Wall clock time and date at job start Sat Apr 11 2020 05:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33390 * 125.20194 * 2 1 4 4 C 1.38423 * 114.92357 * 180.02562 * 3 2 1 5 5 C 1.33392 * 114.91808 * 0.02562 * 4 3 2 6 6 C 1.50702 * 125.19874 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46898 * 90.00100 * 6 5 4 8 8 C 1.50696 * 109.46950 * 179.97438 * 7 6 5 9 9 O 1.20825 * 120.00041 * 0.02562 * 8 7 6 10 10 O 1.34232 * 119.99939 * 179.97438 * 8 7 6 11 11 C 1.45194 * 117.00218 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.46961 * 30.00323 * 11 10 8 13 13 C 1.52999 * 109.47533 * 270.00617 * 11 10 8 14 14 C 1.50700 * 109.47199 * 150.00221 * 11 10 8 15 15 O 1.21277 * 119.99705 * 16.03014 * 14 11 10 16 16 N 1.34776 * 119.99737 * 196.02759 * 14 11 10 17 17 C 1.46494 * 120.00482 * 5.36889 * 16 14 11 18 18 C 1.46507 * 119.99723 * 185.36535 * 16 14 11 19 19 C 1.50700 * 109.47034 * 90.00098 * 18 16 14 20 20 H 1.08001 * 119.99968 * 0.02562 * 19 18 16 21 21 C 1.37873 * 119.99812 * 179.97438 * 19 18 16 22 22 N 1.31515 * 120.00202 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.47270 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47072 * 120.00174 * 23 21 19 26 26 H 1.48504 * 109.47522 * 240.00086 * 23 21 19 27 27 S 1.75876 * 109.59288 * 0.24295 * 5 4 3 28 28 H 1.09000 * 109.47366 * 89.99692 * 1 2 3 29 29 H 1.09007 * 109.46713 * 209.99727 * 1 2 3 30 30 H 1.08996 * 109.47266 * 329.99265 * 1 2 3 31 31 H 1.08007 * 122.53991 * 0.02562 * 3 2 1 32 32 H 1.08001 * 122.53525 * 180.02562 * 4 3 2 33 33 H 1.08995 * 109.47516 * 330.00402 * 6 5 4 34 34 H 1.08996 * 109.46799 * 210.00078 * 6 5 4 35 35 H 1.08997 * 109.46928 * 300.00245 * 7 6 5 36 36 H 1.09008 * 109.46511 * 59.99920 * 7 6 5 37 37 H 1.09000 * 109.47184 * 66.13426 * 13 11 10 38 38 H 1.08999 * 109.47447 * 186.13458 * 13 11 10 39 39 H 1.09005 * 109.46851 * 306.13574 * 13 11 10 40 40 H 1.09000 * 109.47319 * 84.82190 * 17 16 14 41 41 H 1.09000 * 109.47497 * 204.81815 * 17 16 14 42 42 H 1.09004 * 109.46858 * 324.82219 * 17 16 14 43 43 H 1.08999 * 109.46909 * 210.00375 * 18 16 14 44 44 H 1.09003 * 109.46882 * 330.00466 * 18 16 14 45 45 H 0.97001 * 120.00444 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2759 1.0900 0.0000 4 6 3.6379 0.8430 -0.0006 5 6 3.9751 -0.4476 -0.0016 6 6 5.3861 -0.9769 -0.0029 7 6 5.8646 -1.1568 1.4392 8 6 7.2754 -1.6866 1.4379 9 8 7.8403 -1.8981 0.3910 10 8 7.9048 -1.9226 2.5998 11 6 9.2623 -2.4318 2.5227 12 1 9.7381 -2.0615 1.6146 13 6 9.2326 -3.9613 2.4955 14 6 10.0427 -1.9658 3.7247 15 8 9.4595 -1.5303 4.6947 16 7 11.3888 -2.0331 3.7216 17 6 12.0988 -2.4477 2.5091 18 6 12.1420 -1.6915 4.9308 19 6 12.3336 -2.9287 5.7696 20 1 11.9346 -3.8750 5.4352 21 6 13.0191 -2.8529 6.9634 22 7 13.5054 -1.7007 7.3704 23 14 13.2560 -4.3863 8.0035 24 1 12.6179 -5.5454 7.3291 25 1 14.7075 -4.6503 8.1728 26 1 12.6313 -4.1826 9.3353 27 16 2.5210 -1.4370 -0.0089 28 1 -0.3634 0.0001 -1.0276 29 1 -0.3633 -0.8901 0.5138 30 1 -0.3633 0.8899 0.5139 31 1 1.8668 2.0895 0.0004 32 1 4.3719 1.6352 -0.0002 33 1 6.0385 -0.2709 -0.5167 34 1 5.4133 -1.9374 -0.5173 35 1 5.8373 -0.1962 1.9536 36 1 5.2121 -1.8629 1.9530 37 1 8.7636 -4.2992 1.5714 38 1 10.2513 -4.3455 2.5475 39 1 8.6617 -4.3288 3.3482 40 1 12.2419 -1.5847 1.8588 41 1 13.0693 -2.8631 2.7804 42 1 11.5133 -3.2038 1.9859 43 1 13.1151 -1.2880 4.6509 44 1 11.5907 -0.9459 5.5038 45 1 13.9874 -1.6473 8.2105 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000811254932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:58 Heat of formation + Delta-G solvation = -116.075380 kcal Electronic energy + Delta-G solvation = -26171.246092 eV Core-core repulsion = 22279.763020 eV Total energy + Delta-G solvation = -3891.483072 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.96281 -40.58202 -39.05364 -37.77355 -36.69716 -35.22901 -34.85609 -33.11323 -31.95536 -29.72536 -28.30498 -27.57885 -26.09513 -25.18209 -24.15417 -23.36099 -21.70623 -20.41463 -19.77234 -19.07642 -18.70332 -18.14853 -17.83854 -17.44630 -17.29625 -16.76071 -16.31012 -16.14098 -15.88252 -15.33698 -14.91461 -14.73946 -14.58680 -14.28370 -14.09564 -14.01941 -13.72171 -13.66267 -13.56724 -13.40793 -13.34140 -13.16813 -13.07571 -12.83495 -12.68260 -12.58130 -12.52778 -12.47418 -12.22135 -12.04140 -11.92265 -11.70812 -11.66102 -11.58315 -10.66104 -10.64154 -9.53399 -9.39702 -9.36925 -8.23974 -6.38879 0.02450 0.66830 1.04990 1.07275 1.29281 1.37246 1.39551 1.50705 1.59179 1.83585 2.32371 2.43621 3.06267 3.38765 3.45642 3.74431 3.82097 3.85899 3.97431 4.00266 4.09416 4.27830 4.41459 4.45136 4.55097 4.57820 4.61219 4.63580 4.73563 4.75913 4.85113 4.87363 4.93373 4.98726 5.07005 5.12648 5.19339 5.29281 5.32711 5.37906 5.51030 5.64151 5.77377 6.02172 6.50743 6.63844 6.70381 7.18501 7.34840 8.83775 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.023765 B = 0.001862 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1177.897322 B =15034.310863 C =15299.378821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.183 4.183 3 C -0.152 4.152 4 C -0.134 4.134 5 C -0.191 4.191 6 C -0.028 4.028 7 C -0.103 4.103 8 C 0.463 3.537 9 O -0.525 6.525 10 O -0.346 6.346 11 C 0.080 3.920 12 H 0.122 0.878 13 C -0.159 4.159 14 C 0.500 3.500 15 O -0.578 6.578 16 N -0.600 5.600 17 C 0.067 3.933 18 C 0.258 3.742 19 C -0.544 4.544 20 H 0.058 0.942 21 C 0.007 3.993 22 N -0.928 5.928 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.283 1.283 27 S 0.084 5.916 28 H 0.084 0.916 29 H 0.072 0.928 30 H 0.089 0.911 31 H 0.155 0.845 32 H 0.151 0.849 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.063 0.937 40 H 0.072 0.928 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.030 0.970 44 H 0.000 1.000 45 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.197 0.819 -20.184 30.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.301 4.301 3 C -0.182 4.182 4 C -0.164 4.164 5 C -0.308 4.308 6 C -0.067 4.067 7 C -0.141 4.141 8 C 0.307 3.693 9 O -0.414 6.414 10 O -0.262 6.262 11 C 0.022 3.978 12 H 0.139 0.861 13 C -0.216 4.216 14 C 0.287 3.713 15 O -0.458 6.458 16 N -0.332 5.332 17 C -0.075 4.075 18 C 0.137 3.863 19 C -0.583 4.583 20 H 0.077 0.923 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.794 3.206 24 H -0.189 1.189 25 H -0.195 1.195 26 H -0.209 1.209 27 S 0.348 5.652 28 H 0.102 0.898 29 H 0.091 0.909 30 H 0.107 0.893 31 H 0.173 0.827 32 H 0.169 0.831 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.109 0.891 43 H 0.048 0.952 44 H 0.018 0.982 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.460 -0.497 -19.864 29.988 hybrid contribution 0.927 1.096 0.941 1.716 sum -21.533 0.599 -18.923 28.673 Atomic orbital electron populations 1.20444 0.86217 1.04020 1.03596 1.24884 1.01168 0.95251 1.08751 1.20328 0.92775 1.00179 1.04878 1.20386 0.97012 0.96123 1.02862 1.24322 0.98080 0.96789 1.11563 1.19822 0.89557 1.02911 0.94396 1.21509 0.87440 1.04961 1.00159 1.24366 0.90244 0.73708 0.80946 1.90630 1.67967 1.49804 1.33014 1.86656 1.28129 1.75890 1.35547 1.22529 0.80553 0.97246 0.97464 0.86073 1.22164 1.05107 0.90021 1.04297 1.20670 0.83014 0.78868 0.88722 1.90655 1.69906 1.47478 1.37777 1.48067 1.05028 1.65445 1.14707 1.22150 0.98810 1.01086 0.85433 1.18879 0.90138 0.95470 0.81822 1.21734 1.35316 0.95311 1.05898 0.92327 1.25878 0.95004 0.99688 0.98628 1.70059 1.37550 1.26334 1.22798 0.85337 0.78233 0.78971 0.78083 1.18854 1.19464 1.20878 1.84331 0.96888 1.10207 1.73792 0.89779 0.90906 0.89278 0.82721 0.83106 0.88832 0.89904 0.86051 0.86096 0.88677 0.88666 0.91751 0.90922 0.90107 0.89081 0.95171 0.98168 0.92359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.72 10.38 71.24 0.74 0.02 16 2 C -0.18 -2.55 6.51 24.59 0.16 -2.39 16 3 C -0.15 -2.12 10.05 21.22 0.21 -1.90 16 4 C -0.13 -2.02 10.05 21.22 0.21 -1.81 16 5 C -0.19 -3.09 5.76 24.59 0.14 -2.95 16 6 C -0.03 -0.45 5.00 29.85 0.15 -0.30 16 7 C -0.10 -1.87 5.79 29.85 0.17 -1.69 16 8 C 0.46 11.90 7.93 71.23 0.56 12.46 16 9 O -0.52 -14.61 15.20 21.97 0.33 -14.27 16 10 O -0.35 -11.22 9.47 -45.23 -0.43 -11.65 16 11 C 0.08 2.60 2.14 29.85 0.06 2.66 16 12 H 0.12 3.44 6.31 -2.39 -0.02 3.42 16 13 C -0.16 -4.22 9.19 71.98 0.66 -3.56 16 14 C 0.50 21.84 6.95 87.66 0.61 22.45 16 15 O -0.58 -31.36 16.13 15.24 0.25 -31.11 16 16 N -0.60 -25.75 2.86 -851.13 -2.43 -28.18 16 17 C 0.07 2.00 9.79 127.77 1.25 3.25 16 18 C 0.26 13.92 5.18 85.63 0.44 14.36 16 19 C -0.54 -31.01 9.39 25.60 0.24 -30.77 16 20 H 0.06 3.27 7.81 -2.91 -0.02 3.24 16 21 C 0.01 0.41 5.46 84.65 0.46 0.87 16 22 N -0.93 -55.87 13.29 21.45 0.28 -55.58 16 23 Si 0.97 44.46 29.54 68.60 2.03 46.49 16 24 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 25 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 27 S 0.08 1.30 23.31 -56.49 -1.32 -0.01 16 28 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 30 H 0.09 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.16 1.54 8.06 -2.91 -0.02 1.52 16 32 H 0.15 1.87 8.06 -2.91 -0.02 1.84 16 33 H 0.09 1.52 8.10 -2.39 -0.02 1.51 16 34 H 0.08 1.39 8.10 -2.39 -0.02 1.37 16 35 H 0.12 2.00 8.14 -2.39 -0.02 1.99 16 36 H 0.12 1.92 8.14 -2.38 -0.02 1.90 16 37 H 0.09 2.05 8.14 -2.39 -0.02 2.03 16 38 H 0.09 2.36 6.33 -2.39 -0.02 2.34 16 39 H 0.06 1.86 8.14 -2.38 -0.02 1.85 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.08 2.43 8.03 -2.39 -0.02 2.41 16 42 H 0.09 2.14 4.92 -2.38 -0.01 2.13 16 43 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 44 H 0.00 0.01 7.36 -2.39 -0.02 -0.01 16 45 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -76.70 395.27 5.79 -70.91 By element: Atomic # 1 Polarization: 11.73 SS G_CDS: 0.99 Total: 12.72 kcal Atomic # 6 Polarization: 4.61 SS G_CDS: 6.09 Total: 10.70 kcal Atomic # 7 Polarization: -81.62 SS G_CDS: -2.15 Total: -83.77 kcal Atomic # 8 Polarization: -57.19 SS G_CDS: 0.15 Total: -57.03 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -1.32 Total: -0.01 kcal Total: -76.70 5.79 -70.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000811254932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.166 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds