Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47552 * 2 1 4 4 C 1.52997 * 109.47444 * 239.99527 * 2 1 3 5 5 H 1.09001 * 109.47073 * 301.93669 * 4 2 1 6 6 C 1.53001 * 109.47389 * 181.93390 * 4 2 1 7 7 C 1.50705 * 109.47009 * 65.95704 * 6 4 2 8 8 O 1.21289 * 119.99854 * 6.00670 * 7 6 4 9 9 N 1.34770 * 119.99919 * 186.00955 * 7 6 4 10 10 S 1.65607 * 119.99967 * 179.97438 * 9 7 6 11 11 O 1.42101 * 104.27696 * 181.07038 * 10 9 7 12 12 O 1.42096 * 104.27470 * 308.92811 * 10 9 7 13 13 C 1.81398 * 104.44831 * 64.99971 * 10 9 7 14 14 C 1.50700 * 109.47053 * 179.97438 * 13 10 9 15 15 H 1.07997 * 120.00185 * 0.02562 * 14 13 10 16 16 C 1.37879 * 119.99934 * 179.97438 * 14 13 10 17 17 N 1.31516 * 119.99894 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 119.99779 * 180.02562 * 16 14 13 19 19 H 1.48497 * 109.47276 * 60.00462 * 18 16 14 20 20 H 1.48502 * 109.47155 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.47221 * 300.00202 * 18 16 14 22 22 C 1.50695 * 109.47003 * 61.93451 * 4 2 1 23 23 C 1.38234 * 120.00265 * 76.90064 * 22 4 2 24 24 C 1.38236 * 120.00199 * 179.81364 * 23 22 4 25 25 C 1.38236 * 119.99836 * 0.39080 * 24 23 22 26 26 C 1.38234 * 120.00018 * 359.86041 * 25 24 23 27 27 C 1.38234 * 119.99922 * 257.17157 * 22 4 2 28 28 H 1.09001 * 109.46743 * 54.75538 * 1 2 3 29 29 H 1.08998 * 109.47270 * 294.75889 * 1 2 3 30 30 H 1.08999 * 109.47184 * 174.75132 * 1 2 3 31 31 H 1.09004 * 109.46434 * 119.99918 * 2 1 3 32 32 H 1.09003 * 109.47443 * 66.55875 * 3 2 1 33 33 H 1.09002 * 109.47433 * 186.56179 * 3 2 1 34 34 H 1.09000 * 109.46985 * 306.56296 * 3 2 1 35 35 H 1.08994 * 109.46980 * 185.95549 * 6 4 2 36 36 H 1.08995 * 109.46833 * 305.96142 * 6 4 2 37 37 H 0.96999 * 120.00160 * 359.97438 * 9 7 6 38 38 H 1.09004 * 109.47089 * 300.00010 * 13 10 9 39 39 H 1.08999 * 109.47391 * 60.00124 * 13 10 9 40 40 H 0.97003 * 119.99390 * 179.97438 * 17 16 14 41 41 H 1.07994 * 119.99612 * 359.97438 * 23 22 4 42 42 H 1.07993 * 120.00063 * 180.22583 * 24 23 22 43 43 H 1.08001 * 120.00225 * 179.83860 * 25 24 23 44 44 H 1.08004 * 120.00210 * 179.97438 * 26 25 24 45 45 H 1.08002 * 120.00127 * 359.97438 * 27 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0401 -0.7213 -1.2491 5 1 1.6487 -1.7385 -1.2666 6 6 3.5693 -0.7636 -1.2250 7 6 4.0300 -1.6240 -0.0767 8 8 3.2194 -2.2387 0.5838 9 7 5.3426 -1.7104 0.2163 10 16 5.8488 -2.6554 1.4786 11 8 7.2592 -2.4835 1.5014 12 8 5.0424 -2.2402 2.5725 13 6 5.4215 -4.3458 0.9782 14 6 5.8384 -5.3101 2.0587 15 1 6.3126 -4.9427 2.9568 16 6 5.6136 -6.6612 1.9012 17 7 5.0357 -7.1086 0.8078 18 14 6.1298 -7.8563 3.2408 19 1 5.4237 -7.5200 4.5032 20 1 5.7801 -9.2402 2.8312 21 1 7.5964 -7.7590 3.4528 22 6 1.5773 0.0161 -2.4791 23 6 2.2097 1.1836 -2.8640 24 6 1.7877 1.8579 -3.9945 25 6 0.7281 1.3692 -4.7356 26 6 0.0923 0.2046 -4.3479 27 6 0.5169 -0.4719 -3.2195 28 1 -0.3633 0.5931 -0.8393 29 1 -0.3634 0.4304 0.9332 30 1 -0.3633 -1.0233 -0.0940 31 1 1.8932 -0.5139 0.8901 32 1 1.7758 1.9213 0.9429 33 1 3.1238 1.4446 -0.1174 34 1 1.5841 1.9890 -0.8254 35 1 3.9360 -1.1819 -2.1623 36 1 3.9588 0.2468 -1.1009 37 1 5.9909 -1.2191 -0.3121 38 1 4.3451 -4.4175 0.8224 39 1 5.9400 -4.5926 0.0518 40 1 4.8778 -8.0592 0.6969 41 1 3.0351 1.5673 -2.2828 42 1 2.2840 2.7680 -4.2971 43 1 0.3966 1.8975 -5.6174 44 1 -0.7358 -0.1771 -4.9267 45 1 0.0202 -1.3819 -2.9167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410094.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -130.709649 kcal Electronic energy + Delta-G solvation = -27808.495752 eV Core-core repulsion = 23916.378090 eV Total energy + Delta-G solvation = -3892.117661 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.67857 -40.27434 -38.10909 -37.35328 -37.03878 -35.57249 -35.40986 -32.58579 -31.81799 -31.11892 -30.67881 -28.08514 -26.16597 -25.58077 -23.40918 -22.80206 -22.41030 -20.84334 -20.22892 -19.24502 -18.61178 -18.33893 -17.59048 -17.32017 -16.76473 -16.57220 -16.23678 -16.15848 -15.98344 -15.73063 -15.25565 -14.82755 -14.51668 -14.31464 -14.15288 -14.11153 -13.85927 -13.51360 -13.49040 -13.32293 -13.20232 -13.09222 -12.95998 -12.85353 -12.73995 -12.69707 -12.56010 -12.18302 -11.99801 -11.88333 -11.76862 -11.64645 -11.53025 -11.39484 -11.06038 -10.96188 -10.79690 -9.67378 -9.48296 -8.44135 -6.63365 -0.72652 0.55168 0.61493 1.13161 1.36008 1.40201 1.48125 1.65465 2.28770 2.76515 2.90119 2.97522 3.16531 3.42062 3.63326 3.89998 3.95899 4.08335 4.19031 4.25015 4.27112 4.31246 4.44814 4.50314 4.62447 4.64808 4.71220 4.74711 4.79347 4.84464 4.90242 5.01851 5.07535 5.11497 5.17068 5.27164 5.27371 5.33214 5.46628 5.53963 5.66730 5.70140 5.74393 5.78845 5.85177 6.22715 6.45791 6.56899 7.08348 8.68565 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.017452 B = 0.002904 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1604.022649 B = 9638.003935 C =10110.846379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.099 4.099 3 C -0.153 4.153 4 C -0.032 4.032 5 H 0.071 0.929 6 C -0.133 4.133 7 C 0.527 3.473 8 O -0.527 6.527 9 N -1.043 6.043 10 S 2.598 3.402 11 O -0.982 6.982 12 O -0.985 6.985 13 C -0.422 4.422 14 C -0.570 4.570 15 H 0.067 0.933 16 C 0.025 3.975 17 N -0.907 5.907 18 Si 0.966 3.034 19 H -0.265 1.265 20 H -0.268 1.268 21 H -0.258 1.258 22 C -0.072 4.072 23 C -0.120 4.120 24 C -0.124 4.124 25 C -0.132 4.132 26 C -0.128 4.128 27 C -0.129 4.129 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.066 0.934 34 H 0.074 0.926 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.448 0.552 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.275 0.725 41 H 0.140 0.860 42 H 0.141 0.859 43 H 0.137 0.863 44 H 0.132 0.868 45 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.212 19.198 -13.566 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.118 4.118 3 C -0.210 4.210 4 C -0.051 4.051 5 H 0.089 0.911 6 C -0.174 4.174 7 C 0.316 3.684 8 O -0.400 6.400 9 N -0.809 5.809 10 S 2.698 3.302 11 O -0.972 6.972 12 O -0.975 6.975 13 C -0.556 4.556 14 C -0.609 4.609 15 H 0.085 0.915 16 C -0.178 4.178 17 N -0.544 5.544 18 Si 0.787 3.213 19 H -0.190 1.190 20 H -0.193 1.193 21 H -0.182 1.182 22 C -0.072 4.072 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.149 4.149 26 C -0.146 4.146 27 C -0.147 4.147 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.152 0.848 36 H 0.155 0.845 37 H 0.287 0.713 38 H 0.097 0.903 39 H 0.103 0.897 40 H 0.084 0.916 41 H 0.158 0.842 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.150 0.850 45 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -7.462 18.984 -12.409 23.876 hybrid contribution 0.123 -1.265 0.084 1.274 sum -7.340 17.719 -12.325 22.797 Atomic orbital electron populations 1.21752 0.94742 1.01314 1.01726 1.21187 0.96610 0.97018 0.96951 1.22120 1.01491 0.94969 1.02395 1.19964 0.92994 0.99275 0.92879 0.91086 1.22157 0.97220 1.01749 0.96306 1.21516 0.80313 0.80908 0.85662 1.90897 1.52884 1.44906 1.51354 1.54945 1.16082 1.59476 1.50438 1.05414 0.73005 0.77833 0.73903 1.93494 1.30991 1.86594 1.86158 1.93485 1.70670 1.81332 1.52018 1.27659 1.06953 1.14503 1.06509 1.20701 1.43830 0.92979 1.03353 0.91488 1.25870 0.93590 0.99871 0.98479 1.70033 1.40817 1.15872 1.27647 0.85486 0.79802 0.77350 0.78614 1.18980 1.19257 1.18172 1.19624 0.96424 0.95985 0.95171 1.21324 1.00685 0.94557 0.97160 1.21430 0.97170 1.00556 0.94986 1.21432 0.96526 0.96427 1.00556 1.21342 1.00499 0.95988 0.96746 1.21191 0.97216 1.00397 0.95862 0.91822 0.92875 0.93665 0.92456 0.93017 0.91545 0.90688 0.84800 0.84482 0.71292 0.90338 0.89683 0.91646 0.84187 0.84076 0.84527 0.85045 0.86601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.03 8.75 71.98 0.63 -2.40 16 2 C -0.10 -2.32 2.51 -10.80 -0.03 -2.34 16 3 C -0.15 -2.72 7.65 71.98 0.55 -2.17 16 4 C -0.03 -0.69 1.57 -11.54 -0.02 -0.71 16 5 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 6 C -0.13 -2.54 4.46 29.85 0.13 -2.41 16 7 C 0.53 15.98 7.16 87.66 0.63 16.61 16 8 O -0.53 -21.28 12.38 13.32 0.16 -21.12 16 9 N -1.04 -30.89 5.60 -173.53 -0.97 -31.86 16 10 S 2.60 111.88 5.03 -56.49 -0.28 111.59 16 11 O -0.98 -44.03 18.08 -127.65 -2.31 -46.34 16 12 O -0.98 -49.18 17.04 -120.72 -2.06 -51.24 16 13 C -0.42 -21.55 5.64 71.24 0.40 -21.15 16 14 C -0.57 -32.76 9.13 25.60 0.23 -32.53 16 15 H 0.07 3.75 7.71 -2.91 -0.02 3.73 16 16 C 0.03 1.44 5.46 84.65 0.46 1.90 16 17 N -0.91 -52.88 13.29 21.45 0.28 -52.59 16 18 Si 0.97 43.45 29.54 68.60 2.03 45.47 16 19 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 20 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 21 H -0.26 -11.02 7.11 99.48 0.71 -10.32 16 22 C -0.07 -1.27 3.69 -19.87 -0.07 -1.35 16 23 C -0.12 -1.66 6.92 22.27 0.15 -1.51 16 24 C -0.12 -1.54 10.05 22.27 0.22 -1.31 16 25 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 26 C -0.13 -1.95 10.05 22.27 0.22 -1.73 16 27 C -0.13 -2.33 9.12 22.27 0.20 -2.13 16 28 H 0.06 1.24 7.14 -2.39 -0.02 1.23 16 29 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 1.77 6.22 -2.38 -0.01 1.76 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.07 0.99 5.73 -2.39 -0.01 0.98 16 34 H 0.07 1.14 5.99 -2.39 -0.01 1.12 16 35 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.14 1.69 4.94 -2.39 -0.01 1.68 16 37 H 0.45 8.60 8.79 -96.74 -0.85 7.75 16 38 H 0.08 4.27 7.19 -2.39 -0.02 4.26 16 39 H 0.09 4.20 8.14 -2.39 -0.02 4.18 16 40 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 41 H 0.14 1.42 5.59 -2.91 -0.02 1.40 16 42 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 43 H 0.14 1.21 8.06 -2.91 -0.02 1.18 16 44 H 0.13 1.57 8.06 -2.91 -0.02 1.55 16 45 H 0.12 2.14 8.02 -2.91 -0.02 2.11 16 Total: -1.00 -78.88 372.64 0.97 -77.91 By element: Atomic # 1 Polarization: 22.74 SS G_CDS: 0.16 Total: 22.91 kcal Atomic # 6 Polarization: -58.68 SS G_CDS: 3.95 Total: -54.73 kcal Atomic # 7 Polarization: -83.77 SS G_CDS: -0.69 Total: -84.46 kcal Atomic # 8 Polarization: -114.49 SS G_CDS: -4.20 Total: -118.69 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Atomic # 16 Polarization: 111.88 SS G_CDS: -0.28 Total: 111.59 kcal Total: -78.88 0.97 -77.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410094.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.799 kcal (2) G-P(sol) polarization free energy of solvation -78.878 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.911 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds