Wall clock time and date at job start Sat Apr 11 2020 05:37:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20194 * 2 1 4 4 C 1.38423 * 114.92357 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.91808 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.19874 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46898 * 90.00100 * 6 5 4 8 8 C 1.50696 * 109.46950 * 179.97438 * 7 6 5 9 9 O 1.20825 * 120.00041 * 0.02562 * 8 7 6 10 10 O 1.34232 * 119.99939 * 179.97438 * 8 7 6 11 11 C 1.45194 * 117.00218 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46961 * 30.00323 * 11 10 8 13 13 C 1.52999 * 109.47533 * 270.00617 * 11 10 8 14 14 C 1.50700 * 109.47199 * 150.00221 * 11 10 8 15 15 O 1.21277 * 119.99705 * 16.03014 * 14 11 10 16 16 N 1.34776 * 119.99737 * 196.02759 * 14 11 10 17 17 C 1.46494 * 120.00482 * 5.36889 * 16 14 11 18 18 C 1.46507 * 119.99723 * 185.36535 * 16 14 11 19 19 C 1.50700 * 109.47034 * 90.00098 * 18 16 14 20 20 H 1.08001 * 119.99968 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99812 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00202 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47270 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47072 * 120.00174 * 23 21 19 26 26 H 1.48504 * 109.47522 * 240.00086 * 23 21 19 27 27 S 1.75876 * 109.59288 * 0.24295 * 5 4 3 28 28 H 1.09000 * 109.47366 * 89.99692 * 1 2 3 29 29 H 1.09007 * 109.46713 * 209.99727 * 1 2 3 30 30 H 1.08996 * 109.47266 * 329.99265 * 1 2 3 31 31 H 1.08007 * 122.53991 * 0.02562 * 3 2 1 32 32 H 1.08001 * 122.53525 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47516 * 330.00402 * 6 5 4 34 34 H 1.08996 * 109.46799 * 210.00078 * 6 5 4 35 35 H 1.08997 * 109.46928 * 300.00245 * 7 6 5 36 36 H 1.09008 * 109.46511 * 59.99920 * 7 6 5 37 37 H 1.09000 * 109.47184 * 66.13426 * 13 11 10 38 38 H 1.08999 * 109.47447 * 186.13458 * 13 11 10 39 39 H 1.09005 * 109.46851 * 306.13574 * 13 11 10 40 40 H 1.09000 * 109.47319 * 84.82190 * 17 16 14 41 41 H 1.09000 * 109.47497 * 204.81815 * 17 16 14 42 42 H 1.09004 * 109.46858 * 324.82219 * 17 16 14 43 43 H 1.08999 * 109.46909 * 210.00375 * 18 16 14 44 44 H 1.09003 * 109.46882 * 330.00466 * 18 16 14 45 45 H 0.97001 * 120.00444 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3861 -0.9769 -0.0029 7 6 5.8646 -1.1568 1.4392 8 6 7.2754 -1.6866 1.4379 9 8 7.8403 -1.8981 0.3910 10 8 7.9048 -1.9226 2.5998 11 6 9.2623 -2.4318 2.5227 12 1 9.7381 -2.0615 1.6146 13 6 9.2326 -3.9613 2.4955 14 6 10.0427 -1.9658 3.7247 15 8 9.4595 -1.5303 4.6947 16 7 11.3888 -2.0331 3.7216 17 6 12.0988 -2.4477 2.5091 18 6 12.1420 -1.6915 4.9308 19 6 12.3336 -2.9287 5.7696 20 1 11.9346 -3.8750 5.4352 21 6 13.0191 -2.8529 6.9634 22 7 13.5054 -1.7007 7.3704 23 14 13.2560 -4.3863 8.0035 24 1 12.6179 -5.5454 7.3291 25 1 14.7075 -4.6503 8.1728 26 1 12.6313 -4.1826 9.3353 27 16 2.5210 -1.4370 -0.0089 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.8668 2.0895 0.0004 32 1 4.3719 1.6352 -0.0002 33 1 6.0385 -0.2709 -0.5167 34 1 5.4133 -1.9374 -0.5173 35 1 5.8373 -0.1962 1.9536 36 1 5.2121 -1.8629 1.9530 37 1 8.7636 -4.2992 1.5714 38 1 10.2513 -4.3455 2.5475 39 1 8.6617 -4.3288 3.3482 40 1 12.2419 -1.5847 1.8588 41 1 13.0693 -2.8631 2.7804 42 1 11.5133 -3.2038 1.9859 43 1 13.1151 -1.2880 4.6509 44 1 11.5907 -0.9459 5.5038 45 1 13.9874 -1.6473 8.2105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000811254932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:59 Heat of formation + Delta-G solvation = -97.538765 kcal Electronic energy + Delta-G solvation = -26170.442284 eV Core-core repulsion = 22279.763020 eV Total energy + Delta-G solvation = -3890.679264 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.74657 -39.02500 -38.41335 -36.55517 -34.90068 -34.49834 -32.84968 -31.82860 -31.21934 -27.84504 -27.57518 -26.07683 -24.79617 -24.05845 -23.02191 -22.28295 -20.60336 -19.16763 -18.82503 -18.01320 -17.09322 -16.73601 -16.55848 -16.31682 -15.90692 -15.40662 -15.07952 -14.78626 -14.47563 -14.31050 -14.17588 -13.58214 -13.53711 -13.27613 -13.09124 -12.88192 -12.73956 -12.49882 -12.33482 -12.13672 -12.09058 -11.99533 -11.92655 -11.73807 -11.42717 -11.36732 -11.25524 -10.98264 -10.91890 -10.72742 -10.62096 -10.54413 -10.19606 -9.65911 -8.93063 -8.78632 -8.76621 -8.47522 -7.73518 -6.08168 -4.13518 0.63109 1.26467 1.66861 2.12392 2.33937 2.55871 3.22483 3.27665 3.35649 3.39661 3.86541 4.36848 4.41545 4.50033 4.56888 4.69475 4.79531 4.86182 4.91425 5.03531 5.09485 5.09962 5.13231 5.26170 5.26574 5.29194 5.47525 5.51816 5.52060 5.67216 5.69590 5.72820 5.85175 5.87031 5.95980 6.07249 6.21002 6.23024 6.42959 6.97338 7.38346 7.45279 7.68605 7.87977 8.17592 8.27811 8.82175 8.97281 9.51745 10.99943 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.001862 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.897322 B =15034.310863 C =15299.378821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.182 4.182 3 C -0.140 4.140 4 C -0.130 4.130 5 C -0.178 4.178 6 C -0.036 4.036 7 C -0.109 4.109 8 C 0.462 3.538 9 O -0.513 6.513 10 O -0.325 6.325 11 C 0.070 3.930 12 H 0.103 0.897 13 C -0.164 4.164 14 C 0.509 3.491 15 O -0.520 6.520 16 N -0.596 5.596 17 C 0.074 3.926 18 C 0.245 3.755 19 C -0.529 4.529 20 H 0.059 0.941 21 C 0.061 3.939 22 N -0.893 5.893 23 Si 0.899 3.101 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 S 0.099 5.901 28 H 0.074 0.926 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.138 0.862 32 H 0.141 0.859 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.112 0.888 36 H 0.108 0.892 37 H 0.068 0.932 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.047 0.953 41 H 0.081 0.919 42 H 0.059 0.941 43 H 0.036 0.964 44 H 0.046 0.954 45 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.298 1.971 -18.708 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.299 4.299 3 C -0.170 4.170 4 C -0.160 4.160 5 C -0.295 4.295 6 C -0.075 4.075 7 C -0.148 4.148 8 C 0.305 3.695 9 O -0.402 6.402 10 O -0.241 6.241 11 C 0.012 3.988 12 H 0.120 0.880 13 C -0.222 4.222 14 C 0.294 3.706 15 O -0.396 6.396 16 N -0.330 5.330 17 C -0.070 4.070 18 C 0.126 3.874 19 C -0.568 4.568 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.727 3.273 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 S 0.363 5.637 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.156 0.844 32 H 0.159 0.841 33 H 0.112 0.888 34 H 0.103 0.897 35 H 0.130 0.870 36 H 0.127 0.873 37 H 0.087 0.913 38 H 0.105 0.895 39 H 0.094 0.906 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.054 0.946 44 H 0.064 0.936 45 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -21.573 0.669 -18.325 28.314 hybrid contribution 0.695 0.651 0.539 1.094 sum -20.878 1.320 -17.786 27.459 Atomic orbital electron populations 1.20341 0.87858 1.03231 1.02718 1.24511 0.99988 0.95783 1.09616 1.20078 0.92894 0.99263 1.04724 1.20137 0.96344 0.95955 1.03604 1.24340 0.98242 0.96527 1.10370 1.19918 0.89369 1.02997 0.95232 1.21401 0.89764 1.04460 0.99125 1.23712 0.89426 0.74397 0.81986 1.90644 1.67445 1.49183 1.32899 1.86639 1.28350 1.75372 1.33689 1.22675 0.80417 0.95862 0.99885 0.87970 1.22158 1.04454 0.92138 1.03428 1.19771 0.82983 0.80077 0.87789 1.90695 1.68768 1.44961 1.35184 1.48078 1.04646 1.65812 1.14463 1.21831 0.98837 0.99085 0.87268 1.19378 0.90756 0.97012 0.80224 1.21465 1.35274 0.94934 1.05135 0.92289 1.24944 0.95434 0.96389 0.97345 1.69941 1.36941 1.24129 1.22180 0.86426 0.77668 0.82909 0.80313 1.19777 1.20935 1.20825 1.84314 0.96489 1.09415 1.73471 0.90773 0.91280 0.90492 0.84384 0.84134 0.88803 0.89686 0.86999 0.87340 0.91291 0.89479 0.90639 0.93434 0.90066 0.92258 0.94615 0.93556 0.92691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.43 10.38 36.00 0.37 -0.06 16 2 C -0.18 -1.40 6.51 -36.00 -0.23 -1.63 16 3 C -0.14 -1.08 10.05 -41.21 -0.41 -1.50 16 4 C -0.13 -1.07 10.05 -41.21 -0.41 -1.49 16 5 C -0.18 -1.54 5.76 -36.00 -0.21 -1.75 16 6 C -0.04 -0.32 5.00 -27.88 -0.14 -0.45 16 7 C -0.11 -1.06 5.79 -27.88 -0.16 -1.22 16 8 C 0.46 6.23 7.93 36.00 0.29 6.52 16 9 O -0.51 -7.61 15.20 -18.75 -0.28 -7.90 16 10 O -0.33 -5.38 9.47 -45.75 -0.43 -5.81 16 11 C 0.07 1.17 2.14 -27.88 -0.06 1.11 16 12 H 0.10 1.57 6.31 -51.93 -0.33 1.24 16 13 C -0.16 -2.36 9.19 37.16 0.34 -2.01 16 14 C 0.51 10.98 6.95 -10.99 -0.08 10.91 16 15 O -0.52 -13.54 16.13 -13.54 -0.22 -13.76 16 16 N -0.60 -12.71 2.86 -182.95 -0.52 -13.24 16 17 C 0.07 1.16 9.79 59.84 0.59 1.75 16 18 C 0.24 6.39 5.18 -5.19 -0.03 6.36 16 19 C -0.53 -14.84 9.39 -34.44 -0.32 -15.17 16 20 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 21 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 22 N -0.89 -26.37 13.29 55.43 0.74 -25.63 16 23 Si 0.90 21.67 29.54 -169.99 -5.02 16.65 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 27 S 0.10 0.82 23.31 -107.50 -2.51 -1.69 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.10 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.14 0.82 8.06 -52.48 -0.42 0.40 16 32 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 33 H 0.09 0.82 8.10 -51.93 -0.42 0.40 16 34 H 0.08 0.76 8.10 -51.93 -0.42 0.34 16 35 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.11 0.93 8.14 -51.92 -0.42 0.51 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.09 1.19 6.33 -51.93 -0.33 0.86 16 39 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.28 8.03 -51.93 -0.42 0.87 16 42 H 0.06 0.78 4.92 -51.93 -0.26 0.53 16 43 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 44 H 0.05 1.36 7.36 -51.93 -0.38 0.98 16 45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 LS Contribution 395.27 15.07 5.96 5.96 Total: -1.00 -34.50 395.27 -9.60 -44.10 By element: Atomic # 1 Polarization: 5.05 SS G_CDS: -6.74 Total: -1.69 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -0.57 Total: 3.01 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.21 Total: -38.87 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.94 Total: -27.46 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.50 -9.60 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811254932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.436 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds