Wall clock time and date at job start Sat Apr 11 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47220 * 120.00289 * 2 1 3 5 5 C 1.50697 * 109.46975 * 174.39972 * 4 2 1 6 6 C 1.37974 * 120.07650 * 102.49076 * 5 4 2 7 7 C 1.38346 * 120.14888 * 180.02562 * 6 5 4 8 8 C 1.38382 * 120.28584 * 359.97438 * 7 6 5 9 9 C 1.37934 * 120.14888 * 0.02562 * 8 7 6 10 10 C 1.39558 * 120.07307 * 282.21627 * 5 4 2 11 11 C 1.47847 * 120.14423 * 359.97438 * 10 5 4 12 12 O 1.21558 * 119.99798 * 354.05261 * 11 10 5 13 13 N 1.34771 * 120.00187 * 174.04921 * 11 10 5 14 14 S 1.65604 * 120.00088 * 180.02562 * 13 11 10 15 15 O 1.42102 * 104.27935 * 181.07586 * 14 13 11 16 16 O 1.42102 * 104.27804 * 308.93083 * 14 13 11 17 17 C 1.81403 * 104.45059 * 64.99987 * 14 13 11 18 18 C 1.52997 * 109.47164 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.46873 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99652 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46804 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46894 * 120.00099 * 23 21 19 26 26 H 1.48503 * 109.47015 * 239.99929 * 23 21 19 27 27 H 1.09002 * 109.46771 * 299.99528 * 1 2 3 28 28 H 1.08996 * 109.47148 * 59.99494 * 1 2 3 29 29 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46655 * 239.99972 * 2 1 3 31 31 H 1.08998 * 109.47297 * 305.07932 * 3 2 1 32 32 H 1.08997 * 109.47085 * 65.08346 * 3 2 1 33 33 H 1.09000 * 109.46823 * 185.08575 * 3 2 1 34 34 H 1.09000 * 109.46529 * 294.39456 * 4 2 1 35 35 H 1.08995 * 109.47116 * 54.39593 * 4 2 1 36 36 H 1.07997 * 119.92930 * 0.02562 * 6 5 4 37 37 H 1.07996 * 119.85630 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.92504 * 179.97438 * 8 7 6 39 39 H 1.07997 * 120.07286 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99977 * 0.02562 * 13 11 10 41 41 H 1.09007 * 109.46812 * 300.00342 * 17 14 13 42 42 H 1.08998 * 109.46904 * 59.99977 * 17 14 13 43 43 H 1.08999 * 109.47103 * 299.99839 * 18 17 14 44 44 H 1.08998 * 109.47327 * 60.00116 * 18 17 14 45 45 H 0.97004 * 119.99748 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5406 -0.8425 1.1818 6 6 4.3368 0.0038 1.9258 7 6 5.7146 -0.1058 1.8646 8 6 6.3033 -1.0640 1.0583 9 6 5.5189 -1.9162 0.3094 10 6 4.1280 -1.8147 0.3710 11 6 3.2809 -2.7293 -0.4240 12 8 2.0728 -2.7084 -0.2910 13 7 3.8482 -3.5861 -1.2960 14 16 2.8993 -4.6100 -2.1869 15 8 3.8248 -5.3638 -2.9579 16 8 2.0635 -5.2391 -1.2251 17 6 1.9267 -3.5121 -3.2544 18 6 0.9986 -4.3494 -4.1366 19 6 0.1911 -3.4374 -5.0238 20 1 0.3261 -2.3675 -4.9640 21 6 -0.7207 -3.9687 -5.9111 22 7 -0.8854 -5.2715 -5.9834 23 14 -1.7212 -2.8382 -7.0113 24 1 -1.3504 -1.4264 -6.7382 25 1 -1.4413 -3.1576 -8.4343 26 1 -3.1675 -3.0319 -6.7357 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6043 1.9819 -0.8410 32 1 1.7529 1.9294 0.9320 33 1 3.1262 1.4439 -0.0911 34 1 1.7610 -0.1528 2.1363 35 1 1.5971 -1.7159 1.3007 36 1 3.8835 0.7534 2.5574 37 1 6.3333 0.5593 2.4487 38 1 7.3795 -1.1441 1.0146 39 1 5.9797 -2.6633 -0.3198 40 1 4.8122 -3.6030 -1.4019 41 1 1.3314 -2.8392 -2.6372 42 1 2.5986 -2.9289 -3.8840 43 1 1.5936 -5.0226 -4.7537 44 1 0.3267 -4.9324 -3.5067 45 1 -1.5272 -5.6453 -6.6074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000791866749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:43 Heat of formation + Delta-G solvation = -103.651042 kcal Electronic energy + Delta-G solvation = -28087.253135 eV Core-core repulsion = 24196.308823 eV Total energy + Delta-G solvation = -3890.944312 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.91710 -38.71491 -36.69663 -36.39063 -35.61564 -34.46351 -33.89561 -31.72370 -31.37504 -31.17260 -27.13384 -26.76162 -25.63247 -24.44424 -22.37962 -21.64116 -21.41829 -20.02423 -19.28290 -18.39224 -17.56628 -16.54080 -16.29593 -15.83088 -15.69510 -15.55298 -15.03515 -14.99204 -14.73943 -14.53863 -14.11279 -13.96754 -13.71412 -13.43854 -12.81713 -12.72560 -12.53871 -12.38800 -12.17655 -12.13647 -11.80321 -11.75125 -11.68044 -11.60416 -11.55942 -11.09587 -11.01500 -10.95025 -10.88737 -10.81157 -10.48452 -10.39661 -10.34231 -9.91368 -9.69795 -9.33708 -9.16775 -8.99525 -8.49767 -6.11817 -4.16988 0.44764 0.52427 1.02882 2.38838 2.71929 3.26544 3.33747 3.37441 3.48118 3.98112 4.16656 4.37644 4.41649 4.48414 4.62745 4.63870 4.83736 4.92127 5.01912 5.04286 5.09894 5.20641 5.23739 5.39911 5.56327 5.59121 5.62858 5.67528 5.72362 5.76518 5.88193 5.92289 5.99810 6.01658 6.08737 6.14533 6.33182 6.42319 6.46544 6.49497 6.53878 6.69206 7.28902 7.35305 7.49116 7.81599 8.17177 8.86192 9.47569 10.99349 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.003738 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.479267 B = 7488.786955 C = 8986.885406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 C -0.149 4.149 4 C -0.093 4.093 5 C -0.006 4.006 6 C -0.129 4.129 7 C -0.086 4.086 8 C -0.136 4.136 9 C -0.078 4.078 10 C -0.144 4.144 11 C 0.578 3.422 12 O -0.476 6.476 13 N -1.057 6.057 14 S 2.565 3.435 15 O -0.955 6.955 16 O -0.936 6.936 17 C -0.574 4.574 18 C 0.030 3.970 19 C -0.517 4.517 20 H 0.063 0.937 21 C 0.058 3.942 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.049 0.951 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.053 0.947 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.425 0.575 41 H 0.132 0.868 42 H 0.121 0.879 43 H 0.034 0.966 44 H 0.036 0.964 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.118 13.012 16.202 25.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.102 4.102 3 C -0.206 4.206 4 C -0.129 4.129 5 C -0.008 4.008 6 C -0.147 4.147 7 C -0.105 4.105 8 C -0.154 4.154 9 C -0.096 4.096 10 C -0.149 4.149 11 C 0.366 3.634 12 O -0.349 6.349 13 N -0.818 5.818 14 S 2.665 3.335 15 O -0.945 6.945 16 O -0.926 6.926 17 C -0.709 4.709 18 C -0.009 4.009 19 C -0.557 4.557 20 H 0.081 0.919 21 C -0.145 4.145 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.146 0.854 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.139 0.861 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.165 11.924 16.343 24.137 hybrid contribution 0.085 1.100 -0.900 1.424 sum 13.250 13.023 15.442 24.159 Atomic orbital electron populations 1.21795 0.94606 1.02659 1.01171 1.20981 0.96232 0.95073 0.97864 1.21932 1.00746 0.96472 1.01489 1.21074 0.89619 1.03930 0.98323 1.20106 0.96923 0.91647 0.92074 1.21096 0.93469 0.99726 1.00403 1.21395 0.94932 0.97092 0.97043 1.21072 1.00144 0.96384 0.97810 1.21330 0.92300 0.98229 0.97772 1.19690 0.93521 0.99389 1.02273 1.18218 0.87910 0.78946 0.78336 1.90935 1.13423 1.67047 1.63499 1.55412 1.23106 1.51889 1.51416 1.06743 0.75141 0.75967 0.75619 1.93590 1.62187 1.67435 1.71317 1.93599 1.67833 1.72348 1.58846 1.30336 1.12870 1.14657 1.13024 1.18993 0.93333 0.94787 0.93836 1.21004 1.21454 0.93039 1.20160 0.91912 1.25060 0.96954 0.95238 0.97209 1.69965 1.35396 1.10595 1.36874 0.86406 0.79915 0.80740 0.80195 1.19614 1.20812 1.20764 0.93236 0.92675 0.91674 0.90826 0.92756 0.92955 0.93016 0.91478 0.87411 0.85257 0.85521 0.85285 0.85364 0.73896 0.84951 0.86066 0.94807 0.94559 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.19 37.16 0.34 -1.42 16 2 C -0.08 -0.98 2.33 -90.62 -0.21 -1.19 16 3 C -0.15 -1.46 8.84 37.16 0.33 -1.13 16 4 C -0.09 -1.04 4.10 -27.88 -0.11 -1.15 16 5 C -0.01 -0.07 4.42 -104.23 -0.46 -0.53 16 6 C -0.13 -1.05 9.13 -39.64 -0.36 -1.41 16 7 C -0.09 -0.60 10.04 -39.49 -0.40 -0.99 16 8 C -0.14 -0.96 10.03 -39.64 -0.40 -1.36 16 9 C -0.08 -0.67 9.53 -39.19 -0.37 -1.04 16 10 C -0.14 -1.62 5.83 -104.97 -0.61 -2.23 16 11 C 0.58 8.09 6.99 -12.33 -0.09 8.00 16 12 O -0.48 -7.94 10.03 -11.82 -0.12 -8.06 16 13 N -1.06 -14.07 5.55 30.53 0.17 -13.90 16 14 S 2.57 47.04 5.11 -107.50 -0.55 46.49 16 15 O -0.95 -19.07 18.08 -57.54 -1.04 -20.11 16 16 O -0.94 -20.48 17.04 -64.79 -1.10 -21.58 16 17 C -0.57 -11.38 5.82 37.16 0.22 -11.16 16 18 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 19 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 20 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 21 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 22 N -0.89 -26.54 13.29 55.43 0.74 -25.80 16 23 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 16 24 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 1.01 6.54 -51.93 -0.34 0.67 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.49 7.21 -51.93 -0.37 0.12 16 34 H 0.07 0.62 7.98 -51.93 -0.41 0.21 16 35 H 0.11 1.45 5.92 -51.93 -0.31 1.14 16 36 H 0.13 0.81 8.02 -52.49 -0.42 0.39 16 37 H 0.13 0.56 8.06 -52.49 -0.42 0.13 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.13 0.80 6.45 -52.49 -0.34 0.47 16 40 H 0.43 3.99 6.86 -34.47 -0.24 3.75 16 41 H 0.13 2.55 7.19 -51.92 -0.37 2.17 16 42 H 0.12 2.08 8.14 -51.93 -0.42 1.66 16 43 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 45 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 379.21 15.07 5.71 5.71 Total: -1.00 -35.69 379.21 -10.46 -46.15 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.57 Total: 2.90 kcal Atomic # 6 Polarization: -25.45 SS G_CDS: -2.68 Total: -28.13 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.91 Total: -39.70 kcal Atomic # 8 Polarization: -47.48 SS G_CDS: -2.26 Total: -49.75 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 47.04 SS G_CDS: -0.55 Total: 46.49 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.69 -10.46 -46.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791866749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.500 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds