4.112 5 C -0.100 4.100 6 C -0.141 4.141 7 C -0.151 4.151 8 C 0.302 3.698 9 O -0.399 6.399 10 O -0.246 6.246 11 C -0.028 4.028 12 C 0.285 3.715 13 O -0.415 6.415 14 N -0.350 5.350 15 C 0.100 3.900 16 C -0.585 4.585 17 H 0.099 0.901 18 C -0.125 4.125 19 N -0.527 5.527 20 Si 0.703 3.297 21 H -0.198 1.198 22 H -0.208 1.208 23 H -0.185 1.185 24 C -0.294 4.294 25 C -0.144 4.144 26 S 0.350 5.650 27 H 0.093 0.907 28 H 0.086 0.914 29 H 0.095 0.905 30 H 0.156 0.844 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.127 0.873 36 H 0.126 0.874 37 H 0.116 0.884 38 H 0.116 0.884 39 H 0.233 0.767 40 H 0.046 0.954 41 H 0.041 0.959 42 H 0.078 0.922 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -21.154 -21.377 20.776 36.553 hybrid contribution 0.557 1.809 -0.145 1.898 sum -20.597 -19.568 20.632 35.112 Atomic orbital electron populations 1.20332 0.87866 1.03069 1.02806 1.24376 0.99848 0.95608 1.10010 1.19961 0.92365 0.99295 1.04405 1.18692 0.94494 0.93844 1.04162 1.20310 0.96827 0.96104 0.96716 1.21411 0.98343 0.97811 0.96498 1.21424 1.01374 1.01843 0.90411 1.23852 0.76218 0.76769 0.92932 1.90678 1.53802 1.48238 1.47161 1.86564 1.55338 1.53204 1.29522 1.22805 0.99363 0.99817 0.80862 1.19949 0.82770 0.84001 0.84795 1.90700 1.60236 1.55509 1.35027 1.46071 1.43044 1.38884 1.06993 1.19554 0.86678 0.85426 0.98297 1.21068 1.25424 1.21466 0.90496 0.90126 1.24785 0.95731 0.96405 0.95611 1.69879 1.32466 1.33576 1.16828 0.86815 0.80495 0.79959 0.82419 1.19789 1.20822 1.18478 1.24253 0.98956 0.95862 1.10331 1.20376 0.89823 1.01427 1.02731 1.84222 0.96732 1.09720 1.74295 0.90715 0.91422 0.90521 0.84389 0.90523 0.90562 0.90733 0.90682 0.87332 0.87377 0.88356 0.88351 0.76708 0.95428 0.95872 0.92179 0.90724 0.91337 0.90161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.38 36.01 0.37 -0.05 16 2 C -0.18 -1.36 6.51 -36.00 -0.23 -1.60 16 3 C -0.13 -1.01 9.83 -41.21 -0.41 -1.41 16 4 C -0.10 -0.78 5.06 -106.25 -0.54 -1.32 16 5 C -0.06 -0.37 4.84 -27.88 -0.14 -0.51 16 6 C -0.10 -0.78 4.43 -26.73 -0.12 -0.90 16 7 C -0.11 -0.89 5.81 -27.88 -0.16 -1.05 16 8 C 0.46 5.64 7.96 36.01 0.29 5.92 16 9 O -0.51 -7.36 15.73 -18.75 -0.29 -7.65 16 10 O -0.33 -4.87 9.75 -45.91 -0.45 -5.32 16 11 C 0.05 0.71 5.94 36.01 0.21 0.92 16 12 C 0.50 9.49 7.91 -10.99 -0.09 9.41 16 13 O -0.54 -12.30 16.50 -14.11 -0.23 -12.53 16 14 N -0.70 -13.81 5.55 -61.47 -0.34 -14.15 16 15 C 0.22 5.36 4.50 -5.19 -0.02 5.34 16 16 C -0.55 -14.77 9.83 -34.44 -0.34 -15.11 16 17 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 18 C 0.08 2.20 5.47 -17.82 -0.10 2.10 16 19 N -0.89 -26.15 13.96 55.43 0.77 -25.38 16 20 Si 0.88 21.13 27.47 -169.99 -4.67 16.46 16 21 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.26 -6.23 6.54 56.52 0.37 -5.86 16 24 C -0.18 -1.39 6.51 -36.00 -0.23 -1.63 16 25 C -0.09 -0.51 9.79 36.01 0.35 -0.16 16 26 S 0.09 0.66 23.31 -107.50 -2.51 -1.85 16 27 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 31 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 32 H 0.08 0.40 7.52 -51.93 -0.39 0.01 16 33 H 0.07 0.64 7.24 -51.93 -0.38 0.26 16 34 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 35 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.10 1.24 8.13 -51.93 -0.42 0.82 16 38 H 0.10 1.25 8.13 -51.93 -0.42 0.83 16 39 H 0.40 6.80 8.32 -40.82 -0.34 6.46 16 40 H 0.03 0.70 7.20 -51.93 -0.37 0.33 16 41 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 42 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 43 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 44 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.08 0.46 6.50 -51.93 -0.34 0.12 16 LS Contribution 395.82 15.07 5.96 5.96 Total: -1.00 -34.25 395.82 -9.76 -44.00 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -6.86 Total: 0.49 kcal Atomic # 6 Polarization: 1.10 SS G_CDS: -1.15 Total: -0.04 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.43 Total: -39.53 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.98 Total: -25.50 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Atomic # 16 Polarization: 0.66 SS G_CDS: -2.51 Total: -1.85 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.25 -9.76 -44.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753494058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.948 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds