Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.33383 * 125.20368 * 2 1 4 4 C 1.38425 * 114.92174 * 179.97438 * 3 2 1 5 5 C 1.50704 * 122.54253 * 179.73216 * 4 3 2 6 6 C 1.52998 * 109.47097 * 265.02544 * 5 4 3 7 7 C 1.53002 * 109.46910 * 179.97438 * 6 5 4 8 8 C 1.50702 * 109.46736 * 179.97438 * 7 6 5 9 9 O 1.20822 * 120.00440 * 0.02562 * 8 7 6 10 10 O 1.34232 * 119.99696 * 179.97438 * 8 7 6 11 11 C 1.45197 * 116.99687 * 180.02562 * 10 8 7 12 12 C 1.50699 * 109.47012 * 180.02562 * 11 10 8 13 13 O 1.21291 * 119.99849 * 0.02562 * 12 11 10 14 14 N 1.34777 * 120.00362 * 179.97438 * 12 11 10 15 15 C 1.46503 * 120.00321 * 179.97438 * 14 12 11 16 16 C 1.50697 * 109.47337 * 180.02562 * 15 14 12 17 17 H 1.08002 * 119.99699 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00139 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00191 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 120.00175 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.47132 * 89.99869 * 20 18 16 22 22 H 1.48494 * 109.47365 * 210.00275 * 20 18 16 23 23 H 1.48499 * 109.47050 * 330.00088 * 20 18 16 24 24 C 1.33390 * 114.92123 * 359.97438 * 4 3 2 25 25 C 1.50699 * 125.20296 * 179.97438 * 24 4 3 26 26 S 1.75887 * 125.19993 * 179.97438 * 2 1 3 27 27 H 1.08999 * 109.47125 * 89.99462 * 1 2 3 28 28 H 1.08998 * 109.47162 * 209.99957 * 1 2 3 29 29 H 1.09004 * 109.46782 * 329.99301 * 1 2 3 30 30 H 1.08001 * 122.54319 * 359.97438 * 3 2 1 31 31 H 1.09004 * 109.46788 * 25.02291 * 5 4 3 32 32 H 1.09003 * 109.47150 * 145.02136 * 5 4 3 33 33 H 1.08998 * 109.47058 * 300.00022 * 6 5 4 34 34 H 1.08997 * 109.47033 * 59.99916 * 6 5 4 35 35 H 1.08991 * 109.47299 * 300.00234 * 7 6 5 36 36 H 1.08997 * 109.46981 * 60.00325 * 7 6 5 37 37 H 1.09002 * 109.47227 * 299.99816 * 11 10 8 38 38 H 1.08996 * 109.47411 * 60.00818 * 11 10 8 39 39 H 0.96995 * 119.99535 * 0.02562 * 14 12 11 40 40 H 1.09001 * 109.47156 * 300.00857 * 15 14 12 41 41 H 1.08996 * 109.46524 * 60.00372 * 15 14 12 42 42 H 0.97003 * 119.99896 * 180.02562 * 19 18 16 43 43 H 1.09007 * 109.47039 * 90.00840 * 25 24 4 44 44 H 1.08998 * 109.47062 * 210.00206 * 25 24 4 45 45 H 1.08994 * 109.47215 * 330.00270 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2760 1.0899 0.0000 4 6 3.6380 0.8428 0.0006 5 6 4.6624 1.9481 -0.0053 6 6 5.1001 2.2302 -1.4439 7 6 6.1397 3.3528 -1.4499 8 6 6.5713 3.6301 -2.8669 9 8 6.0959 2.9954 -3.7785 10 8 7.4832 4.5830 -3.1164 11 6 7.8510 4.7960 -4.5047 12 6 8.8786 5.8951 -4.5892 13 8 9.2635 6.4444 -3.5786 14 7 9.3707 6.2669 -5.7875 15 6 10.3693 7.3358 -5.8697 16 6 10.7512 7.5568 -7.3106 17 1 10.2953 6.9610 -8.0875 18 6 11.6825 8.5196 -7.6370 19 7 12.0154 8.7129 -8.8946 20 14 12.4705 9.5506 -6.2933 21 1 13.7027 8.8767 -5.8107 22 1 12.8180 10.8886 -6.8355 23 1 11.5172 9.7059 -5.1654 24 6 3.9751 -0.4478 0.0016 25 6 5.3861 -0.9771 0.0018 26 16 2.5209 -1.4373 0.0006 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5140 30 1 1.8670 2.0895 -0.0004 31 1 4.2265 2.8497 0.4252 32 1 5.5273 1.6451 0.5849 33 1 5.5359 1.3286 -1.8745 34 1 4.2353 2.5332 -2.0340 35 1 5.7036 4.2541 -1.0195 36 1 7.0046 3.0501 -0.8597 37 1 8.2684 3.8766 -4.9152 38 1 6.9669 5.0803 -5.0753 39 1 9.0632 5.8274 -6.5956 40 1 9.9519 8.2553 -5.4595 41 1 11.2532 7.0517 -5.2986 42 1 12.6709 9.3900 -9.1242 43 1 5.7264 -1.1040 1.0296 44 1 5.4136 -1.9384 -0.5113 45 1 6.0388 -0.2719 -0.5126 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000753494058.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -136.650948 kcal Electronic energy + Delta-G solvation = -25156.298367 eV Core-core repulsion = 21263.923071 eV Total energy + Delta-G solvation = -3892.375295 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.73252 -40.44741 -39.69876 -37.65621 -36.20430 -35.54157 -34.46583 -33.69287 -31.28692 -30.56275 -29.47284 -28.35750 -25.40682 -24.44315 -23.81656 -22.11650 -21.73078 -21.47308 -19.43238 -19.20124 -18.66937 -18.10214 -18.07975 -17.88232 -17.04782 -16.79175 -16.51793 -15.96951 -15.70852 -15.52346 -15.23280 -14.82069 -14.62793 -14.35812 -14.26098 -14.09057 -14.08242 -13.76683 -13.68438 -13.62316 -13.26773 -13.08360 -12.96701 -12.70864 -12.69479 -12.51167 -12.16596 -12.03488 -11.93487 -11.90240 -11.69666 -11.66459 -11.59471 -11.43709 -10.96556 -10.92491 -10.04573 -9.34450 -9.16953 -8.40222 -6.48131 0.08313 0.70798 1.08283 1.14267 1.28362 1.34062 1.37544 1.48166 1.51468 1.78552 2.28275 2.51840 2.95219 3.61543 3.70429 3.79804 3.92500 4.03568 4.05923 4.07862 4.13582 4.35942 4.40177 4.48808 4.60165 4.66022 4.70917 4.71801 4.74309 4.74869 4.82649 4.92199 5.00187 5.03647 5.11996 5.12822 5.22633 5.27992 5.32319 5.39531 5.43665 5.57869 5.71852 6.05254 6.51466 6.62239 6.73469 7.11165 7.26660 8.74330 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.033668 B = 0.001445 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 831.460602 B =19375.612105 C =19451.812945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.188 4.188 3 C -0.144 4.144 4 C -0.110 4.110 5 C -0.054 4.054 6 C -0.094 4.094 7 C -0.106 4.106 8 C 0.459 3.541 9 O -0.535 6.535 10 O -0.348 6.348 11 C 0.057 3.943 12 C 0.505 3.495 13 O -0.577 6.577 14 N -0.698 5.698 15 C 0.232 3.768 16 C -0.550 4.550 17 H 0.061 0.939 18 C 0.027 3.973 19 N -0.931 5.931 20 Si 0.938 3.062 21 H -0.264 1.264 22 H -0.274 1.274 23 H -0.258 1.258 24 C -0.189 4.189 25 C -0.085 4.085 26 S 0.065 5.935 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.088 0.912 30 H 0.150 0.850 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.059 0.941 35 H 0.130 0.870 36 H 0.131 0.869 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.412 0.588 40 H 0.018 0.982 41 H 0.017 0.983 42 H 0.273 0.727 43 H 0.085 0.915 44 H 0.068 0.932 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.679 -20.284 22.267 37.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.305 4.305 3 C -0.174 4.174 4 C -0.122 4.122 5 C -0.093 4.093 6 C -0.132 4.132 7 C -0.144 4.144 8 C 0.304 3.696 9 O -0.425 6.425 10 O -0.264 6.264 11 C -0.019 4.019 12 C 0.290 3.710 13 O -0.458 6.458 14 N -0.349 5.349 15 C 0.109 3.891 16 C -0.588 4.588 17 H 0.079 0.921 18 C -0.173 4.173 19 N -0.569 5.569 20 Si 0.761 3.239 21 H -0.189 1.189 22 H -0.199 1.199 23 H -0.182 1.182 24 C -0.306 4.306 25 C -0.144 4.144 26 S 0.330 5.670 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.168 0.832 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.147 0.853 36 H 0.149 0.851 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.248 0.752 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.087 0.913 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -21.714 -21.537 22.548 37.996 hybrid contribution 0.646 1.776 -0.733 2.027 sum -21.068 -19.760 21.816 36.197 Atomic orbital electron populations 1.20412 0.86436 1.03945 1.03324 1.24718 1.00950 0.95244 1.09632 1.20218 0.92605 0.99955 1.04603 1.18942 0.94972 0.94268 1.04024 1.20300 0.96991 0.96200 0.95831 1.21306 0.97572 0.97148 0.97181 1.21588 1.02236 1.02757 0.87777 1.24691 0.75025 0.75523 0.94327 1.90672 1.54534 1.48977 1.48308 1.86571 1.56270 1.54273 1.29281 1.22678 0.98758 0.98748 0.81761 1.20601 0.82675 0.84176 0.83499 1.90677 1.61722 1.57113 1.36244 1.45876 1.42495 1.38211 1.08328 1.19173 0.87459 0.86414 0.96065 1.21280 1.25022 1.20934 0.91534 0.92133 1.25598 0.96407 0.97706 0.97624 1.69984 1.33514 1.34675 1.18745 0.85852 0.79698 0.78680 0.79642 1.18936 1.19895 1.18249 1.24542 0.99529 0.96037 1.10508 1.20432 0.88967 1.01496 1.03482 1.84241 0.97518 1.10592 1.74683 0.90301 0.90843 0.89346 0.83220 0.89166 0.89231 0.91914 0.92171 0.85252 0.85138 0.86185 0.86235 0.75152 0.96446 0.96528 0.91815 0.89666 0.91274 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.38 71.24 0.74 -0.02 16 2 C -0.19 -2.69 6.51 24.59 0.16 -2.53 16 3 C -0.14 -2.06 9.83 21.22 0.21 -1.86 16 4 C -0.11 -1.58 5.06 -20.92 -0.11 -1.68 16 5 C -0.05 -0.54 4.84 29.85 0.14 -0.40 16 6 C -0.09 -1.26 4.43 30.59 0.14 -1.12 16 7 C -0.11 -1.39 5.81 29.85 0.17 -1.21 16 8 C 0.46 10.33 7.96 71.24 0.57 10.90 16 9 O -0.54 -14.58 15.73 21.98 0.35 -14.24 16 10 O -0.35 -9.54 9.75 -45.09 -0.44 -9.98 16 11 C 0.06 1.55 5.94 71.24 0.42 1.97 16 12 C 0.50 18.46 7.91 87.66 0.69 19.16 16 13 O -0.58 -25.94 16.50 15.73 0.26 -25.68 16 14 N -0.70 -26.93 5.55 -466.78 -2.59 -29.52 16 15 C 0.23 11.10 4.50 85.63 0.38 11.48 16 16 C -0.55 -29.81 9.83 25.60 0.25 -29.56 16 17 H 0.06 3.44 7.84 -2.91 -0.02 3.42 16 18 C 0.03 1.51 5.47 84.65 0.46 1.98 16 19 N -0.93 -55.00 13.96 21.45 0.30 -54.70 16 20 Si 0.94 43.24 27.47 68.60 1.88 45.13 16 21 H -0.26 -11.79 7.11 99.48 0.71 -11.09 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.26 -11.74 6.54 99.48 0.65 -11.09 16 24 C -0.19 -2.82 6.51 24.59 0.16 -2.66 16 25 C -0.09 -0.93 9.79 71.24 0.70 -0.24 16 26 S 0.06 0.98 23.31 -56.49 -1.32 -0.34 16 27 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 29 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 31 H 0.09 0.69 8.11 -2.39 -0.02 0.67 16 32 H 0.09 0.69 7.52 -2.39 -0.02 0.67 16 33 H 0.06 0.99 7.24 -2.39 -0.02 0.97 16 34 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.13 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.13 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.12 2.74 8.13 -2.39 -0.02 2.72 16 38 H 0.12 2.75 8.13 -2.39 -0.02 2.73 16 39 H 0.41 13.66 8.32 -92.71 -0.77 12.89 16 40 H 0.02 0.88 7.20 -2.39 -0.02 0.86 16 41 H 0.02 0.83 7.57 -2.39 -0.02 0.81 16 42 H 0.27 15.02 8.31 -92.71 -0.77 14.24 16 43 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 44 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.08 0.84 6.50 -2.39 -0.02 0.82 16 Total: -1.00 -73.49 395.82 3.72 -69.78 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.18 Total: 15.34 kcal Atomic # 6 Polarization: -0.89 SS G_CDS: 5.10 Total: 4.21 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -2.29 Total: -84.22 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: 0.17 Total: -49.90 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -1.32 Total: -0.34 kcal Total: -73.49 3.72 -69.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000753494058.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.871 kcal (2) G-P(sol) polarization free energy of solvation -73.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds