Wall clock time and date at job start Sat Apr 11 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47220 * 120.00289 * 2 1 3 5 5 C 1.50697 * 109.46975 * 174.39972 * 4 2 1 6 6 C 1.37974 * 120.07650 * 102.49076 * 5 4 2 7 7 C 1.38346 * 120.14888 * 180.02562 * 6 5 4 8 8 C 1.38382 * 120.28584 * 359.97438 * 7 6 5 9 9 C 1.37934 * 120.14888 * 0.02562 * 8 7 6 10 10 C 1.39558 * 120.07307 * 282.21627 * 5 4 2 11 11 C 1.47847 * 120.14423 * 359.97438 * 10 5 4 12 12 O 1.21558 * 119.99798 * 354.05261 * 11 10 5 13 13 N 1.34771 * 120.00187 * 174.04921 * 11 10 5 14 14 S 1.65604 * 120.00088 * 180.02562 * 13 11 10 15 15 O 1.42102 * 104.27935 * 181.07586 * 14 13 11 16 16 O 1.42102 * 104.27804 * 308.93083 * 14 13 11 17 17 C 1.81403 * 104.45059 * 64.99987 * 14 13 11 18 18 C 1.52997 * 109.47164 * 180.02562 * 17 14 13 19 19 C 1.50700 * 109.46873 * 180.02562 * 18 17 14 20 20 H 1.07999 * 120.00071 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99922 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99652 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00027 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46804 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46894 * 120.00099 * 23 21 19 26 26 H 1.48503 * 109.47015 * 239.99929 * 23 21 19 27 27 H 1.09002 * 109.46771 * 299.99528 * 1 2 3 28 28 H 1.08996 * 109.47148 * 59.99494 * 1 2 3 29 29 H 1.09002 * 109.46864 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46655 * 239.99972 * 2 1 3 31 31 H 1.08998 * 109.47297 * 305.07932 * 3 2 1 32 32 H 1.08997 * 109.47085 * 65.08346 * 3 2 1 33 33 H 1.09000 * 109.46823 * 185.08575 * 3 2 1 34 34 H 1.09000 * 109.46529 * 294.39456 * 4 2 1 35 35 H 1.08995 * 109.47116 * 54.39593 * 4 2 1 36 36 H 1.07997 * 119.92930 * 0.02562 * 6 5 4 37 37 H 1.07996 * 119.85630 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.92504 * 179.97438 * 8 7 6 39 39 H 1.07997 * 120.07286 * 179.97438 * 9 8 7 40 40 H 0.96998 * 119.99977 * 0.02562 * 13 11 10 41 41 H 1.09007 * 109.46812 * 300.00342 * 17 14 13 42 42 H 1.08998 * 109.46904 * 59.99977 * 17 14 13 43 43 H 1.08999 * 109.47103 * 299.99839 * 18 17 14 44 44 H 1.08998 * 109.47327 * 60.00116 * 18 17 14 45 45 H 0.97004 * 119.99748 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5406 -0.8425 1.1818 6 6 4.3368 0.0038 1.9258 7 6 5.7146 -0.1058 1.8646 8 6 6.3033 -1.0640 1.0583 9 6 5.5189 -1.9162 0.3094 10 6 4.1280 -1.8147 0.3710 11 6 3.2809 -2.7293 -0.4240 12 8 2.0728 -2.7084 -0.2910 13 7 3.8482 -3.5861 -1.2960 14 16 2.8993 -4.6100 -2.1869 15 8 3.8248 -5.3638 -2.9579 16 8 2.0635 -5.2391 -1.2251 17 6 1.9267 -3.5121 -3.2544 18 6 0.9986 -4.3494 -4.1366 19 6 0.1911 -3.4374 -5.0238 20 1 0.3261 -2.3675 -4.9640 21 6 -0.7207 -3.9687 -5.9111 22 7 -0.8854 -5.2715 -5.9834 23 14 -1.7212 -2.8382 -7.0113 24 1 -1.3504 -1.4264 -6.7382 25 1 -1.4413 -3.1576 -8.4343 26 1 -3.1675 -3.0319 -6.7357 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.6043 1.9819 -0.8410 32 1 1.7529 1.9294 0.9320 33 1 3.1262 1.4439 -0.0911 34 1 1.7610 -0.1528 2.1363 35 1 1.5971 -1.7159 1.3007 36 1 3.8835 0.7534 2.5574 37 1 6.3333 0.5593 2.4487 38 1 7.3795 -1.1441 1.0146 39 1 5.9797 -2.6633 -0.3198 40 1 4.8122 -3.6030 -1.4019 41 1 1.3314 -2.8392 -2.6372 42 1 2.5986 -2.9289 -3.8840 43 1 1.5936 -5.0226 -4.7537 44 1 0.3267 -4.9324 -3.5067 45 1 -1.5272 -5.6453 -6.6074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000791866749.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:42 Heat of formation + Delta-G solvation = -127.547333 kcal Electronic energy + Delta-G solvation = -28088.289356 eV Core-core repulsion = 24196.308823 eV Total energy + Delta-G solvation = -3891.980533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.86585 -39.58429 -38.31120 -37.31190 -37.20178 -35.97283 -35.59629 -33.20455 -32.43464 -32.06359 -27.96627 -27.69458 -27.56421 -25.31099 -23.72995 -23.00700 -22.33530 -20.98728 -20.58869 -19.50416 -19.08683 -18.35945 -17.37884 -17.14868 -16.63560 -16.59891 -16.46515 -16.30968 -16.21869 -15.50322 -15.24592 -14.99748 -14.77201 -14.51485 -14.50352 -13.84847 -13.76529 -13.47976 -13.41297 -13.39349 -13.30154 -13.03340 -12.98552 -12.86421 -12.80932 -12.64630 -12.35994 -12.28014 -12.20174 -12.05196 -11.82233 -11.74564 -11.64153 -11.41518 -11.10461 -10.90689 -10.67444 -9.98227 -9.66139 -8.28499 -6.42313 -1.05002 -0.27863 0.42182 1.31554 1.39009 1.40206 1.49086 1.53563 2.35518 2.51799 2.81183 2.99007 3.05122 3.23805 3.74576 3.76903 3.83770 3.98738 4.00687 4.04664 4.15723 4.22302 4.34126 4.45736 4.49639 4.65861 4.74743 4.80408 4.84111 4.87676 4.98903 5.05105 5.09116 5.16583 5.20065 5.21442 5.29849 5.40875 5.43948 5.49255 5.52187 5.58746 5.65341 5.75192 5.97396 6.02314 6.44303 6.69991 7.27509 8.84203 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012478 B = 0.003738 C = 0.003115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2243.479267 B = 7488.786955 C = 8986.885406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.141 4.141 4 C -0.089 4.089 5 C -0.022 4.022 6 C -0.130 4.130 7 C -0.076 4.076 8 C -0.133 4.133 9 C -0.082 4.082 10 C -0.167 4.167 11 C 0.572 3.428 12 O -0.509 6.509 13 N -1.038 6.038 14 S 2.600 3.400 15 O -0.970 6.970 16 O -0.975 6.975 17 C -0.576 4.576 18 C 0.024 3.976 19 C -0.538 4.538 20 H 0.073 0.927 21 C -0.002 4.002 22 N -0.932 5.932 23 Si 0.974 3.026 24 H -0.258 1.258 25 H -0.274 1.274 26 H -0.278 1.278 27 H 0.069 0.931 28 H 0.050 0.950 29 H 0.037 0.963 30 H 0.047 0.953 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.150 0.850 37 H 0.160 0.840 38 H 0.160 0.840 39 H 0.148 0.852 40 H 0.444 0.556 41 H 0.135 0.865 42 H 0.149 0.851 43 H 0.015 0.985 44 H 0.005 0.995 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.565 16.145 17.334 28.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.103 4.103 3 C -0.198 4.198 4 C -0.126 4.126 5 C -0.023 4.023 6 C -0.148 4.148 7 C -0.094 4.094 8 C -0.151 4.151 9 C -0.100 4.100 10 C -0.172 4.172 11 C 0.362 3.638 12 O -0.384 6.384 13 N -0.805 5.805 14 S 2.699 3.301 15 O -0.961 6.961 16 O -0.965 6.965 17 C -0.709 4.709 18 C -0.015 4.015 19 C -0.577 4.577 20 H 0.091 0.909 21 C -0.200 4.200 22 N -0.572 5.572 23 Si 0.798 3.202 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.204 1.204 27 H 0.088 0.912 28 H 0.069 0.931 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.105 0.895 35 H 0.095 0.905 36 H 0.168 0.832 37 H 0.178 0.822 38 H 0.178 0.822 39 H 0.165 0.835 40 H 0.285 0.715 41 H 0.153 0.847 42 H 0.167 0.833 43 H 0.033 0.967 44 H 0.024 0.976 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 15.639 15.061 17.462 27.863 hybrid contribution -0.563 0.156 -1.134 1.276 sum 15.077 15.217 16.328 26.934 Atomic orbital electron populations 1.21788 0.95383 1.01077 1.01940 1.20957 0.95633 0.96475 0.97249 1.21849 1.00929 0.94697 1.02301 1.20953 0.90626 1.02379 0.98666 1.20142 0.96496 0.92575 0.93063 1.21340 0.94082 0.99452 0.99923 1.21841 0.94639 0.96744 0.96147 1.21484 1.01591 0.95367 0.96616 1.21626 0.91152 0.99020 0.98213 1.19582 0.94345 0.99885 1.03370 1.18869 0.87974 0.78842 0.78067 1.90940 1.15116 1.67891 1.64459 1.54851 1.23843 1.51212 1.50585 1.05392 0.74499 0.75394 0.74845 1.93560 1.62260 1.68222 1.72016 1.93548 1.69428 1.73625 1.59910 1.30220 1.12909 1.14547 1.13213 1.18825 0.93704 0.94981 0.93988 1.21464 1.21875 0.93819 1.20514 0.90915 1.26098 0.98221 0.96855 0.98874 1.70101 1.36371 1.12731 1.37948 0.85259 0.77930 0.79010 0.78025 1.18134 1.19935 1.20361 0.91234 0.93066 0.94409 0.93459 0.93090 0.91161 0.92467 0.89521 0.90536 0.83230 0.82239 0.82246 0.83480 0.71507 0.84721 0.83283 0.96660 0.97636 0.92289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.63 9.19 71.98 0.66 -2.97 16 2 C -0.08 -2.01 2.33 -10.79 -0.03 -2.04 16 3 C -0.14 -2.51 8.84 71.98 0.64 -1.87 16 4 C -0.09 -1.99 4.10 29.85 0.12 -1.87 16 5 C -0.02 -0.42 4.42 -19.61 -0.09 -0.51 16 6 C -0.13 -1.67 9.13 22.23 0.20 -1.47 16 7 C -0.08 -0.69 10.04 22.33 0.22 -0.46 16 8 C -0.13 -1.30 10.03 22.23 0.22 -1.07 16 9 C -0.08 -1.17 9.53 22.53 0.21 -0.96 16 10 C -0.17 -3.56 5.83 -20.09 -0.12 -3.68 16 11 C 0.57 16.24 6.99 86.79 0.61 16.85 16 12 O -0.51 -17.96 10.03 12.48 0.13 -17.84 16 13 N -1.04 -27.52 5.55 -175.60 -0.98 -28.49 16 14 S 2.60 98.37 5.11 -56.49 -0.29 98.08 16 15 O -0.97 -39.24 18.08 -127.65 -2.31 -41.55 16 16 O -0.98 -44.79 17.04 -120.72 -2.06 -46.85 16 17 C -0.58 -23.67 5.82 71.98 0.42 -23.25 16 18 C 0.02 1.31 4.98 29.85 0.15 1.45 16 19 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 20 H 0.07 3.89 7.74 -2.91 -0.02 3.87 16 21 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 22 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 23 Si 0.97 44.20 29.54 68.60 2.03 46.22 16 24 H -0.26 -10.99 7.11 99.48 0.71 -10.29 16 25 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 26 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 27 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.05 1.36 6.54 -2.39 -0.02 1.34 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.06 0.96 7.21 -2.39 -0.02 0.94 16 34 H 0.09 1.50 7.98 -2.39 -0.02 1.48 16 35 H 0.08 2.19 5.92 -2.39 -0.01 2.18 16 36 H 0.15 1.27 8.02 -2.91 -0.02 1.24 16 37 H 0.16 0.44 8.06 -2.91 -0.02 0.42 16 38 H 0.16 0.61 8.06 -2.91 -0.02 0.59 16 39 H 0.15 1.40 6.45 -2.91 -0.02 1.38 16 40 H 0.44 7.78 6.86 -96.75 -0.66 7.12 16 41 H 0.13 5.47 7.19 -2.39 -0.02 5.45 16 42 H 0.15 5.16 8.14 -2.39 -0.02 5.14 16 43 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 44 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 Total: -1.00 -81.31 379.21 1.07 -80.24 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.34 Total: 19.29 kcal Atomic # 6 Polarization: -55.90 SS G_CDS: 3.93 Total: -51.98 kcal Atomic # 7 Polarization: -84.94 SS G_CDS: -0.69 Total: -85.63 kcal Atomic # 8 Polarization: -102.00 SS G_CDS: -4.24 Total: -106.24 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 98.37 SS G_CDS: -0.29 Total: 98.08 kcal Total: -81.31 1.07 -80.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000791866749.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.305 kcal (2) G-P(sol) polarization free energy of solvation -81.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.243 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds