Wall clock time and date at job start Sat Apr 11 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 C 1.52994 * 109.47053 * 239.99800 * 2 1 3 5 5 C 1.53004 * 109.47098 * 186.80335 * 4 2 1 6 6 H 1.09005 * 109.46730 * 51.64443 * 5 4 2 7 7 C 1.50705 * 109.47085 * 171.63700 * 5 4 2 8 8 O 1.21280 * 119.99542 * 92.90888 * 7 5 4 9 9 N 1.34777 * 120.00417 * 272.91012 * 7 5 4 10 10 S 1.65602 * 119.99969 * 185.11710 * 9 7 5 11 11 O 1.42097 * 104.27225 * 181.07209 * 10 9 7 12 12 O 1.42099 * 104.27679 * 308.93024 * 10 9 7 13 13 C 1.81405 * 104.44679 * 65.00218 * 10 9 7 14 14 C 1.50701 * 109.46851 * 179.97438 * 13 10 9 15 15 H 1.08001 * 120.00006 * 0.02562 * 14 13 10 16 16 C 1.37871 * 119.99627 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00549 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99957 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47467 * 120.00008 * 18 16 14 21 21 H 1.48497 * 109.47273 * 240.00135 * 18 16 14 22 22 C 1.50695 * 109.47471 * 291.63887 * 5 4 2 23 23 C 1.38232 * 120.00171 * 306.53781 * 22 5 4 24 24 C 1.38240 * 120.00080 * 179.78278 * 23 22 5 25 25 C 1.38235 * 119.99563 * 0.44361 * 24 23 22 26 26 C 1.38231 * 120.00255 * 359.80920 * 25 24 23 27 27 C 1.38236 * 119.99705 * 126.80507 * 22 5 4 28 28 H 1.08994 * 109.47149 * 59.99623 * 1 2 3 29 29 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46704 * 299.99806 * 1 2 3 31 31 H 1.09003 * 109.47325 * 119.99574 * 2 1 3 32 32 H 1.09000 * 109.46907 * 41.03979 * 3 2 1 33 33 H 1.08996 * 109.47107 * 161.04135 * 3 2 1 34 34 H 1.08998 * 109.46878 * 281.03734 * 3 2 1 35 35 H 1.09000 * 109.47198 * 306.80401 * 4 2 1 36 36 H 1.08996 * 109.47121 * 66.80770 * 4 2 1 37 37 H 0.96998 * 119.99695 * 5.12769 * 9 7 5 38 38 H 1.09000 * 109.46888 * 300.00064 * 13 10 9 39 39 H 1.09005 * 109.46975 * 59.99944 * 13 10 9 40 40 H 0.97001 * 120.00515 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99937 * 359.97438 * 23 22 5 42 42 H 1.07992 * 119.99768 * 180.27580 * 24 23 22 43 43 H 1.08001 * 119.99704 * 179.82791 * 25 24 23 44 44 H 1.08003 * 120.00115 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00054 * 359.97438 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5604 -0.8710 -1.1667 6 1 3.8300 -1.3186 -0.2100 7 6 4.0396 -1.7562 -2.2882 8 8 4.3988 -1.2649 -3.3373 9 7 4.0689 -3.0938 -2.1256 10 16 4.7131 -4.0577 -3.3081 11 8 4.5516 -5.3787 -2.8098 12 8 4.0585 -3.6382 -4.4974 13 6 6.4692 -3.6051 -3.3543 14 6 7.1719 -4.4256 -4.4050 15 1 6.6174 -5.1469 -4.9870 16 6 8.5223 -4.2547 -4.6239 17 7 9.1974 -3.3760 -3.9156 18 14 9.3933 -5.2712 -5.9268 19 1 8.4176 -6.1813 -6.5787 20 1 9.9854 -4.3677 -6.9457 21 1 10.4694 -6.0733 -5.2914 22 6 4.2060 0.4854 -1.2864 23 6 3.9004 1.3042 -2.3574 24 6 4.4893 2.5503 -2.4649 25 6 5.3906 2.9738 -1.5061 26 6 5.7001 2.1528 -0.4379 27 6 5.1080 0.9086 -0.3281 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.4303 2.0434 0.6748 33 1 3.0774 1.4611 0.3339 34 1 1.9756 1.8506 -1.0087 35 1 1.5806 -1.7078 -1.3121 36 1 1.7795 -0.1420 -2.1349 37 1 3.7126 -3.4918 -1.3160 38 1 6.5652 -2.5464 -3.5951 39 1 6.9200 -3.7987 -2.3809 40 1 10.1476 -3.2560 -4.0693 41 1 3.1993 0.9717 -3.1086 42 1 4.2472 3.1918 -3.2992 43 1 5.8528 3.9462 -1.5915 44 1 6.4046 2.4835 0.3109 45 1 5.3496 0.2673 0.5065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835409807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:35 Heat of formation + Delta-G solvation = -104.758401 kcal Electronic energy + Delta-G solvation = -28219.192992 eV Core-core repulsion = 24328.200661 eV Total energy + Delta-G solvation = -3890.992331 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.74186 -38.84314 -36.69867 -36.21719 -35.17124 -34.10847 -33.36287 -32.68724 -30.88398 -29.23925 -29.05672 -27.15133 -25.03488 -23.57669 -22.68090 -22.41441 -20.59842 -20.04029 -19.19417 -17.61774 -17.18944 -16.90515 -16.41793 -15.78355 -15.44178 -15.22435 -15.00988 -14.67979 -14.57865 -14.39406 -14.21091 -13.76808 -13.54729 -13.22665 -13.18037 -12.65880 -12.54286 -12.36626 -12.17698 -12.01214 -11.89700 -11.70417 -11.46292 -11.29759 -11.20926 -11.14632 -11.11888 -10.95215 -10.93441 -10.83462 -10.75628 -10.64862 -10.46294 -9.89761 -9.75870 -9.18203 -8.77103 -8.72222 -8.55561 -6.33713 -4.45085 0.99426 1.38224 1.48826 2.37540 3.17064 3.20482 3.27720 3.34288 3.82886 4.21035 4.30006 4.40633 4.54642 4.64748 4.78309 4.86983 4.89989 4.98471 5.04320 5.15190 5.16976 5.19798 5.23817 5.30294 5.45126 5.49176 5.52434 5.56442 5.61782 5.73626 5.82185 5.85821 5.97512 6.00567 6.10159 6.16641 6.24729 6.49609 6.56339 6.58038 6.63175 6.74187 6.97699 7.05802 7.41336 7.72026 7.77905 8.56122 9.22475 10.78029 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003759 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.062192 B = 7447.090333 C = 8886.559954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.106 4.106 5 C -0.069 4.069 6 H 0.106 0.894 7 C 0.536 3.464 8 O -0.475 6.475 9 N -1.060 6.060 10 S 2.552 3.448 11 O -0.970 6.970 12 O -0.951 6.951 13 C -0.404 4.404 14 C -0.535 4.535 15 H 0.071 0.929 16 C 0.078 3.922 17 N -0.876 5.876 18 Si 0.907 3.093 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.277 1.277 22 C -0.064 4.064 23 C -0.083 4.083 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.123 4.123 27 C -0.112 4.112 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.424 0.576 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.268 0.732 41 H 0.124 0.876 42 H 0.120 0.880 43 H 0.118 0.882 44 H 0.120 0.880 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.506 11.681 12.201 21.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.109 4.109 3 C -0.216 4.216 4 C -0.144 4.144 5 C -0.092 4.092 6 H 0.125 0.875 7 C 0.321 3.679 8 O -0.345 6.345 9 N -0.820 5.820 10 S 2.654 3.346 11 O -0.960 6.960 12 O -0.941 6.941 13 C -0.540 4.540 14 C -0.574 4.574 15 H 0.089 0.911 16 C -0.129 4.129 17 N -0.512 5.512 18 Si 0.733 3.267 19 H -0.189 1.189 20 H -0.202 1.202 21 H -0.203 1.203 22 C -0.064 4.064 23 C -0.101 4.101 24 C -0.140 4.140 25 C -0.137 4.137 26 C -0.141 4.141 27 C -0.130 4.130 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.258 0.742 38 H 0.114 0.886 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.142 0.858 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.138 0.862 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.622 11.521 10.950 20.296 hybrid contribution 0.917 -0.386 0.106 1.001 sum -11.705 11.135 11.056 19.576 Atomic orbital electron populations 1.21858 0.95105 1.01730 1.01794 1.21080 0.95624 0.96828 0.97400 1.22305 1.01977 0.95265 1.02066 1.21726 0.91171 1.01859 0.99634 1.20473 0.97274 0.93117 0.98331 0.87548 1.20376 0.76354 0.81919 0.89254 1.90920 1.43135 1.73499 1.26932 1.55501 1.70391 1.17835 1.38286 1.07166 0.80778 0.73482 0.73158 1.93518 1.87595 1.35250 1.79672 1.93530 1.74119 1.81617 1.44861 1.27596 1.11708 1.08200 1.06541 1.20320 0.94812 1.22627 1.19674 0.91078 1.24921 0.96871 0.94967 0.96161 1.69964 1.08913 1.33009 1.39289 0.86281 0.79582 0.79996 0.80883 1.18938 1.20246 1.20290 1.19207 0.97527 0.93961 0.95748 1.20976 0.99336 0.93265 0.96529 1.21105 0.97538 0.96405 0.98908 1.21118 0.98040 0.99745 0.94802 1.21031 1.00023 0.94475 0.98584 1.20968 0.96570 0.96571 0.98937 0.92628 0.92678 0.92676 0.91010 0.93475 0.91213 0.92218 0.90818 0.90373 0.74203 0.88571 0.89712 0.92192 0.85799 0.86211 0.86407 0.86208 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.11 37.16 0.34 -0.73 16 2 C -0.09 -0.73 2.90 -90.62 -0.26 -0.99 16 3 C -0.16 -1.37 7.78 37.16 0.29 -1.08 16 4 C -0.11 -1.03 4.18 -26.73 -0.11 -1.15 16 5 C -0.07 -0.80 2.34 -92.92 -0.22 -1.01 16 6 H 0.11 0.93 7.85 -51.93 -0.41 0.52 16 7 C 0.54 8.71 6.64 -10.98 -0.07 8.64 16 8 O -0.48 -9.75 13.36 -12.78 -0.17 -9.92 16 9 N -1.06 -16.82 5.60 31.22 0.17 -16.65 16 10 S 2.55 55.61 5.04 -107.50 -0.54 55.07 16 11 O -0.97 -22.24 18.08 -57.54 -1.04 -23.28 16 12 O -0.95 -23.80 16.92 -65.16 -1.10 -24.90 16 13 C -0.40 -10.13 5.66 36.01 0.20 -9.93 16 14 C -0.53 -15.12 9.13 -34.44 -0.31 -15.44 16 15 H 0.07 1.97 7.71 -52.49 -0.40 1.56 16 16 C 0.08 2.17 5.46 -17.82 -0.10 2.08 16 17 N -0.88 -25.18 13.29 55.43 0.74 -24.45 16 18 Si 0.91 21.29 29.54 -169.99 -5.02 16.26 16 19 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 20 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C -0.06 -0.79 2.34 -104.63 -0.24 -1.03 16 23 C -0.08 -1.08 6.05 -39.58 -0.24 -1.32 16 24 C -0.12 -1.44 10.05 -39.58 -0.40 -1.83 16 25 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 26 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 27 C -0.11 -1.27 7.86 -39.58 -0.31 -1.58 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.05 0.36 8.13 -51.93 -0.42 -0.06 16 31 H 0.07 0.52 8.10 -51.93 -0.42 0.10 16 32 H 0.05 0.37 7.99 -51.93 -0.41 -0.05 16 33 H 0.07 0.63 4.83 -51.93 -0.25 0.38 16 34 H 0.06 0.56 6.26 -51.93 -0.32 0.23 16 35 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 36 H 0.08 0.82 6.61 -51.93 -0.34 0.48 16 37 H 0.42 4.78 8.79 -34.48 -0.30 4.47 16 38 H 0.10 2.54 7.41 -51.92 -0.38 2.15 16 39 H 0.08 2.05 8.14 -51.92 -0.42 1.62 16 40 H 0.27 7.17 8.31 -40.82 -0.34 6.83 16 41 H 0.12 1.65 6.87 -52.48 -0.36 1.29 16 42 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 43 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 44 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 45 H 0.12 1.14 7.96 -52.49 -0.42 0.72 16 LS Contribution 376.27 15.07 5.67 5.67 Total: -1.00 -36.05 376.27 -10.08 -46.12 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: -6.55 Total: 4.88 kcal Atomic # 6 Polarization: -26.58 SS G_CDS: -2.23 Total: -28.81 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 0.91 Total: -41.09 kcal Atomic # 8 Polarization: -55.79 SS G_CDS: -2.31 Total: -58.10 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: 55.61 SS G_CDS: -0.54 Total: 55.07 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.05 -10.08 -46.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.634 kcal (2) G-P(sol) polarization free energy of solvation -36.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds