Wall clock time and date at job start Sat Apr 11 2020 05:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42899 * 109.47524 * 2 1 4 4 C 1.53003 * 109.47281 * 120.00117 * 2 1 3 5 5 C 1.52996 * 109.47627 * 180.02562 * 4 2 1 6 6 C 1.52999 * 109.46723 * 299.99853 * 5 4 2 7 7 N 1.46500 * 109.46840 * 179.97438 * 6 5 4 8 8 S 1.65604 * 120.00100 * 142.73869 * 7 6 5 9 9 O 1.42100 * 106.40364 * 180.77886 * 8 7 6 10 10 O 1.42102 * 106.40072 * 313.70285 * 8 7 6 11 11 C 1.76203 * 107.21558 * 67.24193 * 8 7 6 12 12 C 1.37642 * 120.12522 * 246.76884 * 11 8 7 13 13 C 1.38612 * 120.24522 * 179.97438 * 12 11 8 14 14 C 1.38658 * 120.50386 * 0.02562 * 13 12 11 15 15 C 1.37596 * 120.24923 * 0.02836 * 14 13 12 16 16 C 1.40691 * 120.12813 * 66.49888 * 11 8 7 17 17 C 1.41396 * 120.24441 * 359.97438 * 16 11 8 18 18 H 1.07998 * 120.00402 * 333.07993 * 17 16 11 19 19 C 1.39959 * 119.99873 * 153.07427 * 17 16 11 20 20 N 1.30818 * 119.99711 * 344.31808 * 19 17 16 21 21 Si 1.86800 * 119.99846 * 164.31863 * 19 17 16 22 22 H 1.48498 * 109.47194 * 64.99714 * 21 19 17 23 23 H 1.48496 * 109.46840 * 184.99926 * 21 19 17 24 24 H 1.48500 * 109.46959 * 305.00107 * 21 19 17 25 25 C 1.53000 * 109.47214 * 60.00203 * 6 5 4 26 26 C 1.52996 * 109.47110 * 299.99560 * 25 6 5 27 27 H 1.08996 * 109.47135 * 300.00078 * 1 2 3 28 28 H 1.08999 * 109.46870 * 60.00132 * 1 2 3 29 29 H 1.08996 * 109.47362 * 179.97438 * 1 2 3 30 30 H 0.96696 * 113.99656 * 300.00035 * 3 2 1 31 31 H 1.09005 * 109.46845 * 59.99523 * 4 2 1 32 32 H 1.09003 * 109.46521 * 300.00078 * 4 2 1 33 33 H 1.08999 * 109.47216 * 179.97438 * 5 4 2 34 34 H 1.08996 * 109.47306 * 59.99773 * 5 4 2 35 35 H 1.09000 * 109.47486 * 299.99623 * 6 5 4 36 36 H 0.97004 * 120.00636 * 322.73986 * 7 6 5 37 37 H 1.07991 * 119.87675 * 0.02562 * 12 11 8 38 38 H 1.08002 * 119.74740 * 180.02562 * 13 12 11 39 39 H 1.07997 * 119.87450 * 180.02562 * 14 13 12 40 40 H 1.07991 * 120.13021 * 179.97438 * 15 14 13 41 41 H 0.97005 * 119.99628 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.47215 * 59.99836 * 25 6 5 43 43 H 1.09003 * 109.46786 * 179.97438 * 25 6 5 44 44 H 1.09005 * 109.47515 * 300.00203 * 26 25 6 45 45 H 1.08999 * 109.47216 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5700 -0.7208 1.2496 6 6 4.0804 -1.4417 0.0004 7 7 5.5454 -1.4407 0.0005 8 16 6.3744 -2.7628 -0.5538 9 8 7.7552 -2.4610 -0.4076 10 8 5.7601 -3.8990 0.0387 11 6 6.0714 -2.8799 -2.2857 12 6 5.3506 -3.9380 -2.7909 13 6 5.1103 -4.0323 -4.1528 14 6 5.5923 -3.0647 -5.0211 15 6 6.3163 -1.9989 -4.5384 16 6 6.5606 -1.8892 -3.1567 17 6 7.2971 -0.7945 -2.6484 18 1 7.1369 -0.4602 -1.6340 19 6 8.2337 -0.1440 -3.4598 20 7 8.6546 -0.7143 -4.5593 21 14 8.8827 1.5386 -2.9727 22 1 9.6587 1.4239 -1.7119 23 1 9.7620 2.0606 -4.0495 24 1 7.7431 2.4689 -2.7696 25 6 3.5705 -0.7204 -1.2488 26 6 2.0406 -0.7209 -1.2492 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.7211 1.8652 -0.7650 31 1 1.6766 -1.7490 1.2492 32 1 1.6766 -0.2074 2.1392 33 1 3.9332 -1.2342 2.1399 34 1 3.9330 0.3070 1.2499 35 1 3.7175 -2.4695 0.0002 36 1 6.0300 -0.6656 0.3252 37 1 4.9700 -4.6971 -2.1237 38 1 4.5434 -4.8658 -4.5405 39 1 5.3988 -3.1481 -6.0804 40 1 6.6912 -1.2466 -5.2165 41 1 9.3041 -0.2636 -5.1215 42 1 3.9335 0.3073 -1.2486 43 1 3.9346 -1.2338 -2.1388 44 1 1.6775 -1.7487 -1.2495 45 1 1.6773 -0.2074 -2.1395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000866925212.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:10 Heat of formation + Delta-G solvation = -152.342925 kcal Electronic energy + Delta-G solvation = -29222.011053 eV Core-core repulsion = 25328.955303 eV Total energy + Delta-G solvation = -3893.055751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.52635 -39.36200 -38.05553 -37.08477 -36.66253 -35.67517 -33.95877 -32.06278 -31.69048 -31.35056 -31.07543 -27.34719 -26.52066 -23.78638 -23.33613 -22.94376 -22.23531 -20.96898 -20.14938 -19.49159 -18.50674 -17.95103 -17.36188 -17.06112 -17.02994 -16.20884 -16.04024 -15.77641 -15.53409 -15.08091 -14.94722 -14.67187 -14.46469 -14.35907 -13.99645 -13.65667 -13.38336 -13.27137 -13.20120 -13.01382 -12.96783 -12.86530 -12.81876 -12.76555 -12.73664 -12.50663 -12.40583 -12.16647 -12.08994 -11.92281 -11.64838 -11.43700 -11.22636 -11.14704 -10.96915 -10.60785 -10.13031 -9.78472 -9.43044 -8.81734 -6.58584 -0.14515 0.56327 0.99481 1.35776 1.46524 1.52690 2.15243 2.35739 2.63114 3.01375 3.42395 3.51009 3.77532 3.81029 3.85107 3.98911 4.12707 4.26555 4.33989 4.42607 4.50734 4.51593 4.52988 4.64629 4.73901 4.80940 4.90414 4.94867 4.97966 5.08201 5.12457 5.15940 5.17694 5.30934 5.33085 5.38747 5.40483 5.49160 5.53668 5.63442 5.73145 5.83281 6.02786 6.10382 6.25788 6.49243 6.68371 6.85556 7.00548 8.14869 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010694 B = 0.005076 C = 0.004643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.704376 B = 5514.520956 C = 6028.886516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.131 3.869 3 O -0.570 6.570 4 C -0.103 4.103 5 C -0.114 4.114 6 C 0.154 3.846 7 N -1.106 6.106 8 S 2.714 3.286 9 O -1.003 7.003 10 O -1.010 7.010 11 C -0.787 4.787 12 C -0.014 4.014 13 C -0.251 4.251 14 C -0.074 4.074 15 C -0.187 4.187 16 C 0.169 3.831 17 C -0.472 4.472 18 H 0.090 0.910 19 C 0.041 3.959 20 N -0.803 5.803 21 Si 0.971 3.029 22 H -0.263 1.263 23 H -0.262 1.262 24 H -0.245 1.245 25 C -0.130 4.130 26 C -0.138 4.138 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.072 0.928 30 H 0.385 0.615 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.418 0.582 37 H 0.120 0.880 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.111 0.889 41 H 0.296 0.704 42 H 0.067 0.933 43 H 0.048 0.952 44 H 0.076 0.924 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.047 5.181 5.296 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.090 3.910 3 O -0.378 6.378 4 C -0.141 4.141 5 C -0.153 4.153 6 C 0.047 3.953 7 N -0.865 5.865 8 S 2.811 3.189 9 O -0.993 6.993 10 O -1.001 7.001 11 C -0.882 4.882 12 C -0.033 4.033 13 C -0.271 4.271 14 C -0.093 4.093 15 C -0.207 4.207 16 C 0.164 3.836 17 C -0.499 4.499 18 H 0.108 0.892 19 C -0.177 4.177 20 N -0.427 5.427 21 Si 0.791 3.209 22 H -0.188 1.188 23 H -0.185 1.185 24 H -0.169 1.169 25 C -0.169 4.169 26 C -0.176 4.176 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.091 0.909 30 H 0.234 0.766 31 H 0.106 0.894 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.253 0.747 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.129 0.871 41 H 0.107 0.893 42 H 0.086 0.914 43 H 0.067 0.933 44 H 0.094 0.906 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.168 4.272 6.141 15.145 hybrid contribution 0.501 1.036 -1.372 1.791 sum -12.667 5.308 4.770 14.539 Atomic orbital electron populations 1.22417 0.94222 1.03380 1.02916 1.21206 0.93095 0.82247 0.94428 1.86514 1.77751 1.23412 1.50122 1.21566 0.94222 1.00953 0.97377 1.21699 0.96495 1.01081 0.96070 1.20886 0.77563 1.00248 0.96567 1.55408 1.15714 1.35040 1.80309 1.00466 0.71984 0.72317 0.74136 1.93489 1.33663 1.84675 1.87496 1.93413 1.78479 1.50742 1.77442 1.30053 1.27366 1.07961 1.22816 1.20532 0.92542 0.94099 0.96174 1.20833 1.10349 1.02767 0.93131 1.21204 0.95226 0.93895 0.98985 1.21502 1.02795 1.00329 0.96059 1.17196 0.85788 0.88585 0.91991 1.20080 1.17353 1.12160 1.00342 0.89217 1.26777 0.94857 1.02542 0.93558 1.69829 1.22796 1.38067 1.11992 0.85396 0.79478 0.76619 0.79449 1.18789 1.18548 1.16881 1.21901 0.96362 1.01382 0.97272 1.22199 0.94482 1.02139 0.98821 0.91591 0.91517 0.90864 0.76639 0.89435 0.89997 0.91030 0.90890 0.90200 0.74668 0.86258 0.85672 0.86176 0.87102 0.89338 0.91406 0.93290 0.90569 0.90683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.39 8.82 71.98 0.63 -1.75 16 2 C 0.13 2.44 0.98 -10.79 -0.01 2.43 16 3 O -0.57 -11.54 11.63 -148.98 -1.73 -13.27 16 4 C -0.10 -2.00 4.94 30.59 0.15 -1.85 16 5 C -0.11 -2.78 5.32 30.59 0.16 -2.61 16 6 C 0.15 4.65 2.82 44.99 0.13 4.77 16 7 N -1.11 -39.23 4.73 -169.39 -0.80 -40.03 16 8 S 2.71 121.18 4.96 -56.49 -0.28 120.90 16 9 O -1.00 -51.83 16.41 -128.00 -2.10 -53.93 16 10 O -1.01 -46.29 16.22 -128.00 -2.08 -48.36 16 11 C -0.79 -37.59 5.10 22.73 0.12 -37.48 16 12 C -0.01 -0.61 9.54 22.22 0.21 -0.40 16 13 C -0.25 -10.43 10.05 22.46 0.23 -10.20 16 14 C -0.07 -3.23 10.02 22.22 0.22 -3.01 16 15 C -0.19 -9.24 8.68 22.73 0.20 -9.04 16 16 C 0.17 8.62 5.52 -21.29 -0.12 8.50 16 17 C -0.47 -23.94 7.65 23.46 0.18 -23.76 16 18 H 0.09 4.31 5.72 -2.91 -0.02 4.29 16 19 C 0.04 2.00 5.17 85.26 0.44 2.44 16 20 N -0.80 -40.09 10.98 21.83 0.24 -39.85 16 21 Si 0.97 36.70 29.59 68.60 2.03 38.73 16 22 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 23 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 24 H -0.25 -8.67 7.11 99.48 0.71 -7.97 16 25 C -0.13 -3.87 5.38 30.59 0.16 -3.70 16 26 C -0.14 -3.04 4.92 30.59 0.15 -2.89 16 27 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 28 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.38 5.43 9.04 -74.06 -0.67 4.76 16 31 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 32 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.07 1.84 7.68 -2.39 -0.02 1.82 16 35 H 0.08 2.49 7.43 -2.39 -0.02 2.47 16 36 H 0.42 13.53 8.58 -96.74 -0.83 12.70 16 37 H 0.12 4.88 7.32 -2.92 -0.02 4.85 16 38 H 0.13 4.34 8.06 -2.91 -0.02 4.32 16 39 H 0.12 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 5.62 6.25 -2.92 -0.02 5.60 16 41 H 0.30 13.24 8.30 -92.70 -0.77 12.47 16 42 H 0.07 2.08 7.68 -2.39 -0.02 2.06 16 43 H 0.05 1.76 7.22 -2.39 -0.02 1.74 16 44 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 45 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 Total: -1.00 -66.26 367.21 -2.34 -68.60 By element: Atomic # 1 Polarization: 46.24 SS G_CDS: -0.48 Total: 45.76 kcal Atomic # 6 Polarization: -81.40 SS G_CDS: 2.86 Total: -78.55 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -0.56 Total: -79.88 kcal Atomic # 8 Polarization: -109.65 SS G_CDS: -5.91 Total: -115.56 kcal Atomic # 14 Polarization: 36.70 SS G_CDS: 2.03 Total: 38.73 kcal Atomic # 16 Polarization: 121.18 SS G_CDS: -0.28 Total: 120.90 kcal Total: -66.26 -2.34 -68.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000866925212.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.744 kcal (2) G-P(sol) polarization free energy of solvation -66.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds