Wall clock time and date at job start Sat Apr 11 2020 05:37:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.39734 * 125.77895 * 2 1 4 4 C 1.36144 * 107.86163 * 180.15368 * 3 2 1 5 5 N 1.39384 * 126.26806 * 179.88553 * 4 3 2 6 6 C 1.34777 * 119.99688 * 359.40732 * 5 4 3 7 7 O 1.21593 * 119.99949 * 0.28162 * 6 5 4 8 8 C 1.47672 * 119.99878 * 180.27961 * 6 5 4 9 9 C 1.41518 * 126.51763 * 179.71514 * 8 6 5 10 10 C 1.35363 * 105.50330 * 179.83985 * 9 8 6 11 11 N 1.35035 * 107.22828 * 0.41876 * 10 9 8 12 12 C 1.46505 * 124.88510 * 179.72571 * 11 10 9 13 13 C 1.52991 * 109.47596 * 124.96965 * 12 11 10 14 14 F 1.39893 * 109.47474 * 174.99986 * 13 12 11 15 15 F 1.39902 * 109.47590 * 295.00451 * 13 12 11 16 16 N 1.28463 * 110.23823 * 359.72207 * 11 10 9 17 17 N 1.35812 * 107.46948 * 359.61879 * 4 3 2 18 18 C 1.46502 * 126.08942 * 180.24407 * 17 4 3 19 19 C 1.50698 * 109.47331 * 90.00082 * 18 17 4 20 20 H 1.07998 * 119.99765 * 359.97438 * 19 18 17 21 21 C 1.37877 * 120.00025 * 179.97438 * 19 18 17 22 22 N 1.31519 * 120.00096 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00097 * 179.97438 * 21 19 18 24 24 H 1.48497 * 109.46852 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46930 * 120.00188 * 23 21 19 26 26 H 1.48496 * 109.47192 * 240.00075 * 23 21 19 27 27 N 1.30835 * 125.77953 * 179.72764 * 2 1 3 28 28 H 1.08993 * 109.47425 * 270.24989 * 1 2 3 29 29 H 1.09005 * 109.46776 * 30.24998 * 1 2 3 30 30 H 1.09003 * 109.47168 * 150.24846 * 1 2 3 31 31 H 1.08001 * 126.07379 * 0.05782 * 3 2 1 32 32 H 0.97001 * 120.00524 * 179.69270 * 5 4 3 33 33 H 1.08005 * 127.25360 * 359.96340 * 9 8 6 34 34 H 1.08002 * 126.38901 * 180.11876 * 10 9 8 35 35 H 1.08997 * 109.47404 * 244.97499 * 12 11 10 36 36 H 1.09006 * 109.46574 * 4.97158 * 12 11 10 37 37 H 1.09006 * 109.47268 * 55.00194 * 13 12 11 38 38 H 1.09012 * 109.46414 * 210.00019 * 18 17 4 39 39 H 1.09004 * 109.47285 * 329.99346 * 18 17 4 40 40 H 0.96994 * 119.99949 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1336 0.0000 4 6 3.6194 0.7148 -0.0035 5 7 4.7496 1.5304 -0.0069 6 6 4.6130 2.8712 -0.0190 7 8 3.5038 3.3693 -0.0218 8 6 5.8105 3.7353 -0.0289 9 6 5.8278 5.1503 -0.0476 10 6 7.1365 5.4961 -0.0468 11 7 7.8527 4.3514 -0.0381 12 6 9.3159 4.2784 -0.0401 13 6 9.7864 3.4378 1.1484 14 9 11.1740 3.2728 1.0828 15 9 9.4498 4.0868 2.3411 16 7 7.0666 3.3354 -0.0277 17 7 3.6088 -0.6433 0.0030 18 6 4.7859 -1.5154 0.0073 19 6 5.1895 -1.8077 1.4295 20 1 4.6258 -1.3856 2.2483 21 6 6.2783 -2.6139 1.6853 22 7 6.9650 -3.1275 0.6881 23 14 6.7790 -2.9757 3.4482 24 1 5.8513 -2.2832 4.3782 25 1 6.7194 -4.4398 3.6892 26 1 8.1640 -2.4921 3.6786 27 7 2.2719 -1.0614 0.0050 28 1 -0.3634 0.0045 1.0276 29 1 -0.3633 0.8878 -0.5177 30 1 -0.3634 -0.8922 -0.5100 31 1 1.9876 2.1599 0.0009 32 1 5.6345 1.1331 -0.0047 33 1 4.9762 5.8144 -0.0581 34 1 7.5338 6.5004 -0.0567 35 1 9.6555 3.8181 -0.9679 36 1 9.7299 5.2837 0.0394 37 1 9.3026 2.4615 1.1171 38 1 4.5479 -2.4493 -0.5022 39 1 5.6077 -1.0192 -0.5090 40 1 7.7308 -3.6950 0.8681 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000789904109.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:38 Heat of formation + Delta-G solvation = 2.108629 kcal Electronic energy + Delta-G solvation = -28892.672012 eV Core-core repulsion = 24381.225805 eV Total energy + Delta-G solvation = -4511.446208 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.15369 -48.16962 -43.79340 -42.36093 -40.38590 -36.31317 -35.64830 -35.24203 -33.84649 -31.91800 -30.98869 -30.48795 -29.54747 -27.81633 -26.04957 -24.77500 -23.88052 -22.65920 -22.11795 -21.27242 -20.46626 -19.25398 -18.90263 -18.69561 -18.46055 -18.16863 -17.86139 -17.25956 -16.85448 -16.57653 -16.35420 -15.92176 -15.53202 -15.38072 -15.05880 -14.91247 -14.60410 -14.52480 -14.45489 -14.24391 -14.04903 -13.89902 -13.63112 -13.49366 -13.40506 -13.12400 -12.91394 -12.74237 -12.40840 -12.35350 -11.98612 -11.96194 -11.70855 -11.59754 -11.15950 -10.78864 -10.43968 -10.17908 -9.64725 -9.09678 -8.39143 -6.56233 0.15764 0.94820 1.08085 1.25059 1.31465 1.34515 1.39667 1.47492 1.89165 2.15740 2.29123 2.32944 2.42554 2.90850 3.13886 3.17601 3.37311 3.63272 3.80084 3.82096 3.91298 4.20045 4.26208 4.31897 4.59489 4.64839 4.67855 4.71742 4.80290 4.84684 4.92026 4.96148 5.19080 5.22170 5.26348 5.48622 5.70193 5.74124 5.95554 6.06544 6.19859 6.52457 6.67714 6.88527 6.99494 7.15455 8.67777 Molecular weight = 339.12amu Principal moments of inertia in cm(-1) A = 0.007795 B = 0.004418 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3591.413949 B = 6336.039034 C = 9330.996424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.060 3.940 3 C -0.301 4.301 4 C 0.295 3.705 5 N -0.630 5.630 6 C 0.610 3.390 7 O -0.525 6.525 8 C -0.031 4.031 9 C -0.185 4.185 10 C 0.019 3.981 11 N -0.280 5.280 12 C 0.078 3.922 13 C 0.249 3.751 14 F -0.196 7.196 15 F -0.212 7.212 16 N -0.284 5.284 17 N -0.369 5.369 18 C 0.274 3.726 19 C -0.555 4.555 20 H 0.046 0.954 21 C 0.029 3.971 22 N -0.913 5.913 23 Si 0.967 3.033 24 H -0.278 1.278 25 H -0.271 1.271 26 H -0.265 1.265 27 N -0.327 5.327 28 H 0.085 0.915 29 H 0.098 0.902 30 H 0.075 0.925 31 H 0.172 0.828 32 H 0.421 0.579 33 H 0.178 0.822 34 H 0.240 0.760 35 H 0.150 0.850 36 H 0.173 0.827 37 H 0.115 0.885 38 H 0.030 0.970 39 H 0.043 0.957 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.083 20.795 -3.232 21.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.105 4.105 3 C -0.332 4.332 4 C 0.073 3.927 5 N -0.276 5.276 6 C 0.397 3.603 7 O -0.398 6.398 8 C -0.190 4.190 9 C -0.213 4.213 10 C -0.122 4.122 11 N -0.069 5.069 12 C -0.043 4.043 13 C 0.194 3.806 14 F -0.177 7.177 15 F -0.193 7.193 16 N -0.121 5.121 17 N -0.155 5.155 18 C 0.155 3.845 19 C -0.593 4.593 20 H 0.064 0.936 21 C -0.173 4.173 22 N -0.551 5.551 23 Si 0.791 3.209 24 H -0.202 1.202 25 H -0.197 1.197 26 H -0.190 1.190 27 N -0.152 5.152 28 H 0.104 0.896 29 H 0.116 0.884 30 H 0.094 0.906 31 H 0.189 0.811 32 H 0.258 0.742 33 H 0.196 0.804 34 H 0.256 0.744 35 H 0.167 0.833 36 H 0.190 0.810 37 H 0.133 0.867 38 H 0.048 0.952 39 H 0.061 0.939 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.472 18.761 -3.260 20.112 hybrid contribution 0.591 0.412 0.928 1.175 sum 7.063 19.173 -2.331 20.565 Atomic orbital electron populations 1.20243 0.83617 1.04198 1.03804 1.22903 0.98839 0.89842 0.98933 1.21504 0.88764 1.01041 1.21926 1.18409 0.89251 0.82889 1.02125 1.42712 1.07913 1.05703 1.71315 1.17184 0.87953 0.79747 0.75387 1.90690 1.25714 1.74027 1.49367 1.21443 0.89715 0.94818 1.13000 1.22069 0.98818 0.92104 1.08280 1.23651 0.90286 0.93954 1.04339 1.45451 1.07247 1.03678 1.50550 1.23330 0.73445 1.07417 1.00073 1.22203 0.77483 0.98681 0.82191 1.93022 1.31761 1.96548 1.96382 1.93011 1.92134 1.83823 1.50350 1.73496 1.01433 1.17285 1.19883 1.49311 1.06348 1.02635 1.57217 1.19200 0.78593 0.88920 0.97794 1.21425 1.13828 1.32490 0.91571 0.93613 1.25662 0.95312 0.94302 1.02039 1.69995 1.19526 1.32703 1.32830 0.85380 0.78378 0.78405 0.78779 1.20243 1.19657 1.19017 1.77279 0.86266 1.23671 1.27939 0.89609 0.88376 0.90562 0.81095 0.74190 0.80417 0.74406 0.83255 0.80976 0.86707 0.95204 0.93924 0.91598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.44 71.24 0.74 -0.97 16 2 C 0.06 2.48 7.20 43.07 0.31 2.79 16 3 C -0.30 -12.78 9.58 22.14 0.21 -12.56 16 4 C 0.30 13.44 7.68 131.18 1.01 14.45 16 5 N -0.63 -25.15 5.41 -310.92 -1.68 -26.83 16 6 C 0.61 21.88 7.79 86.74 0.68 22.56 16 7 O -0.52 -20.20 14.05 -4.01 -0.06 -20.26 16 8 C -0.03 -0.87 7.13 42.45 0.30 -0.57 16 9 C -0.19 -3.72 10.81 22.41 0.24 -3.47 16 10 C 0.02 0.24 11.40 83.54 0.95 1.19 16 11 N -0.28 -4.55 3.39 -347.95 -1.18 -5.73 16 12 C 0.08 0.66 6.59 86.38 0.57 1.23 16 13 C 0.25 3.92 5.37 71.98 0.39 4.30 16 14 F -0.20 -3.31 17.34 44.97 0.78 -2.53 16 15 F -0.21 -4.39 17.32 44.97 0.78 -3.61 16 16 N -0.28 -7.27 11.27 -48.19 -0.54 -7.81 16 17 N -0.37 -18.62 3.62 -348.30 -1.26 -19.88 16 18 C 0.27 14.76 6.02 85.63 0.52 15.28 16 19 C -0.55 -31.58 9.39 25.60 0.24 -31.34 16 20 H 0.05 2.73 7.81 -2.91 -0.02 2.71 16 21 C 0.03 1.56 5.46 84.65 0.46 2.03 16 22 N -0.91 -51.09 13.29 21.45 0.28 -50.80 16 23 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 24 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 26 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 27 N -0.33 -15.98 12.56 -47.47 -0.60 -16.58 16 28 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 29 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 30 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.17 6.89 5.83 -2.91 -0.02 6.88 16 32 H 0.42 16.59 7.72 -92.71 -0.72 15.87 16 33 H 0.18 3.07 8.06 -2.91 -0.02 3.05 16 34 H 0.24 0.26 8.06 -2.91 -0.02 0.24 16 35 H 0.15 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.17 -0.01 8.04 -2.38 -0.02 -0.02 16 37 H 0.12 2.16 7.96 -2.38 -0.02 2.14 16 38 H 0.03 1.73 8.14 -2.38 -0.02 1.72 16 39 H 0.04 2.26 7.52 -2.38 -0.02 2.24 16 40 H 0.27 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -77.40 363.98 5.57 -71.83 By element: Atomic # 1 Polarization: 21.40 SS G_CDS: 0.40 Total: 21.79 kcal Atomic # 6 Polarization: 8.29 SS G_CDS: 6.62 Total: 14.91 kcal Atomic # 7 Polarization: -122.65 SS G_CDS: -4.98 Total: -127.63 kcal Atomic # 8 Polarization: -20.20 SS G_CDS: -0.06 Total: -20.26 kcal Atomic # 9 Polarization: -7.70 SS G_CDS: 1.56 Total: -6.14 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Total: -77.40 5.57 -71.83 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000789904109.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.942 kcal (2) G-P(sol) polarization free energy of solvation -77.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds