Wall clock time and date at job start Sat Apr 11 2020 05:38:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 C 1.53005 * 109.46822 * 120.00361 * 2 1 3 5 5 H 1.08994 * 109.47020 * 54.49538 * 4 2 1 6 6 C 1.52998 * 109.46854 * 174.49935 * 4 2 1 7 7 C 1.50700 * 109.47114 * 294.65330 * 6 4 2 8 8 C 1.38241 * 120.00346 * 275.51907 * 7 6 4 9 9 C 1.38228 * 120.00174 * 179.76245 * 8 7 6 10 10 C 1.38236 * 119.99965 * 0.51036 * 9 8 7 11 11 C 1.38234 * 120.00333 * 359.74119 * 10 9 8 12 12 C 1.38232 * 119.99535 * 0.02562 * 11 10 9 13 13 C 1.50706 * 109.46880 * 294.49278 * 4 2 1 14 14 O 1.21277 * 119.99904 * 255.46975 * 13 4 2 15 15 N 1.34777 * 119.99434 * 75.47061 * 13 4 2 16 16 S 1.65602 * 119.99252 * 183.74227 * 15 13 4 17 17 O 1.42110 * 104.27165 * 181.06947 * 16 15 13 18 18 O 1.42100 * 104.27887 * 308.92620 * 16 15 13 19 19 C 1.81401 * 104.45248 * 65.00022 * 16 15 13 20 20 C 1.50697 * 109.47117 * 179.97438 * 19 16 15 21 21 H 1.08002 * 119.99899 * 359.97438 * 20 19 16 22 22 C 1.37876 * 119.99934 * 179.97438 * 20 19 16 23 23 N 1.31518 * 119.99956 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00137 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46941 * 89.99824 * 24 22 20 26 26 H 1.48495 * 109.47161 * 210.00118 * 24 22 20 27 27 H 1.48505 * 109.47056 * 330.00206 * 24 22 20 28 28 H 1.09001 * 109.47013 * 59.36791 * 1 2 3 29 29 H 1.09001 * 109.47351 * 179.36543 * 1 2 3 30 30 H 1.08993 * 109.47013 * 299.36746 * 1 2 3 31 31 H 1.09003 * 109.47452 * 240.00126 * 2 1 3 32 32 H 1.08996 * 109.47111 * 184.85144 * 3 2 1 33 33 H 1.08999 * 109.47326 * 304.86004 * 3 2 1 34 34 H 1.09004 * 109.46582 * 64.85836 * 3 2 1 35 35 H 1.08999 * 109.47586 * 54.65556 * 6 4 2 36 36 H 1.08999 * 109.46985 * 174.65592 * 6 4 2 37 37 H 1.07997 * 119.99521 * 359.97438 * 8 7 6 38 38 H 1.08006 * 120.00133 * 180.23066 * 9 8 7 39 39 H 1.07999 * 119.99768 * 179.72527 * 10 9 8 40 40 H 1.07995 * 120.00350 * 179.97438 * 11 10 9 41 41 H 1.08008 * 120.00071 * 179.97438 * 12 11 10 42 42 H 0.96994 * 120.00384 * 3.73438 * 15 13 4 43 43 H 1.08997 * 109.46675 * 299.99901 * 19 16 15 44 44 H 1.09001 * 109.47317 * 59.99559 * 19 16 15 45 45 H 0.96996 * 119.99930 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 1.5983 -1.7165 1.2998 6 6 3.5637 -0.8422 1.1820 7 6 3.9464 -1.7358 0.0305 8 6 3.9673 -3.1079 0.1976 9 6 4.3136 -3.9278 -0.8601 10 6 4.6492 -3.3752 -2.0819 11 6 4.6334 -2.0029 -2.2476 12 6 4.2824 -1.1832 -1.1913 13 6 1.6520 0.0634 2.4760 14 8 2.4853 0.7181 3.0657 15 7 0.3789 0.0376 2.9176 16 16 -0.0683 0.9720 4.2096 17 8 -1.4442 0.6715 4.3998 18 8 0.8931 0.6686 5.2110 19 6 0.1360 2.6777 3.6269 20 6 -0.2455 3.6336 4.7276 21 1 -0.5780 3.2531 5.6821 22 6 -0.1699 4.9940 4.5162 23 7 -0.5024 5.8283 5.4770 24 14 0.4045 5.6521 2.8651 25 1 -0.7658 5.8285 1.9682 26 1 1.0794 6.9602 3.0613 27 1 1.3566 4.6907 2.2531 28 1 -0.3633 0.5236 -0.8843 29 1 -0.3634 -1.0276 -0.0114 30 1 -0.3633 0.5039 0.8955 31 1 1.8934 -0.5138 -0.8900 32 1 3.1265 1.4437 -0.0869 33 1 1.6074 1.9809 -0.8432 34 1 1.7495 1.9305 0.9304 35 1 4.0005 0.1457 1.0361 36 1 3.9356 -1.2700 2.1130 37 1 3.7097 -3.5394 1.1535 38 1 4.3263 -5.0000 -0.7306 39 1 4.9241 -4.0156 -2.9070 40 1 4.8960 -1.5711 -3.2020 41 1 4.2704 -0.1110 -1.3206 42 1 -0.2754 -0.5282 2.4787 43 1 1.1759 2.8433 3.3455 44 1 -0.5056 2.8455 2.7619 45 1 -0.4496 6.7853 5.3281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835410045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:43 Heat of formation + Delta-G solvation = -103.738650 kcal Electronic energy + Delta-G solvation = -28304.582183 eV Core-core repulsion = 24413.634072 eV Total energy + Delta-G solvation = -3890.948111 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.78936 -39.34143 -36.67094 -36.16941 -35.29199 -34.33402 -33.28456 -32.75266 -31.14600 -29.86370 -29.30875 -27.37379 -25.17753 -23.12356 -22.85153 -22.23514 -21.57461 -19.93378 -19.09342 -17.70306 -17.32559 -16.88437 -16.56803 -16.34836 -15.57275 -15.45023 -15.31334 -14.83096 -14.72161 -14.21737 -14.01726 -13.94181 -13.70444 -13.56371 -13.06613 -12.85926 -12.75127 -12.56386 -12.54399 -12.15328 -12.01406 -11.87730 -11.69623 -11.41503 -11.31515 -11.30397 -11.23830 -11.21484 -10.98747 -10.87781 -10.74539 -10.58746 -10.33176 -9.95307 -9.81184 -9.43380 -9.15989 -8.92772 -8.85027 -6.33468 -4.42932 0.83631 1.09917 1.14718 2.26586 3.05186 3.13498 3.22167 3.23338 3.52815 4.12722 4.20750 4.38063 4.47079 4.54523 4.66419 4.68772 4.76279 4.79906 4.86732 4.92452 5.06286 5.11571 5.15963 5.22352 5.25476 5.31669 5.37214 5.50955 5.61159 5.65400 5.73331 5.75804 5.82308 5.86742 5.97289 6.09954 6.13910 6.19994 6.23805 6.26888 6.28697 6.41882 6.75640 6.84112 7.14737 7.65008 7.97799 8.56816 9.21057 10.77494 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.003459 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.760416 B = 8092.387303 C = 8890.514534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.162 4.162 4 C -0.099 4.099 5 H 0.102 0.898 6 C -0.072 4.072 7 C -0.074 4.074 8 C -0.117 4.117 9 C -0.119 4.119 10 C -0.127 4.127 11 C -0.119 4.119 12 C -0.114 4.114 13 C 0.539 3.461 14 O -0.484 6.484 15 N -1.063 6.063 16 S 2.574 3.426 17 O -0.961 6.961 18 O -0.942 6.942 19 C -0.458 4.458 20 C -0.533 4.533 21 H 0.087 0.913 22 C 0.091 3.909 23 N -0.879 5.879 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.280 1.280 27 H -0.260 1.260 28 H 0.065 0.935 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.122 0.878 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.426 0.574 43 H 0.096 0.904 44 H 0.080 0.920 45 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.468 -16.978 -19.063 26.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.106 4.106 3 C -0.219 4.219 4 C -0.122 4.122 5 H 0.120 0.880 6 C -0.110 4.110 7 C -0.074 4.074 8 C -0.135 4.135 9 C -0.137 4.137 10 C -0.145 4.145 11 C -0.138 4.138 12 C -0.132 4.132 13 C 0.325 3.675 14 O -0.355 6.355 15 N -0.825 5.825 16 S 2.675 3.325 17 O -0.951 6.951 18 O -0.933 6.933 19 C -0.593 4.593 20 C -0.572 4.572 21 H 0.105 0.895 22 C -0.116 4.116 23 N -0.514 5.514 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.205 1.205 27 H -0.185 1.185 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.138 0.862 41 H 0.141 0.859 42 H 0.262 0.738 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 7.796 -16.675 -17.719 25.550 hybrid contribution -0.022 0.496 -1.491 1.572 sum 7.774 -16.178 -19.210 26.291 Atomic orbital electron populations 1.22154 0.94770 1.02383 1.03179 1.21143 0.96116 0.96786 0.96524 1.22056 1.01685 0.95278 1.02905 1.21539 0.97562 1.00196 0.92940 0.88001 1.20555 0.93147 1.00442 0.96824 1.19860 0.98669 0.93931 0.94970 1.21105 1.00195 0.93074 0.99135 1.21140 0.99573 0.99726 0.93249 1.21140 1.00647 0.95210 0.97491 1.21152 0.99975 0.93765 0.98860 1.21141 0.99451 1.00028 0.92608 1.20479 0.80944 0.80929 0.85176 1.90911 1.48365 1.39907 1.56278 1.55706 1.18140 1.57065 1.51547 1.06401 0.73886 0.78419 0.73834 1.93546 1.33448 1.84448 1.83698 1.93553 1.62009 1.83310 1.54387 1.28097 1.06962 1.16371 1.07910 1.20012 1.48879 0.90535 0.97725 0.89539 1.24850 0.93355 0.96181 0.97208 1.69859 1.45641 1.03301 1.32591 0.86746 0.79723 0.79046 0.83871 1.19576 1.20492 1.18483 0.91569 0.91962 0.91946 0.89107 0.91837 0.91936 0.92059 0.89185 0.89799 0.85989 0.86200 0.86356 0.86191 0.85870 0.73801 0.88623 0.90174 0.91779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.45 8.42 37.16 0.31 -1.14 16 2 C -0.09 -0.81 2.50 -90.62 -0.23 -1.03 16 3 C -0.16 -1.77 8.62 37.16 0.32 -1.45 16 4 C -0.10 -1.03 1.97 -91.77 -0.18 -1.21 16 5 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 6 C -0.07 -0.74 4.03 -27.88 -0.11 -0.85 16 7 C -0.07 -0.67 4.55 -104.62 -0.48 -1.15 16 8 C -0.12 -0.99 9.72 -39.58 -0.38 -1.37 16 9 C -0.12 -0.91 10.05 -39.59 -0.40 -1.31 16 10 C -0.13 -0.94 10.05 -39.58 -0.40 -1.34 16 11 C -0.12 -0.91 10.05 -39.58 -0.40 -1.31 16 12 C -0.11 -0.96 8.28 -39.58 -0.33 -1.29 16 13 C 0.54 7.99 4.99 -10.98 -0.05 7.94 16 14 O -0.48 -9.08 14.12 -12.50 -0.18 -9.26 16 15 N -1.06 -15.79 4.33 31.22 0.14 -15.66 16 16 S 2.57 53.83 5.04 -107.50 -0.54 53.29 16 17 O -0.96 -21.44 18.08 -57.54 -1.04 -22.48 16 18 O -0.94 -23.04 16.95 -65.07 -1.10 -24.15 16 19 C -0.46 -10.51 4.72 36.00 0.17 -10.34 16 20 C -0.53 -15.06 9.68 -34.44 -0.33 -15.39 16 21 H 0.09 2.63 7.96 -52.49 -0.42 2.21 16 22 C 0.09 2.58 5.47 -17.82 -0.10 2.49 16 23 N -0.88 -26.24 13.96 55.43 0.77 -25.46 16 24 Si 0.88 20.59 27.47 -169.99 -4.67 15.92 16 25 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 26 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 27 H -0.26 -5.75 6.54 56.52 0.37 -5.38 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.61 5.62 -51.93 -0.29 0.32 16 31 H 0.09 0.73 6.23 -51.93 -0.32 0.41 16 32 H 0.06 0.63 6.29 -51.93 -0.33 0.31 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.83 6.74 -51.93 -0.35 0.48 16 35 H 0.09 0.98 6.31 -51.93 -0.33 0.66 16 36 H 0.08 0.91 8.12 -51.93 -0.42 0.49 16 37 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 38 H 0.12 0.70 8.06 -52.48 -0.42 0.27 16 39 H 0.12 0.65 8.06 -52.49 -0.42 0.23 16 40 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 41 H 0.12 0.93 7.65 -52.48 -0.40 0.53 16 42 H 0.43 4.60 7.28 -34.47 -0.25 4.35 16 43 H 0.10 2.17 6.40 -51.93 -0.33 1.84 16 44 H 0.08 1.62 7.57 -51.92 -0.39 1.23 16 45 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 373.07 15.07 5.62 5.62 Total: -1.00 -36.14 373.07 -9.97 -46.11 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.39 Total: 4.81 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -2.58 Total: -28.76 kcal Atomic # 7 Polarization: -42.03 SS G_CDS: 0.91 Total: -41.12 kcal Atomic # 8 Polarization: -53.56 SS G_CDS: -2.32 Total: -55.88 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -4.67 Total: 15.92 kcal Atomic # 16 Polarization: 53.83 SS G_CDS: -0.54 Total: 53.29 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.14 -9.97 -46.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.627 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds