Wall clock time and date at job start Sat Apr 11 2020 05:38:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47255 * 2 1 4 4 C 1.53005 * 109.46822 * 120.00361 * 2 1 3 5 5 H 1.08994 * 109.47020 * 54.49538 * 4 2 1 6 6 C 1.52998 * 109.46854 * 174.49935 * 4 2 1 7 7 C 1.50700 * 109.47114 * 294.65330 * 6 4 2 8 8 C 1.38241 * 120.00346 * 275.51907 * 7 6 4 9 9 C 1.38228 * 120.00174 * 179.76245 * 8 7 6 10 10 C 1.38236 * 119.99965 * 0.51036 * 9 8 7 11 11 C 1.38234 * 120.00333 * 359.74119 * 10 9 8 12 12 C 1.38232 * 119.99535 * 0.02562 * 11 10 9 13 13 C 1.50706 * 109.46880 * 294.49278 * 4 2 1 14 14 O 1.21277 * 119.99904 * 255.46975 * 13 4 2 15 15 N 1.34777 * 119.99434 * 75.47061 * 13 4 2 16 16 S 1.65602 * 119.99252 * 183.74227 * 15 13 4 17 17 O 1.42110 * 104.27165 * 181.06947 * 16 15 13 18 18 O 1.42100 * 104.27887 * 308.92620 * 16 15 13 19 19 C 1.81401 * 104.45248 * 65.00022 * 16 15 13 20 20 C 1.50697 * 109.47117 * 179.97438 * 19 16 15 21 21 H 1.08002 * 119.99899 * 359.97438 * 20 19 16 22 22 C 1.37876 * 119.99934 * 179.97438 * 20 19 16 23 23 N 1.31518 * 119.99956 * 180.02562 * 22 20 19 24 24 Si 1.86799 * 120.00137 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.46941 * 89.99824 * 24 22 20 26 26 H 1.48495 * 109.47161 * 210.00118 * 24 22 20 27 27 H 1.48505 * 109.47056 * 330.00206 * 24 22 20 28 28 H 1.09001 * 109.47013 * 59.36791 * 1 2 3 29 29 H 1.09001 * 109.47351 * 179.36543 * 1 2 3 30 30 H 1.08993 * 109.47013 * 299.36746 * 1 2 3 31 31 H 1.09003 * 109.47452 * 240.00126 * 2 1 3 32 32 H 1.08996 * 109.47111 * 184.85144 * 3 2 1 33 33 H 1.08999 * 109.47326 * 304.86004 * 3 2 1 34 34 H 1.09004 * 109.46582 * 64.85836 * 3 2 1 35 35 H 1.08999 * 109.47586 * 54.65556 * 6 4 2 36 36 H 1.08999 * 109.46985 * 174.65592 * 6 4 2 37 37 H 1.07997 * 119.99521 * 359.97438 * 8 7 6 38 38 H 1.08006 * 120.00133 * 180.23066 * 9 8 7 39 39 H 1.07999 * 119.99768 * 179.72527 * 10 9 8 40 40 H 1.07995 * 120.00350 * 179.97438 * 11 10 9 41 41 H 1.08008 * 120.00071 * 179.97438 * 12 11 10 42 42 H 0.96994 * 120.00384 * 3.73438 * 15 13 4 43 43 H 1.08997 * 109.46675 * 299.99901 * 19 16 15 44 44 H 1.09001 * 109.47317 * 59.99559 * 19 16 15 45 45 H 0.96996 * 119.99930 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7214 1.2493 5 1 1.5983 -1.7165 1.2998 6 6 3.5637 -0.8422 1.1820 7 6 3.9464 -1.7358 0.0305 8 6 3.9673 -3.1079 0.1976 9 6 4.3136 -3.9278 -0.8601 10 6 4.6492 -3.3752 -2.0819 11 6 4.6334 -2.0029 -2.2476 12 6 4.2824 -1.1832 -1.1913 13 6 1.6520 0.0634 2.4760 14 8 2.4853 0.7181 3.0657 15 7 0.3789 0.0376 2.9176 16 16 -0.0683 0.9720 4.2096 17 8 -1.4442 0.6715 4.3998 18 8 0.8931 0.6686 5.2110 19 6 0.1360 2.6777 3.6269 20 6 -0.2455 3.6336 4.7276 21 1 -0.5780 3.2531 5.6821 22 6 -0.1699 4.9940 4.5162 23 7 -0.5024 5.8283 5.4770 24 14 0.4045 5.6521 2.8651 25 1 -0.7658 5.8285 1.9682 26 1 1.0794 6.9602 3.0613 27 1 1.3566 4.6907 2.2531 28 1 -0.3633 0.5236 -0.8843 29 1 -0.3634 -1.0276 -0.0114 30 1 -0.3633 0.5039 0.8955 31 1 1.8934 -0.5138 -0.8900 32 1 3.1265 1.4437 -0.0869 33 1 1.6074 1.9809 -0.8432 34 1 1.7495 1.9305 0.9304 35 1 4.0005 0.1457 1.0361 36 1 3.9356 -1.2700 2.1130 37 1 3.7097 -3.5394 1.1535 38 1 4.3263 -5.0000 -0.7306 39 1 4.9241 -4.0156 -2.9070 40 1 4.8960 -1.5711 -3.2020 41 1 4.2704 -0.1110 -1.3206 42 1 -0.2754 -0.5282 2.4787 43 1 1.1759 2.8433 3.3455 44 1 -0.5056 2.8455 2.7619 45 1 -0.4496 6.7853 5.3281 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410045.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:42 Heat of formation + Delta-G solvation = -128.607851 kcal Electronic energy + Delta-G solvation = -28305.660593 eV Core-core repulsion = 24413.634072 eV Total energy + Delta-G solvation = -3892.026521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86809 -40.05298 -38.24007 -37.29233 -37.10655 -35.63857 -35.38016 -33.46262 -31.87685 -31.69690 -30.05905 -28.12210 -26.04588 -25.15911 -23.45973 -23.23405 -22.23807 -21.06739 -20.48536 -19.62563 -18.40056 -18.34430 -17.75987 -17.45145 -17.00246 -16.56096 -16.19227 -16.10466 -16.00894 -15.66076 -14.85923 -14.77362 -14.74789 -14.66018 -14.35838 -14.11830 -13.93770 -13.66427 -13.58893 -13.49472 -13.26474 -13.18798 -13.13811 -12.90440 -12.67633 -12.60726 -12.35024 -12.12422 -11.91966 -11.90188 -11.86095 -11.83812 -11.72448 -11.47337 -11.26883 -11.02479 -10.95700 -9.72329 -9.53061 -8.49150 -6.66290 -0.86364 0.50345 0.58638 1.05784 1.28470 1.33125 1.43986 1.59298 2.23817 2.66677 2.81905 2.92511 3.10240 3.32349 3.66255 3.76545 3.88531 4.02757 4.09156 4.17608 4.24480 4.33653 4.38383 4.40126 4.43547 4.47608 4.56951 4.71768 4.73091 4.76350 4.93771 4.99139 5.04146 5.05801 5.12676 5.18256 5.26804 5.27171 5.41451 5.44664 5.66571 5.70116 5.72218 5.76750 5.80665 6.20274 6.36924 6.47326 7.02305 8.66076 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017124 B = 0.003459 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.760416 B = 8092.387303 C = 8890.514534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.080 4.080 3 C -0.168 4.168 4 C -0.090 4.090 5 H 0.132 0.868 6 C -0.069 4.069 7 C -0.082 4.082 8 C -0.127 4.127 9 C -0.125 4.125 10 C -0.130 4.130 11 C -0.125 4.125 12 C -0.122 4.122 13 C 0.537 3.463 14 O -0.525 6.525 15 N -1.042 6.042 16 S 2.602 3.398 17 O -0.978 6.978 18 O -0.984 6.984 19 C -0.468 4.468 20 C -0.556 4.556 21 H 0.042 0.958 22 C 0.029 3.971 23 N -0.929 5.929 24 Si 0.947 3.053 25 H -0.247 1.247 26 H -0.275 1.275 27 H -0.240 1.240 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.112 0.888 32 H 0.066 0.934 33 H 0.076 0.924 34 H 0.031 0.969 35 H 0.079 0.921 36 H 0.071 0.929 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.129 0.871 42 H 0.447 0.553 43 H 0.101 0.899 44 H 0.113 0.887 45 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.935 -18.680 -23.228 30.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.098 4.098 3 C -0.225 4.225 4 C -0.113 4.113 5 H 0.150 0.850 6 C -0.107 4.107 7 C -0.082 4.082 8 C -0.145 4.145 9 C -0.143 4.143 10 C -0.148 4.148 11 C -0.143 4.143 12 C -0.140 4.140 13 C 0.326 3.674 14 O -0.398 6.398 15 N -0.810 5.810 16 S 2.701 3.299 17 O -0.968 6.968 18 O -0.974 6.974 19 C -0.602 4.602 20 C -0.595 4.595 21 H 0.061 0.939 22 C -0.173 4.173 23 N -0.566 5.566 24 Si 0.767 3.233 25 H -0.171 1.171 26 H -0.201 1.201 27 H -0.163 1.163 28 H 0.095 0.905 29 H 0.103 0.897 30 H 0.066 0.934 31 H 0.130 0.870 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.050 0.950 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.155 0.845 41 H 0.146 0.854 42 H 0.288 0.712 43 H 0.119 0.881 44 H 0.131 0.869 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.226 -18.398 -21.888 29.753 hybrid contribution -0.134 0.931 -0.178 0.958 sum 8.093 -17.467 -22.066 29.283 Atomic orbital electron populations 1.22244 0.94038 1.03926 1.02961 1.21157 0.96685 0.95698 0.96271 1.22126 1.02233 0.96346 1.01841 1.21665 0.97948 1.00865 0.90792 0.85010 1.20477 0.92908 1.00221 0.97082 1.19726 0.99927 0.93946 0.94642 1.21265 1.00458 0.93000 0.99820 1.21399 0.99106 1.00651 0.93120 1.21455 0.99861 0.95506 0.98014 1.21411 0.99521 0.93976 0.99383 1.21268 0.99598 1.00538 0.92622 1.21418 0.79897 0.80345 0.85786 1.90899 1.49368 1.41835 1.57682 1.55163 1.19099 1.56442 1.50278 1.05223 0.72864 0.77756 0.74015 1.93513 1.34362 1.84447 1.84517 1.93500 1.63166 1.83689 1.57012 1.28110 1.07677 1.17160 1.07293 1.20262 1.49174 0.92201 0.97817 0.93941 1.25959 0.93133 0.96331 1.01877 1.70001 1.47194 1.03979 1.35391 0.85706 0.80401 0.78614 0.78585 1.17100 1.20060 1.16346 0.90535 0.89658 0.93412 0.87034 0.91481 0.90552 0.95016 0.90256 0.91001 0.85407 0.84538 0.84443 0.84489 0.85357 0.71208 0.88146 0.86884 0.91287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.38 8.42 71.98 0.61 -1.78 16 2 C -0.08 -1.22 2.50 -10.79 -0.03 -1.25 16 3 C -0.17 -3.28 8.62 71.98 0.62 -2.66 16 4 C -0.09 -1.66 1.97 -11.54 -0.02 -1.68 16 5 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 6 C -0.07 -1.33 4.03 29.85 0.12 -1.21 16 7 C -0.08 -1.31 4.55 -19.86 -0.09 -1.40 16 8 C -0.13 -1.85 9.72 22.27 0.22 -1.63 16 9 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 10 C -0.13 -1.52 10.05 22.27 0.22 -1.29 16 11 C -0.13 -1.53 10.05 22.27 0.22 -1.31 16 12 C -0.12 -1.74 8.28 22.27 0.18 -1.56 16 13 C 0.54 15.32 4.99 87.66 0.44 15.76 16 14 O -0.52 -19.77 14.12 14.24 0.20 -19.57 16 15 N -1.04 -29.64 4.33 -173.53 -0.75 -30.39 16 16 S 2.60 109.88 5.04 -56.49 -0.28 109.60 16 17 O -0.98 -43.84 18.08 -127.65 -2.31 -46.14 16 18 O -0.98 -49.59 16.95 -120.45 -2.04 -51.63 16 19 C -0.47 -21.52 4.72 71.23 0.34 -21.18 16 20 C -0.56 -32.53 9.68 25.60 0.25 -32.29 16 21 H 0.04 2.76 7.96 -2.91 -0.02 2.74 16 22 C 0.03 1.68 5.47 84.65 0.46 2.15 16 23 N -0.93 -57.38 13.96 21.45 0.30 -57.09 16 24 Si 0.95 41.89 27.47 68.60 1.88 43.77 16 25 H -0.25 -9.98 7.11 99.48 0.71 -9.28 16 26 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 27 H -0.24 -9.76 6.54 99.48 0.65 -9.11 16 28 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.05 0.79 5.62 -2.39 -0.01 0.78 16 31 H 0.11 1.35 6.23 -2.39 -0.01 1.33 16 32 H 0.07 1.23 6.29 -2.39 -0.02 1.21 16 33 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.03 0.80 6.74 -2.38 -0.02 0.79 16 35 H 0.08 1.68 6.31 -2.39 -0.02 1.67 16 36 H 0.07 1.53 8.12 -2.39 -0.02 1.51 16 37 H 0.13 1.62 8.06 -2.91 -0.02 1.59 16 38 H 0.14 1.17 8.06 -2.91 -0.02 1.14 16 39 H 0.14 1.02 8.06 -2.91 -0.02 0.99 16 40 H 0.14 1.15 8.06 -2.91 -0.02 1.12 16 41 H 0.13 1.63 7.65 -2.91 -0.02 1.60 16 42 H 0.45 8.60 7.28 -96.75 -0.70 7.90 16 43 H 0.10 4.54 6.40 -2.39 -0.02 4.53 16 44 H 0.11 4.40 7.57 -2.39 -0.02 4.38 16 45 H 0.28 15.68 8.31 -92.71 -0.77 14.91 16 Total: -1.00 -81.98 373.07 1.01 -80.97 By element: Atomic # 1 Polarization: 22.88 SS G_CDS: 0.25 Total: 23.12 kcal Atomic # 6 Polarization: -56.42 SS G_CDS: 3.76 Total: -52.65 kcal Atomic # 7 Polarization: -87.03 SS G_CDS: -0.45 Total: -87.48 kcal Atomic # 8 Polarization: -113.19 SS G_CDS: -4.15 Total: -117.34 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 1.88 Total: 43.77 kcal Atomic # 16 Polarization: 109.88 SS G_CDS: -0.28 Total: 109.60 kcal Total: -81.98 1.01 -80.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410045.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.636 kcal (2) G-P(sol) polarization free energy of solvation -81.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds