Wall clock time and date at job start Sat Apr 11 2020 05:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47297 * 2 1 4 4 C 1.52996 * 109.47423 * 119.99554 * 2 1 3 5 5 H 1.09002 * 109.47571 * 302.88798 * 4 2 1 6 6 C 1.53005 * 109.47169 * 62.88477 * 4 2 1 7 7 C 1.50696 * 109.47545 * 186.06355 * 6 4 2 8 8 O 1.21280 * 119.99837 * 0.95727 * 7 6 4 9 9 N 1.34775 * 120.00077 * 180.68616 * 7 6 4 10 10 S 1.65596 * 120.00293 * 180.27221 * 9 7 6 11 11 O 1.42098 * 104.27983 * 181.06972 * 10 9 7 12 12 O 1.42098 * 104.27814 * 308.92989 * 10 9 7 13 13 C 1.81405 * 104.44770 * 64.99989 * 10 9 7 14 14 C 1.50701 * 109.46844 * 180.02562 * 13 10 9 15 15 H 1.07997 * 120.00127 * 359.97438 * 14 13 10 16 16 C 1.37880 * 119.99640 * 179.97438 * 14 13 10 17 17 N 1.31513 * 120.00140 * 0.02562 * 16 14 13 18 18 Si 1.86807 * 119.99826 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47030 * 0.02562 * 18 16 14 20 20 H 1.48499 * 109.46958 * 120.00415 * 18 16 14 21 21 H 1.48493 * 109.47170 * 240.00164 * 18 16 14 22 22 C 1.50697 * 109.47648 * 182.88121 * 4 2 1 23 23 C 1.38231 * 120.00385 * 299.73173 * 22 4 2 24 24 C 1.38234 * 120.00349 * 179.78285 * 23 22 4 25 25 C 1.38240 * 119.99771 * 0.44609 * 24 23 22 26 26 C 1.38234 * 119.99933 * 359.80545 * 25 24 23 27 27 C 1.38234 * 120.00269 * 359.97438 * 26 25 24 28 28 H 1.09001 * 109.46767 * 292.11302 * 1 2 3 29 29 H 1.08998 * 109.47080 * 52.11007 * 1 2 3 30 30 H 1.08999 * 109.47306 * 172.10943 * 1 2 3 31 31 H 1.08998 * 109.47480 * 240.00155 * 2 1 3 32 32 H 1.09004 * 109.47174 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.46788 * 299.99970 * 3 2 1 34 34 H 1.08998 * 109.47153 * 60.00024 * 3 2 1 35 35 H 1.09000 * 109.46685 * 66.05491 * 6 4 2 36 36 H 1.09006 * 109.46509 * 306.06405 * 6 4 2 37 37 H 0.97005 * 120.00089 * 0.26791 * 9 7 6 38 38 H 1.08997 * 109.46961 * 299.99985 * 13 10 9 39 39 H 1.08995 * 109.47461 * 60.00164 * 13 10 9 40 40 H 0.97004 * 119.99803 * 179.97438 * 17 16 14 41 41 H 1.08004 * 119.99995 * 359.97438 * 23 22 4 42 42 H 1.07997 * 120.00280 * 180.27069 * 24 23 22 43 43 H 1.07997 * 120.00157 * 179.83692 * 25 24 23 44 44 H 1.07997 * 120.00242 * 180.02562 * 26 25 24 45 45 H 1.07993 * 120.00420 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7211 1.2492 5 1 1.6351 -0.2380 2.1385 6 6 1.5902 -2.1831 1.2136 7 6 1.9630 -2.8552 2.5099 8 8 2.5168 -2.2223 3.3837 9 7 1.6760 -4.1582 2.7002 10 16 2.0795 -4.8951 4.1272 11 8 1.6555 -6.2409 3.9589 12 8 3.4523 -4.5769 4.3100 13 6 1.0608 -4.0578 5.3729 14 6 1.3423 -4.6474 6.7309 15 1 2.0617 -5.4462 6.8342 16 6 0.6813 -4.1670 7.8415 17 7 -0.1952 -3.1946 7.7157 18 14 1.0298 -4.8983 9.5248 19 1 2.0483 -5.9714 9.3971 20 1 1.5401 -3.8371 10.4295 21 1 -0.2218 -5.4674 10.0859 22 6 3.5453 -0.6596 1.2855 23 6 4.2848 -1.2164 0.2589 24 6 5.6655 -1.1560 0.2900 25 6 6.3069 -0.5469 1.3523 26 6 5.5676 0.0054 2.3815 27 6 4.1868 -0.0510 2.3482 28 1 -0.3633 0.3869 0.9521 29 1 -0.3633 0.6311 -0.8110 30 1 -0.3634 -1.0179 -0.1411 31 1 1.8934 -0.5138 -0.8900 32 1 3.1301 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9564 0.8900 35 1 2.0807 -2.6940 0.3851 36 1 0.5094 -2.2274 1.0790 37 1 1.2329 -4.6644 2.0013 38 1 1.2995 -2.9943 5.3824 39 1 0.0067 -4.1914 5.1299 40 1 -0.6604 -2.8569 8.4970 41 1 3.7838 -1.6960 -0.5690 42 1 6.2431 -1.5872 -0.5142 43 1 7.3857 -0.5020 1.3779 44 1 6.0686 0.4817 3.2112 45 1 3.6092 0.3801 3.1524 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:47 Heat of formation + Delta-G solvation = -135.084344 kcal Electronic energy + Delta-G solvation = -28124.927243 eV Core-core repulsion = 24232.619880 eV Total energy + Delta-G solvation = -3892.307362 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.53940 -40.05173 -38.10905 -37.47118 -37.04408 -35.54281 -35.40316 -32.73439 -31.70095 -31.12539 -30.75829 -27.73952 -26.10640 -25.57835 -23.56899 -22.83040 -22.18092 -20.82247 -20.23866 -19.29390 -18.59359 -18.28771 -17.90569 -17.47478 -16.69833 -16.49456 -16.19614 -15.96438 -15.91280 -15.38133 -15.24565 -14.88627 -14.54522 -14.40786 -14.14405 -14.09441 -13.65079 -13.58881 -13.49400 -13.24396 -13.20914 -13.12813 -13.08621 -12.85102 -12.77837 -12.59589 -12.41830 -12.15817 -11.97098 -11.84596 -11.83437 -11.74440 -11.39718 -11.32133 -11.16336 -11.00519 -10.81767 -9.70450 -9.44755 -8.45423 -6.64389 -0.72115 0.55972 0.61792 1.20605 1.34786 1.35956 1.50254 1.67231 2.27851 2.76769 2.88917 2.96750 3.20941 3.45742 3.71339 3.74741 4.01678 4.16907 4.18652 4.23370 4.34022 4.35880 4.47008 4.54835 4.64332 4.66252 4.70871 4.74109 4.81186 4.89856 4.94456 5.01644 5.13365 5.15386 5.24651 5.26581 5.27154 5.35658 5.52135 5.57969 5.65997 5.66243 5.71524 5.83131 5.87025 6.23678 6.44952 6.62769 7.07378 8.67672 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.013153 B = 0.003482 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2128.269338 B = 8040.459631 C = 8322.652708 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.076 4.076 3 C -0.146 4.146 4 C -0.035 4.035 5 H 0.068 0.932 6 C -0.131 4.131 7 C 0.520 3.480 8 O -0.523 6.523 9 N -1.044 6.044 10 S 2.596 3.404 11 O -0.984 6.984 12 O -0.988 6.988 13 C -0.419 4.419 14 C -0.569 4.569 15 H 0.065 0.935 16 C 0.026 3.974 17 N -0.906 5.906 18 Si 0.966 3.034 19 H -0.262 1.262 20 H -0.269 1.269 21 H -0.261 1.261 22 C -0.071 4.071 23 C -0.127 4.127 24 C -0.129 4.129 25 C -0.139 4.139 26 C -0.141 4.141 27 C -0.117 4.117 28 H 0.045 0.955 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.043 0.957 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.447 0.553 38 H 0.078 0.922 39 H 0.086 0.914 40 H 0.275 0.725 41 H 0.149 0.851 42 H 0.144 0.856 43 H 0.134 0.866 44 H 0.120 0.880 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.949 7.395 -21.361 22.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.095 4.095 3 C -0.203 4.203 4 C -0.054 4.054 5 H 0.086 0.914 6 C -0.172 4.172 7 C 0.309 3.691 8 O -0.396 6.396 9 N -0.811 5.811 10 S 2.696 3.304 11 O -0.975 6.975 12 O -0.978 6.978 13 C -0.554 4.554 14 C -0.608 4.608 15 H 0.083 0.917 16 C -0.177 4.177 17 N -0.543 5.543 18 Si 0.788 3.212 19 H -0.186 1.186 20 H -0.194 1.194 21 H -0.185 1.185 22 C -0.071 4.071 23 C -0.145 4.145 24 C -0.147 4.147 25 C -0.157 4.157 26 C -0.159 4.159 27 C -0.135 4.135 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.062 0.938 35 H 0.154 0.846 36 H 0.161 0.839 37 H 0.286 0.714 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.167 0.833 42 H 0.162 0.838 43 H 0.152 0.848 44 H 0.138 0.862 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.878 7.282 -20.606 22.043 hybrid contribution -0.390 0.055 1.374 1.429 sum 2.489 7.337 -19.232 20.734 Atomic orbital electron populations 1.21965 0.93986 1.03092 1.02032 1.21102 0.96299 0.95857 0.96209 1.21824 1.00684 0.96070 1.01713 1.20170 0.90768 0.94227 1.00266 0.91400 1.22176 1.06483 0.95467 0.93088 1.21683 0.75529 0.80233 0.91692 1.90914 1.39184 1.63508 1.45955 1.54931 1.69379 1.20848 1.35917 1.05451 0.75561 0.74168 0.75201 1.93487 1.84022 1.34531 1.85412 1.93488 1.33858 1.84978 1.85462 1.27641 1.09511 1.08623 1.09642 1.20755 1.26951 1.21593 0.91531 0.91689 1.25853 0.93628 0.94620 1.03602 1.70038 1.25599 1.26345 1.32286 0.85383 0.79233 0.78932 0.77658 1.18637 1.19368 1.18549 1.19854 0.95726 0.97244 0.94239 1.21281 0.94126 1.00169 0.98909 1.21436 0.95078 0.99329 0.98838 1.21376 1.00603 0.99044 0.94678 1.21337 0.94380 1.00879 0.99288 1.21117 0.94805 0.99837 0.97752 0.93560 0.91402 0.90754 0.88774 0.93549 0.91343 0.93809 0.84579 0.83865 0.71365 0.90345 0.89598 0.91630 0.83293 0.83838 0.84823 0.86222 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 8.71 71.98 0.63 -1.15 16 2 C -0.08 -1.05 2.29 -10.79 -0.02 -1.07 16 3 C -0.15 -2.29 8.90 71.98 0.64 -1.65 16 4 C -0.04 -0.72 1.27 -11.54 -0.01 -0.73 16 5 H 0.07 1.73 7.64 -2.39 -0.02 1.71 16 6 C -0.13 -2.34 4.93 29.85 0.15 -2.20 16 7 C 0.52 15.94 7.31 87.66 0.64 16.58 16 8 O -0.52 -21.44 12.39 13.35 0.17 -21.27 16 9 N -1.04 -31.51 5.60 -173.54 -0.97 -32.48 16 10 S 2.60 114.28 5.03 -56.49 -0.28 113.99 16 11 O -0.98 -45.01 18.08 -127.65 -2.31 -47.32 16 12 O -0.99 -50.88 17.04 -120.72 -2.06 -52.93 16 13 C -0.42 -21.62 5.64 71.24 0.40 -21.22 16 14 C -0.57 -33.05 9.13 25.60 0.23 -32.82 16 15 H 0.06 3.71 7.71 -2.91 -0.02 3.69 16 16 C 0.03 1.50 5.46 84.66 0.46 1.96 16 17 N -0.91 -52.79 13.29 21.45 0.28 -52.50 16 18 Si 0.97 43.73 29.54 68.60 2.03 45.76 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 21 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 22 C -0.07 -1.75 2.40 -19.87 -0.05 -1.79 16 23 C -0.13 -2.63 8.67 22.27 0.19 -2.44 16 24 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 25 C -0.14 -3.37 10.05 22.27 0.22 -3.15 16 26 C -0.14 -3.99 10.05 22.27 0.22 -3.77 16 27 C -0.12 -3.53 8.70 22.27 0.19 -3.33 16 28 H 0.05 0.67 8.13 -2.39 -0.02 0.65 16 29 H 0.07 0.66 8.13 -2.39 -0.02 0.64 16 30 H 0.07 0.62 6.79 -2.39 -0.02 0.61 16 31 H 0.09 0.94 7.51 -2.39 -0.02 0.92 16 32 H 0.05 0.85 7.13 -2.38 -0.02 0.83 16 33 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.14 1.53 7.18 -2.39 -0.02 1.52 16 36 H 0.14 1.60 6.40 -2.38 -0.02 1.59 16 37 H 0.45 8.74 8.79 -96.74 -0.85 7.89 16 38 H 0.08 4.30 7.19 -2.39 -0.02 4.29 16 39 H 0.09 4.26 8.14 -2.39 -0.02 4.24 16 40 H 0.27 14.74 8.31 -92.71 -0.77 13.97 16 41 H 0.15 2.00 7.10 -2.91 -0.02 1.98 16 42 H 0.14 2.19 8.06 -2.91 -0.02 2.16 16 43 H 0.13 2.61 8.06 -2.91 -0.02 2.59 16 44 H 0.12 3.13 8.06 -2.91 -0.02 3.10 16 45 H 0.10 3.32 7.95 -2.91 -0.02 3.30 16 Total: -1.00 -82.21 380.39 1.13 -81.08 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.15 Total: 24.98 kcal Atomic # 6 Polarization: -63.42 SS G_CDS: 4.12 Total: -59.30 kcal Atomic # 7 Polarization: -84.30 SS G_CDS: -0.69 Total: -84.98 kcal Atomic # 8 Polarization: -117.33 SS G_CDS: -4.20 Total: -121.53 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 114.28 SS G_CDS: -0.28 Total: 113.99 kcal Total: -82.21 1.13 -81.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.000 kcal (2) G-P(sol) polarization free energy of solvation -82.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.212 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds