Wall clock time and date at job start Sat Apr 11 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47236 * 2 1 4 4 C 1.52994 * 109.47053 * 239.99800 * 2 1 3 5 5 C 1.53004 * 109.47098 * 186.80335 * 4 2 1 6 6 H 1.09005 * 109.46730 * 51.64443 * 5 4 2 7 7 C 1.50705 * 109.47085 * 171.63700 * 5 4 2 8 8 O 1.21280 * 119.99542 * 92.90888 * 7 5 4 9 9 N 1.34777 * 120.00417 * 272.91012 * 7 5 4 10 10 S 1.65602 * 119.99969 * 185.11710 * 9 7 5 11 11 O 1.42097 * 104.27225 * 181.07209 * 10 9 7 12 12 O 1.42099 * 104.27679 * 308.93024 * 10 9 7 13 13 C 1.81405 * 104.44679 * 65.00218 * 10 9 7 14 14 C 1.50701 * 109.46851 * 179.97438 * 13 10 9 15 15 H 1.08001 * 120.00006 * 0.02562 * 14 13 10 16 16 C 1.37871 * 119.99627 * 179.97438 * 14 13 10 17 17 N 1.31512 * 120.00549 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99957 * 180.02562 * 16 14 13 19 19 H 1.48498 * 109.47021 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47467 * 120.00008 * 18 16 14 21 21 H 1.48497 * 109.47273 * 240.00135 * 18 16 14 22 22 C 1.50695 * 109.47471 * 291.63887 * 5 4 2 23 23 C 1.38232 * 120.00171 * 306.53781 * 22 5 4 24 24 C 1.38240 * 120.00080 * 179.78278 * 23 22 5 25 25 C 1.38235 * 119.99563 * 0.44361 * 24 23 22 26 26 C 1.38231 * 120.00255 * 359.80920 * 25 24 23 27 27 C 1.38236 * 119.99705 * 126.80507 * 22 5 4 28 28 H 1.08994 * 109.47149 * 59.99623 * 1 2 3 29 29 H 1.09001 * 109.47242 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46704 * 299.99806 * 1 2 3 31 31 H 1.09003 * 109.47325 * 119.99574 * 2 1 3 32 32 H 1.09000 * 109.46907 * 41.03979 * 3 2 1 33 33 H 1.08996 * 109.47107 * 161.04135 * 3 2 1 34 34 H 1.08998 * 109.46878 * 281.03734 * 3 2 1 35 35 H 1.09000 * 109.47198 * 306.80401 * 4 2 1 36 36 H 1.08996 * 109.47121 * 66.80770 * 4 2 1 37 37 H 0.96998 * 119.99695 * 5.12769 * 9 7 5 38 38 H 1.09000 * 109.46888 * 300.00064 * 13 10 9 39 39 H 1.09005 * 109.46975 * 59.99944 * 13 10 9 40 40 H 0.97001 * 120.00515 * 179.97438 * 17 16 14 41 41 H 1.08003 * 119.99937 * 359.97438 * 23 22 5 42 42 H 1.07992 * 119.99768 * 180.27580 * 24 23 22 43 43 H 1.08001 * 119.99704 * 179.82791 * 25 24 23 44 44 H 1.08003 * 120.00115 * 179.97438 * 26 25 24 45 45 H 1.07995 * 120.00054 * 359.97438 * 27 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7213 -1.2492 5 6 3.5604 -0.8710 -1.1667 6 1 3.8300 -1.3186 -0.2100 7 6 4.0396 -1.7562 -2.2882 8 8 4.3988 -1.2649 -3.3373 9 7 4.0689 -3.0938 -2.1256 10 16 4.7131 -4.0577 -3.3081 11 8 4.5516 -5.3787 -2.8098 12 8 4.0585 -3.6382 -4.4974 13 6 6.4692 -3.6051 -3.3543 14 6 7.1719 -4.4256 -4.4050 15 1 6.6174 -5.1469 -4.9870 16 6 8.5223 -4.2547 -4.6239 17 7 9.1974 -3.3760 -3.9156 18 14 9.3933 -5.2712 -5.9268 19 1 8.4176 -6.1813 -6.5787 20 1 9.9854 -4.3677 -6.9457 21 1 10.4694 -6.0733 -5.2914 22 6 4.2060 0.4854 -1.2864 23 6 3.9004 1.3042 -2.3574 24 6 4.4893 2.5503 -2.4649 25 6 5.3906 2.9738 -1.5061 26 6 5.7001 2.1528 -0.4379 27 6 5.1080 0.9086 -0.3281 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 0.8900 32 1 1.4303 2.0434 0.6748 33 1 3.0774 1.4611 0.3339 34 1 1.9756 1.8506 -1.0087 35 1 1.5806 -1.7078 -1.3121 36 1 1.7795 -0.1420 -2.1349 37 1 3.7126 -3.4918 -1.3160 38 1 6.5652 -2.5464 -3.5951 39 1 6.9200 -3.7987 -2.3809 40 1 10.1476 -3.2560 -4.0693 41 1 3.1993 0.9717 -3.1086 42 1 4.2472 3.1918 -3.2992 43 1 5.8528 3.9462 -1.5915 44 1 6.4046 2.4835 0.3109 45 1 5.3496 0.2673 0.5065 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835409807.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:34 Heat of formation + Delta-G solvation = -128.997216 kcal Electronic energy + Delta-G solvation = -28220.244065 eV Core-core repulsion = 24328.200661 eV Total energy + Delta-G solvation = -3892.043405 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.87152 -39.95262 -38.12941 -37.42962 -37.06899 -35.59477 -35.43798 -33.53825 -31.75430 -31.13682 -30.09490 -27.76714 -26.00542 -25.61543 -23.70009 -23.40899 -21.62413 -20.89106 -20.70783 -19.31943 -18.65446 -18.39955 -17.73951 -17.48710 -16.64972 -16.44450 -16.29001 -16.12260 -15.96725 -15.48930 -15.36829 -14.67003 -14.55428 -14.42212 -14.18521 -14.05341 -14.02673 -13.66433 -13.50276 -13.37505 -13.22566 -13.11522 -13.04690 -12.77806 -12.64807 -12.59164 -12.55063 -12.07550 -11.99797 -11.86576 -11.82334 -11.73659 -11.54666 -11.44979 -11.15262 -11.01918 -10.82112 -9.65494 -9.45154 -8.45286 -6.64865 -0.77898 0.46077 0.59748 1.05754 1.35522 1.36688 1.51027 1.62017 2.27965 2.72092 2.88425 2.89055 3.18516 3.39668 3.54739 3.82221 3.91010 4.10450 4.14739 4.16945 4.24073 4.33553 4.39894 4.48979 4.61605 4.68313 4.70249 4.74838 4.82712 4.87443 4.92505 5.06542 5.11523 5.16028 5.21707 5.23178 5.26248 5.36251 5.53917 5.59299 5.63540 5.64972 5.69362 5.70423 5.78204 6.18161 6.43936 6.49585 7.07247 8.67759 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013536 B = 0.003759 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2068.062192 B = 7447.090333 C = 8886.559954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.084 4.084 3 C -0.157 4.157 4 C -0.106 4.106 5 C -0.059 4.059 6 H 0.144 0.856 7 C 0.532 3.468 8 O -0.521 6.521 9 N -1.041 6.041 10 S 2.596 3.404 11 O -0.979 6.979 12 O -0.985 6.985 13 C -0.419 4.419 14 C -0.570 4.570 15 H 0.067 0.933 16 C 0.026 3.974 17 N -0.906 5.906 18 Si 0.967 3.033 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.261 1.261 22 C -0.077 4.077 23 C -0.101 4.101 24 C -0.136 4.136 25 C -0.124 4.124 26 C -0.129 4.129 27 C -0.118 4.118 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.066 0.934 34 H 0.044 0.956 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.448 0.552 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.275 0.725 41 H 0.108 0.892 42 H 0.128 0.872 43 H 0.139 0.861 44 H 0.143 0.857 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.712 11.548 14.058 22.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.102 4.102 3 C -0.214 4.214 4 C -0.144 4.144 5 C -0.082 4.082 6 H 0.162 0.838 7 C 0.320 3.680 8 O -0.393 6.393 9 N -0.807 5.807 10 S 2.696 3.304 11 O -0.969 6.969 12 O -0.975 6.975 13 C -0.554 4.554 14 C -0.608 4.608 15 H 0.085 0.915 16 C -0.177 4.177 17 N -0.542 5.542 18 Si 0.789 3.211 19 H -0.185 1.185 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.077 4.077 23 C -0.119 4.119 24 C -0.154 4.154 25 C -0.142 4.142 26 C -0.147 4.147 27 C -0.136 4.136 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.108 0.892 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.287 0.713 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.146 0.854 43 H 0.156 0.844 44 H 0.161 0.839 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -12.825 11.368 12.837 21.413 hybrid contribution 0.934 -0.245 -0.419 1.052 sum -11.891 11.123 12.418 20.477 Atomic orbital electron populations 1.21853 0.94468 1.02181 1.01925 1.21051 0.96066 0.96219 0.96907 1.22266 1.01947 0.95839 1.01358 1.21780 0.89825 1.02563 1.00207 1.20600 0.98236 0.91828 0.97519 0.83837 1.21372 0.74998 0.81798 0.89857 1.90909 1.45166 1.74049 1.29200 1.54940 1.69779 1.17636 1.38384 1.05517 0.78703 0.73090 0.73082 1.93497 1.87171 1.36298 1.79977 1.93487 1.73992 1.82355 1.47641 1.27641 1.15417 1.06497 1.05870 1.20748 0.95867 1.23372 1.20851 0.91484 1.25868 0.97611 0.96027 0.98242 1.70039 1.09500 1.34103 1.40590 0.85364 0.78695 0.78698 0.78333 1.18539 1.19389 1.18587 1.19328 0.98227 0.94122 0.96035 1.21013 0.99842 0.94189 0.96887 1.21323 0.97994 0.96370 0.99757 1.21427 0.97552 1.00747 0.94479 1.21390 1.00078 0.94301 0.98919 1.21288 0.95871 0.97169 0.99274 0.93373 0.92075 0.91723 0.89213 0.92748 0.91534 0.93645 0.89720 0.91864 0.71270 0.90736 0.89441 0.91612 0.87348 0.85354 0.84353 0.83918 0.83789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.11 71.98 0.66 -1.16 16 2 C -0.08 -1.15 2.90 -10.80 -0.03 -1.18 16 3 C -0.16 -2.46 7.78 71.98 0.56 -1.90 16 4 C -0.11 -1.91 4.18 30.59 0.13 -1.78 16 5 C -0.06 -1.27 2.34 -12.28 -0.03 -1.30 16 6 H 0.14 1.99 7.85 -2.38 -0.02 1.97 16 7 C 0.53 17.07 6.64 87.66 0.58 17.65 16 8 O -0.52 -22.02 13.36 14.50 0.19 -21.83 16 9 N -1.04 -31.96 5.60 -173.53 -0.97 -32.94 16 10 S 2.60 113.53 5.04 -56.49 -0.28 113.24 16 11 O -0.98 -44.17 18.08 -127.65 -2.31 -46.48 16 12 O -0.98 -50.10 16.92 -120.37 -2.04 -52.14 16 13 C -0.42 -21.60 5.66 71.24 0.40 -21.20 16 14 C -0.57 -32.87 9.13 25.60 0.23 -32.64 16 15 H 0.07 3.79 7.71 -2.91 -0.02 3.77 16 16 C 0.03 1.48 5.46 84.65 0.46 1.94 16 17 N -0.91 -52.71 13.29 21.44 0.28 -52.42 16 18 Si 0.97 43.50 29.54 68.60 2.03 45.53 16 19 H -0.26 -11.48 7.11 99.48 0.71 -10.78 16 20 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 22 C -0.08 -1.83 2.34 -19.87 -0.05 -1.87 16 23 C -0.10 -2.69 6.05 22.27 0.13 -2.56 16 24 C -0.14 -3.26 10.05 22.27 0.22 -3.04 16 25 C -0.12 -2.60 10.05 22.27 0.22 -2.37 16 26 C -0.13 -2.57 10.05 22.27 0.22 -2.34 16 27 C -0.12 -2.45 7.86 22.27 0.18 -2.28 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.69 8.13 -2.38 -0.02 0.67 16 31 H 0.09 0.95 8.10 -2.39 -0.02 0.93 16 32 H 0.05 0.75 7.99 -2.39 -0.02 0.73 16 33 H 0.07 1.08 4.83 -2.39 -0.01 1.07 16 34 H 0.04 0.84 6.26 -2.39 -0.01 0.82 16 35 H 0.08 1.33 8.12 -2.39 -0.02 1.31 16 36 H 0.06 1.34 6.61 -2.39 -0.02 1.32 16 37 H 0.45 9.01 8.79 -96.74 -0.85 8.16 16 38 H 0.07 4.12 7.41 -2.39 -0.02 4.10 16 39 H 0.09 4.32 8.14 -2.39 -0.02 4.31 16 40 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 41 H 0.11 3.11 6.87 -2.91 -0.02 3.09 16 42 H 0.13 2.67 8.06 -2.91 -0.02 2.64 16 43 H 0.14 2.22 8.06 -2.91 -0.02 2.20 16 44 H 0.14 2.12 8.06 -2.91 -0.02 2.10 16 45 H 0.14 2.24 7.96 -2.91 -0.02 2.22 16 Total: -1.00 -79.35 376.27 0.95 -78.40 By element: Atomic # 1 Polarization: 24.51 SS G_CDS: 0.15 Total: 24.65 kcal Atomic # 6 Polarization: -59.92 SS G_CDS: 3.90 Total: -56.02 kcal Atomic # 7 Polarization: -84.67 SS G_CDS: -0.69 Total: -85.36 kcal Atomic # 8 Polarization: -116.30 SS G_CDS: -4.15 Total: -120.45 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: 113.53 SS G_CDS: -0.28 Total: 113.24 kcal Total: -79.35 0.95 -78.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835409807.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.598 kcal (2) G-P(sol) polarization free energy of solvation -79.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds