Wall clock time and date at job start Sat Apr 11 2020 05:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52999 * 109.49877 * 2 1 4 4 C 1.53042 * 109.49804 * 120.06412 * 2 1 3 5 5 C 1.53034 * 109.54112 * 181.31760 * 4 2 1 6 6 H 1.09004 * 109.50150 * 58.58121 * 5 4 2 7 7 O 1.42894 * 109.52931 * 178.66854 * 5 4 2 8 8 C 1.53200 * 109.30920 * 298.63488 * 5 4 2 9 9 N 1.46921 * 108.89338 * 54.56526 * 8 5 4 10 10 S 1.65603 * 120.63063 * 126.46228 * 9 8 5 11 11 O 1.42105 * 106.39954 * 203.53896 * 10 9 8 12 12 O 1.42096 * 106.40141 * 336.45714 * 10 9 8 13 13 C 1.76197 * 107.21792 * 89.99852 * 10 9 8 14 14 C 1.38657 * 119.87390 * 269.72372 * 13 10 9 15 15 C 1.38617 * 120.49671 * 179.72366 * 14 13 10 16 16 C 1.37634 * 120.25023 * 0.55196 * 15 14 13 17 17 C 1.40699 * 119.74544 * 359.72930 * 16 15 14 18 18 C 1.41396 * 120.24481 * 179.97438 * 17 16 15 19 19 H 1.07999 * 119.99727 * 204.40403 * 18 17 16 20 20 C 1.39948 * 120.00060 * 24.40139 * 18 17 16 21 21 N 1.30824 * 120.00082 * 17.86519 * 20 18 17 22 22 Si 1.86799 * 119.99925 * 197.86460 * 20 18 17 23 23 H 1.48495 * 109.47351 * 0.02562 * 22 20 18 24 24 H 1.48494 * 109.47073 * 120.00259 * 22 20 18 25 25 H 1.48500 * 109.47061 * 240.00102 * 22 20 18 26 26 C 1.37591 * 119.87472 * 90.00150 * 13 10 9 27 27 C 1.46962 * 118.71461 * 306.63752 * 9 8 5 28 28 H 1.09003 * 109.47462 * 299.93841 * 1 2 3 29 29 H 1.09005 * 109.47220 * 59.93468 * 1 2 3 30 30 H 1.09001 * 109.47431 * 179.97438 * 1 2 3 31 31 H 1.09005 * 109.47420 * 180.02562 * 3 2 1 32 32 H 1.08998 * 109.47362 * 300.06207 * 3 2 1 33 33 H 1.09004 * 109.47284 * 60.06577 * 3 2 1 34 34 H 1.09005 * 109.46123 * 61.29089 * 4 2 1 35 35 H 1.09004 * 109.46132 * 301.33602 * 4 2 1 36 36 H 0.96698 * 114.00581 * 179.85289 * 7 5 4 37 37 H 1.09001 * 109.58434 * 174.42384 * 8 5 4 38 38 H 1.08996 * 109.58363 * 294.69974 * 8 5 4 39 39 H 1.08001 * 119.75139 * 359.97438 * 14 13 10 40 40 H 1.08000 * 119.87343 * 180.27896 * 15 14 13 41 41 H 1.07997 * 120.12678 * 179.74889 * 16 15 14 42 42 H 0.96998 * 120.00334 * 180.02562 * 21 20 18 43 43 H 1.07998 * 120.13361 * 0.02562 * 26 13 10 44 44 H 1.08993 * 109.46992 * 293.57487 * 27 9 8 45 45 H 1.09002 * 109.71337 * 173.28372 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 3.5707 -0.6947 1.2663 6 1 3.9159 0.3392 1.2540 7 8 4.0467 -1.3424 2.4477 8 6 4.1052 -1.4268 0.0312 9 7 3.5048 -0.8326 -1.1709 10 16 4.4592 -0.2915 -2.4114 11 8 3.6929 0.6773 -3.1140 12 8 5.7329 -0.0139 -1.8459 13 6 4.6902 -1.6421 -3.5191 14 6 5.7653 -2.5006 -3.3467 15 6 5.9561 -3.5706 -4.2070 16 6 5.0845 -3.7854 -5.2504 17 6 3.9934 -2.9172 -5.4385 18 6 3.0918 -3.1277 -6.5071 19 1 2.5170 -2.3017 -6.8993 20 6 2.9442 -4.4062 -7.0567 21 7 3.3499 -5.4559 -6.3894 22 14 2.1680 -4.6142 -8.7430 23 1 1.7974 -3.2822 -9.2850 24 1 3.1385 -5.2676 -9.6575 25 1 0.9515 -5.4580 -8.6273 26 6 3.8063 -1.8375 -4.5552 27 6 2.0413 -0.7242 -1.2494 28 1 -0.3634 0.5129 0.8905 29 1 -0.3634 0.5149 -0.8894 30 1 -0.3634 -1.0277 -0.0005 31 1 3.1307 1.4418 -0.0005 32 1 1.6767 1.9566 -0.8894 33 1 1.6785 1.9559 0.8906 34 1 1.6966 -1.7569 1.2359 35 1 1.6581 -0.2239 2.1390 36 1 5.0105 -1.3635 2.5237 37 1 5.1895 -1.3247 -0.0133 38 1 3.8396 -2.4823 0.0888 39 1 6.4569 -2.3368 -2.5335 40 1 6.7944 -4.2356 -4.0607 41 1 5.2374 -4.6172 -5.9219 42 1 3.2480 -6.3420 -6.7705 43 1 2.9723 -1.1648 -4.6907 44 1 1.6052 -1.7219 -1.2975 45 1 1.7615 -0.1598 -2.1389 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867823469.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:18 Heat of formation + Delta-G solvation = -137.258704 kcal Electronic energy + Delta-G solvation = -28602.275263 eV Core-core repulsion = 24709.873613 eV Total energy + Delta-G solvation = -3892.401650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66314 -39.47127 -38.41830 -37.24498 -36.96282 -35.69420 -35.12172 -31.94398 -31.62429 -31.26473 -28.22289 -27.85668 -27.36269 -25.66904 -23.64996 -22.97142 -22.76879 -20.45657 -19.94806 -19.23017 -18.67389 -18.10191 -17.76304 -17.24821 -16.89258 -16.55746 -16.09163 -15.93695 -15.44351 -15.25035 -15.10903 -15.03366 -14.76939 -14.33535 -14.18864 -13.72794 -13.51060 -13.38532 -13.31707 -13.21265 -13.11114 -13.07163 -12.89181 -12.82902 -12.76155 -12.64056 -12.57921 -12.36805 -12.22096 -11.83258 -11.57823 -11.56868 -11.39044 -11.33695 -11.16582 -11.02318 -10.00670 -9.80046 -9.59038 -8.75409 -6.47476 -0.61041 0.37036 0.81211 1.36877 1.43454 1.52019 1.96645 2.16628 2.53540 2.69614 3.14944 3.32317 3.48764 3.69997 3.75651 3.86728 3.94489 4.13676 4.22350 4.26931 4.31456 4.39866 4.51580 4.65843 4.75927 4.78450 4.80835 4.86798 4.88232 4.91376 4.98781 5.02239 5.04150 5.15181 5.16199 5.17825 5.28564 5.37393 5.44308 5.45018 5.52639 5.58439 5.85625 5.91363 6.07382 6.50087 6.77411 6.82024 6.85224 8.22694 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015066 B = 0.003643 C = 0.003385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.992293 B = 7684.972856 C = 8269.301791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.066 4.066 3 C -0.150 4.150 4 C -0.097 4.097 5 C 0.099 3.901 6 H 0.066 0.934 7 O -0.572 6.572 8 C 0.083 3.917 9 N -0.985 5.985 10 S 2.710 3.290 11 O -0.984 6.984 12 O -0.983 6.983 13 C -0.641 4.641 14 C -0.152 4.152 15 C -0.122 4.122 16 C -0.142 4.142 17 C 0.063 3.937 18 C -0.496 4.496 19 H 0.079 0.921 20 C 0.039 3.961 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.259 1.259 24 H -0.263 1.263 25 H -0.263 1.263 26 C -0.145 4.145 27 C 0.116 3.884 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.063 0.937 31 H 0.042 0.958 32 H 0.056 0.944 33 H 0.078 0.922 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.396 0.604 37 H 0.096 0.904 38 H 0.080 0.920 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.292 0.708 43 H 0.110 0.890 44 H 0.077 0.923 45 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.346 5.480 13.226 14.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.068 4.068 3 C -0.207 4.207 4 C -0.134 4.134 5 C 0.038 3.962 6 H 0.084 0.916 7 O -0.379 6.379 8 C -0.043 4.043 9 N -0.825 5.825 10 S 2.805 3.195 11 O -0.974 6.974 12 O -0.973 6.973 13 C -0.730 4.730 14 C -0.173 4.173 15 C -0.141 4.141 16 C -0.162 4.162 17 C 0.060 3.940 18 C -0.525 4.525 19 H 0.097 0.903 20 C -0.177 4.177 21 N -0.446 5.446 22 Si 0.803 3.197 23 H -0.183 1.183 24 H -0.187 1.187 25 H -0.188 1.188 26 C -0.166 4.166 27 C -0.009 4.009 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.246 0.754 37 H 0.114 0.886 38 H 0.099 0.901 39 H 0.148 0.852 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.128 0.872 44 H 0.096 0.904 45 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.620 5.988 13.257 14.990 hybrid contribution 0.472 -1.083 -1.452 1.872 sum -3.149 4.905 11.805 13.165 Atomic orbital electron populations 1.21798 0.91655 1.02896 1.03124 1.20812 0.97178 0.95401 0.93452 1.22001 1.00525 0.95256 1.02951 1.21491 0.92544 1.01642 0.97730 1.22082 0.95811 0.95242 0.83070 0.91623 1.86469 1.28757 1.81306 1.41377 1.22345 0.99008 0.98742 0.84166 1.57390 1.16643 1.78245 1.30227 1.01100 0.72319 0.73581 0.72480 1.93488 1.71764 1.58329 1.73850 1.93469 1.41443 1.84242 1.78145 1.30355 1.05781 1.21393 1.15469 1.20445 0.98155 0.96413 1.02262 1.21147 0.99354 0.97728 0.95899 1.21649 0.94378 1.01179 0.98994 1.18053 0.92290 0.91562 0.92084 1.19886 1.21795 0.95798 1.15049 0.90273 1.26737 0.94316 0.94472 1.02147 1.69814 1.36790 1.00290 1.37698 0.85147 0.78558 0.79492 0.76525 1.18295 1.18720 1.18751 1.20843 0.99166 1.00943 0.95679 1.21824 0.77536 1.01763 0.99784 0.90558 0.91963 0.91751 0.93918 0.92480 0.90296 0.90989 0.89779 0.75405 0.88599 0.90126 0.85198 0.85506 0.86823 0.89684 0.87153 0.90437 0.89485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 8.48 71.98 0.61 -1.59 16 2 C -0.07 -1.34 0.77 -52.11 -0.04 -1.38 16 3 C -0.15 -3.12 7.99 71.98 0.57 -2.54 16 4 C -0.10 -1.85 4.36 30.62 0.13 -1.72 16 5 C 0.10 2.03 3.28 30.67 0.10 2.13 16 6 H 0.07 1.34 6.34 -2.39 -0.02 1.33 16 7 O -0.57 -10.77 13.32 -148.98 -1.99 -12.76 16 8 C 0.08 2.01 6.10 86.37 0.53 2.54 16 9 N -0.99 -28.74 2.75 -512.99 -1.41 -30.15 16 10 S 2.71 100.89 5.73 -56.49 -0.32 100.56 16 11 O -0.98 -40.52 15.86 -128.00 -2.03 -42.55 16 12 O -0.98 -38.08 15.85 -128.00 -2.03 -40.11 16 13 C -0.64 -28.24 5.97 22.22 0.13 -28.11 16 14 C -0.15 -6.52 9.53 22.46 0.21 -6.31 16 15 C -0.12 -5.47 10.02 22.22 0.22 -5.25 16 16 C -0.14 -7.25 8.70 22.73 0.20 -7.05 16 17 C 0.06 3.37 5.58 -21.29 -0.12 3.25 16 18 C -0.50 -26.17 9.05 23.46 0.21 -25.96 16 19 H 0.08 4.06 7.91 -2.91 -0.02 4.04 16 20 C 0.04 1.90 5.14 85.26 0.44 2.33 16 21 N -0.82 -40.85 10.95 21.83 0.24 -40.61 16 22 Si 0.98 36.78 29.60 68.60 2.03 38.81 16 23 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.26 -9.43 7.11 99.48 0.71 -8.72 16 25 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 26 C -0.15 -7.16 9.26 22.73 0.21 -6.95 16 27 C 0.12 3.03 5.15 86.36 0.44 3.47 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.04 0.98 5.98 -2.38 -0.01 0.97 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.40 4.44 9.08 -74.06 -0.67 3.76 16 37 H 0.10 2.27 6.92 -2.39 -0.02 2.26 16 38 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.13 4.83 7.59 -2.91 -0.02 4.81 16 40 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.11 5.93 6.15 -2.91 -0.02 5.91 16 42 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 43 H 0.11 5.26 7.60 -2.91 -0.02 5.24 16 44 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 45 H 0.09 2.48 6.93 -2.39 -0.02 2.46 16 Total: -1.00 -65.11 368.88 -1.31 -66.42 By element: Atomic # 1 Polarization: 33.18 SS G_CDS: 0.33 Total: 33.52 kcal Atomic # 6 Polarization: -76.99 SS G_CDS: 3.86 Total: -73.13 kcal Atomic # 7 Polarization: -69.59 SS G_CDS: -1.17 Total: -70.76 kcal Atomic # 8 Polarization: -89.37 SS G_CDS: -6.04 Total: -95.42 kcal Atomic # 14 Polarization: 36.78 SS G_CDS: 2.03 Total: 38.81 kcal Atomic # 16 Polarization: 100.89 SS G_CDS: -0.32 Total: 100.56 kcal Total: -65.11 -1.31 -66.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867823469.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.837 kcal (2) G-P(sol) polarization free energy of solvation -65.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds