Wall clock time and date at job start Sat Apr 11 2020 05:38:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38234 * 119.99770 * 269.72838 * 3 2 1 5 5 C 1.38235 * 119.99933 * 179.78838 * 4 3 2 6 6 C 1.38240 * 119.99615 * 0.44078 * 5 4 3 7 7 C 1.50703 * 119.99825 * 179.83444 * 6 5 4 8 8 H 1.08999 * 109.47338 * 179.97438 * 7 6 5 9 9 C 1.53002 * 109.47040 * 59.97520 * 7 6 5 10 10 C 1.53006 * 109.47008 * 299.98123 * 7 6 5 11 11 C 1.50704 * 109.46855 * 185.00302 * 10 7 6 12 12 O 1.21277 * 120.00348 * 359.97438 * 11 10 7 13 13 N 1.34776 * 119.99751 * 179.97438 * 11 10 7 14 14 S 1.65602 * 120.00027 * 179.97438 * 13 11 10 15 15 O 1.42093 * 104.28018 * 181.07102 * 14 13 11 16 16 O 1.42110 * 104.27661 * 308.92691 * 14 13 11 17 17 C 1.81400 * 104.44783 * 64.99669 * 14 13 11 18 18 C 1.50701 * 109.46881 * 180.02562 * 17 14 13 19 19 H 1.08006 * 120.00054 * 359.97438 * 18 17 14 20 20 C 1.37877 * 120.00257 * 180.02562 * 18 17 14 21 21 N 1.31520 * 119.99432 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00513 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47025 * 59.99518 * 22 20 18 24 24 H 1.48501 * 109.47236 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47027 * 300.00012 * 22 20 18 26 26 C 1.38227 * 120.00231 * 359.81118 * 6 5 4 27 27 C 1.38232 * 119.99860 * 90.00280 * 3 2 1 28 28 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 29 29 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 30 30 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 32 32 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 33 33 H 1.08001 * 120.00330 * 359.97438 * 4 3 2 34 34 H 1.08002 * 120.00360 * 180.27290 * 5 4 3 35 35 H 1.09006 * 109.47111 * 60.00419 * 9 7 6 36 36 H 1.09004 * 109.47030 * 180.02562 * 9 7 6 37 37 H 1.08996 * 109.47378 * 299.99872 * 9 7 6 38 38 H 1.08999 * 109.46955 * 304.99332 * 10 7 6 39 39 H 1.08993 * 109.47689 * 64.99776 * 10 7 6 40 40 H 0.96997 * 120.00295 * 359.97438 * 13 11 10 41 41 H 1.09000 * 109.47381 * 299.99768 * 17 14 13 42 42 H 1.08990 * 109.47089 * 60.00327 * 17 14 13 43 43 H 0.97000 * 119.99816 * 180.02562 * 21 20 18 44 44 H 1.08002 * 120.00166 * 179.97438 * 26 6 5 45 45 H 1.07996 * 120.00605 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2680 2.0706 -1.1972 5 6 2.7246 3.3753 -1.1972 6 6 2.9541 4.0273 0.0000 7 6 3.4554 5.4485 0.0000 8 1 3.5755 5.7915 1.0276 9 6 2.4474 6.3448 -0.7223 10 6 4.8036 5.5137 -0.7205 11 6 5.3631 6.9090 -0.6140 12 8 4.7442 7.7669 -0.0208 13 7 6.5512 7.2035 -1.1781 14 16 7.1656 8.7369 -1.0617 15 8 8.3902 8.6792 -1.7801 16 8 6.1018 9.5744 -1.4933 17 6 7.4774 8.9662 0.7106 18 6 8.0447 10.3422 0.9468 19 1 8.2023 11.0117 0.1140 20 6 8.3635 10.7463 2.2259 21 7 8.1721 9.9308 3.2399 22 14 9.0673 12.4516 2.5188 23 1 8.0977 13.4744 2.0507 24 1 9.3225 12.6394 3.9696 25 1 10.3407 12.5971 1.7688 26 6 2.7234 3.3758 1.1971 27 6 2.2627 2.0725 1.1971 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 2.0926 1.5598 -2.1325 34 1 2.9045 3.8845 -2.1325 35 1 1.4869 6.2984 -0.2090 36 1 2.8103 7.3727 -0.7227 37 1 2.3273 6.0019 -1.7499 38 1 5.4959 4.8087 -0.2603 39 1 4.6673 5.2560 -1.7707 40 1 7.0463 6.5173 -1.6522 41 1 6.5426 8.8597 1.2608 42 1 8.1890 8.2156 1.0543 43 1 8.3960 10.2151 4.1399 44 1 2.9031 3.8851 2.1324 45 1 2.0824 1.5635 2.1325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835410970.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:54 Heat of formation + Delta-G solvation = -139.513401 kcal Electronic energy + Delta-G solvation = -26761.636392 eV Core-core repulsion = 22869.136971 eV Total energy + Delta-G solvation = -3892.499421 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.44732 -40.33495 -38.09539 -37.04162 -36.75072 -35.56750 -35.40630 -33.90820 -31.75384 -31.10497 -29.83856 -28.83351 -25.65347 -25.24796 -23.64684 -23.40401 -22.04500 -20.93199 -20.55499 -19.26685 -18.72766 -18.32898 -17.52833 -17.07260 -16.76886 -16.53968 -16.25192 -16.11426 -15.87326 -15.52745 -14.79628 -14.66696 -14.50677 -14.47961 -14.41274 -14.12815 -13.94314 -13.62106 -13.58556 -13.50000 -13.20401 -13.08979 -13.08113 -12.78951 -12.73906 -12.55808 -12.37098 -12.29366 -12.06283 -11.95134 -11.87725 -11.78564 -11.61145 -11.47452 -11.11433 -11.01183 -10.79502 -9.74466 -9.35575 -8.43841 -6.62925 -0.71649 0.47172 0.57831 1.13983 1.36118 1.40357 1.48263 1.66645 2.28956 2.77569 2.88391 2.90395 3.18123 3.43293 3.72937 3.88360 3.97550 4.05787 4.11771 4.20090 4.23277 4.39042 4.50274 4.55984 4.64318 4.65637 4.67048 4.69806 4.75555 4.76505 4.84743 5.02413 5.11123 5.12671 5.20684 5.22301 5.27668 5.31486 5.39850 5.42959 5.61688 5.67281 5.79126 5.80487 5.82843 6.19176 6.46361 6.58229 7.08633 8.68813 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.020834 B = 0.002318 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.653991 B =12077.534998 C =12774.048335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 C -0.093 4.093 4 C -0.122 4.122 5 C -0.114 4.114 6 C -0.084 4.084 7 C -0.038 4.038 8 H 0.071 0.929 9 C -0.151 4.151 10 C -0.126 4.126 11 C 0.527 3.473 12 O -0.527 6.527 13 N -1.043 6.043 14 S 2.599 3.401 15 O -0.982 6.982 16 O -0.985 6.985 17 C -0.421 4.421 18 C -0.569 4.569 19 H 0.067 0.933 20 C 0.024 3.976 21 N -0.908 5.908 22 Si 0.966 3.034 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.126 4.126 27 C -0.125 4.125 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.055 0.945 36 H 0.050 0.950 37 H 0.071 0.929 38 H 0.131 0.869 39 H 0.137 0.863 40 H 0.448 0.552 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.274 0.726 44 H 0.121 0.879 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.111 -22.650 -7.279 26.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.121 4.121 3 C -0.093 4.093 4 C -0.140 4.140 5 C -0.132 4.132 6 C -0.084 4.084 7 C -0.057 4.057 8 H 0.089 0.911 9 C -0.208 4.208 10 C -0.167 4.167 11 C 0.316 3.684 12 O -0.401 6.401 13 N -0.809 5.809 14 S 2.699 3.301 15 O -0.972 6.972 16 O -0.976 6.976 17 C -0.556 4.556 18 C -0.608 4.608 19 H 0.085 0.915 20 C -0.179 4.179 21 N -0.544 5.544 22 Si 0.788 3.212 23 H -0.190 1.190 24 H -0.193 1.193 25 H -0.182 1.182 26 C -0.144 4.144 27 C -0.143 4.143 28 H 0.067 0.933 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.090 0.910 38 H 0.149 0.851 39 H 0.154 0.846 40 H 0.287 0.713 41 H 0.097 0.903 42 H 0.103 0.897 43 H 0.083 0.917 44 H 0.139 0.861 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -12.443 -21.507 -7.432 25.935 hybrid contribution 0.618 0.551 0.936 1.250 sum -11.825 -20.956 -6.495 24.924 Atomic orbital electron populations 1.21737 0.94499 1.02269 1.01778 1.20578 0.96307 0.91686 1.03545 1.20174 0.98835 0.97174 0.93127 1.21262 0.99650 0.94813 0.98232 1.21193 0.99270 0.94910 0.97810 1.19724 1.00268 0.94581 0.93873 1.19868 0.93321 0.92032 1.00527 0.91072 1.21958 0.98504 0.99658 1.00651 1.22026 0.98027 0.90499 1.06137 1.21544 0.78747 0.93037 0.75101 1.90884 1.58041 1.50775 1.40377 1.54947 1.29628 1.33468 1.62892 1.05386 0.72811 0.72859 0.78995 1.93493 1.46342 1.85422 1.71990 1.93486 1.56340 1.66238 1.81487 1.27656 1.06275 1.05156 1.16519 1.20708 1.46587 0.98171 0.95354 0.91456 1.25882 0.94546 1.02393 0.95105 1.70033 1.46301 1.37979 1.00064 0.85478 0.79555 0.78026 0.78143 1.18973 1.19293 1.18195 1.21244 0.99973 0.95339 0.97873 1.21194 1.00038 0.94660 0.98426 0.93252 0.92850 0.91277 0.90603 0.90094 0.84400 0.84429 0.92599 0.93065 0.91036 0.85079 0.84555 0.71289 0.90318 0.89701 0.91662 0.86133 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.89 71.98 0.71 -0.72 16 2 C -0.08 -0.87 6.07 29.85 0.18 -0.69 16 3 C -0.09 -1.37 5.13 -19.87 -0.10 -1.47 16 4 C -0.12 -1.72 9.70 22.27 0.22 -1.50 16 5 C -0.11 -1.75 8.76 22.27 0.20 -1.56 16 6 C -0.08 -1.57 4.78 -19.87 -0.09 -1.66 16 7 C -0.04 -0.83 2.21 -11.54 -0.03 -0.86 16 8 H 0.07 1.83 7.69 -2.39 -0.02 1.81 16 9 C -0.15 -3.54 8.75 71.98 0.63 -2.91 16 10 C -0.13 -2.38 4.91 29.85 0.15 -2.24 16 11 C 0.53 15.88 7.28 87.66 0.64 16.52 16 12 O -0.53 -21.16 12.07 13.35 0.16 -20.99 16 13 N -1.04 -30.79 5.60 -173.53 -0.97 -31.76 16 14 S 2.60 111.49 5.03 -56.49 -0.28 111.21 16 15 O -0.98 -43.93 18.08 -127.65 -2.31 -46.24 16 16 O -0.99 -49.04 17.04 -120.72 -2.06 -51.10 16 17 C -0.42 -21.48 5.64 71.24 0.40 -21.08 16 18 C -0.57 -32.69 9.13 25.60 0.23 -32.46 16 19 H 0.07 3.76 7.71 -2.91 -0.02 3.74 16 20 C 0.02 1.37 5.46 84.65 0.46 1.83 16 21 N -0.91 -52.87 13.29 21.45 0.28 -52.59 16 22 Si 0.97 43.47 29.54 68.60 2.03 45.49 16 23 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 25 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 26 C -0.13 -2.39 9.67 22.27 0.22 -2.18 16 27 C -0.13 -2.07 9.70 22.27 0.22 -1.85 16 28 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 32 H 0.08 0.68 8.08 -2.39 -0.02 0.66 16 33 H 0.14 1.37 8.06 -2.91 -0.02 1.35 16 34 H 0.14 1.61 7.16 -2.91 -0.02 1.59 16 35 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.05 1.55 5.95 -2.39 -0.01 1.54 16 37 H 0.07 1.34 7.39 -2.39 -0.02 1.32 16 38 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.14 1.67 7.57 -2.39 -0.02 1.65 16 40 H 0.45 8.62 8.79 -96.75 -0.85 7.77 16 41 H 0.08 4.27 7.19 -2.39 -0.02 4.25 16 42 H 0.08 4.18 8.14 -2.40 -0.02 4.16 16 43 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 44 H 0.12 2.24 7.95 -2.91 -0.02 2.22 16 45 H 0.13 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -78.65 385.91 1.02 -77.63 By element: Atomic # 1 Polarization: 21.04 SS G_CDS: 0.15 Total: 21.19 kcal Atomic # 6 Polarization: -56.86 SS G_CDS: 4.03 Total: -52.83 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -0.69 Total: -84.35 kcal Atomic # 8 Polarization: -114.13 SS G_CDS: -4.20 Total: -118.33 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 111.49 SS G_CDS: -0.28 Total: 111.21 kcal Total: -78.65 1.02 -77.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835410970.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.887 kcal (2) G-P(sol) polarization free energy of solvation -78.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds