Wall clock time and date at job start Sat Apr 11 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.49887 * 2 1 4 4 C 1.53042 * 109.49546 * 120.06405 * 2 1 3 5 5 C 1.53038 * 109.53871 * 58.58442 * 4 2 1 6 6 H 1.09004 * 109.49631 * 301.41476 * 5 4 2 7 7 O 1.42900 * 109.49754 * 181.35184 * 5 4 2 8 8 C 1.53186 * 109.31212 * 61.36419 * 5 4 2 9 9 N 1.46923 * 108.78060 * 305.36765 * 8 5 4 10 10 S 1.65597 * 120.63337 * 233.58903 * 9 8 5 11 11 O 1.42104 * 106.40185 * 23.55502 * 10 9 8 12 12 O 1.42098 * 106.40355 * 156.47565 * 10 9 8 13 13 C 1.76198 * 107.21891 * 270.01875 * 10 9 8 14 14 C 1.38663 * 119.87509 * 269.72918 * 13 10 9 15 15 C 1.38608 * 120.50069 * 179.71924 * 14 13 10 16 16 C 1.37640 * 120.24784 * 0.55132 * 15 14 13 17 17 C 1.40694 * 119.74458 * 359.72123 * 16 15 14 18 18 C 1.41397 * 120.24077 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99813 * 204.37725 * 18 17 16 20 20 C 1.39942 * 120.00249 * 24.38558 * 18 17 16 21 21 N 1.30817 * 120.00164 * 17.86127 * 20 18 17 22 22 Si 1.86807 * 119.99786 * 197.86592 * 20 18 17 23 23 H 1.48498 * 109.46943 * 60.00142 * 22 20 18 24 24 H 1.48505 * 109.46575 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47191 * 299.99547 * 22 20 18 26 26 C 1.37596 * 119.87746 * 89.99600 * 13 10 9 27 27 C 1.46927 * 118.73690 * 53.60249 * 9 8 5 28 28 H 1.09009 * 109.47208 * 299.94037 * 1 2 3 29 29 H 1.09005 * 109.47015 * 59.93543 * 1 2 3 30 30 H 1.09001 * 109.47613 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46948 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47036 * 300.06240 * 3 2 1 33 33 H 1.09000 * 109.47065 * 60.06736 * 3 2 1 34 34 H 1.09005 * 109.45977 * 298.56513 * 4 2 1 35 35 H 1.08997 * 109.45001 * 178.60195 * 4 2 1 36 36 H 0.96707 * 114.00000 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.58957 * 65.15615 * 8 5 4 38 38 H 1.09003 * 109.58977 * 185.57580 * 8 5 4 39 39 H 1.07993 * 119.74471 * 359.97438 * 14 13 10 40 40 H 1.08003 * 119.87750 * 180.25003 * 15 14 13 41 41 H 1.08004 * 120.12343 * 179.75026 * 16 15 14 42 42 H 0.97002 * 120.00122 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.12939 * 359.97438 * 26 13 10 44 44 H 1.09000 * 109.58788 * 186.60861 * 27 9 8 45 45 H 1.08998 * 109.70028 * 66.25741 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 1.5029 -2.1554 1.2667 6 1 0.4131 -2.1350 1.2547 7 8 1.9545 -2.8195 2.4486 8 6 2.0138 -2.9040 0.0317 9 7 1.6515 -2.1385 -1.1689 10 16 0.8199 -2.8563 -2.4081 11 8 0.1339 -3.9646 -1.8420 12 8 0.1614 -1.8099 -3.1085 13 6 2.0133 -3.5245 -3.5189 14 6 2.4902 -2.7519 -4.5669 15 6 3.4334 -3.2625 -5.4450 16 6 3.8987 -4.5487 -5.2916 17 6 3.4177 -5.3438 -4.2352 18 6 3.8890 -6.6663 -4.0676 19 1 3.2824 -7.3940 -3.5491 20 6 5.1414 -7.0323 -4.5734 21 7 6.0171 -6.1107 -4.8815 22 14 5.5626 -8.8370 -4.8086 23 1 4.5992 -9.4505 -5.7576 24 1 6.9386 -8.9570 -5.3541 25 1 5.4848 -9.5379 -3.5017 26 6 2.4644 -4.8129 -3.3464 27 6 2.0413 -0.7242 -1.2493 28 1 -0.3634 0.5129 0.8906 29 1 -0.3633 0.5149 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1307 1.4417 -0.0005 32 1 1.6767 1.9565 -0.8894 33 1 1.6785 1.9559 0.8906 34 1 1.6986 -0.1952 2.1390 35 1 3.1304 -0.7441 1.2354 36 1 1.6509 -3.7344 2.5261 37 1 3.0977 -3.0044 0.0877 38 1 1.5552 -3.8918 -0.0125 39 1 2.1271 -1.7433 -4.6975 40 1 3.8009 -2.6505 -6.2554 41 1 4.6306 -4.9460 -5.9794 42 1 6.8851 -6.3644 -5.2325 43 1 2.0887 -5.4144 -2.5318 44 1 1.6008 -0.2737 -2.1387 45 1 3.1272 -0.6446 -1.2991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867823470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:21 Heat of formation + Delta-G solvation = -117.074270 kcal Electronic energy + Delta-G solvation = -28593.261345 eV Core-core repulsion = 24701.734958 eV Total energy + Delta-G solvation = -3891.526387 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.71018 -37.66684 -36.88391 -36.30551 -35.37075 -34.06049 -33.87544 -30.33504 -30.10819 -29.81691 -27.41087 -26.94720 -25.51449 -24.57141 -22.00301 -21.85739 -21.01204 -19.13615 -18.58954 -17.89268 -17.33081 -17.07197 -15.99742 -15.93368 -15.36006 -15.06957 -14.74513 -14.59107 -14.50043 -14.08383 -13.79595 -13.50771 -13.40174 -13.20369 -12.61217 -12.31947 -12.30130 -12.29621 -11.94472 -11.81933 -11.78173 -11.67615 -11.59014 -11.45616 -11.39003 -11.36383 -11.04921 -10.93633 -10.91136 -10.68761 -10.65420 -10.33927 -10.16414 -9.80861 -9.62687 -9.37275 -8.75742 -8.06173 -7.73895 -6.95693 -4.56861 0.90027 2.15702 2.61147 2.97571 2.99557 3.06157 3.36501 3.80280 4.02207 4.20810 4.38685 4.55805 4.63800 4.76577 4.82726 4.96346 5.09638 5.19741 5.23928 5.38708 5.40019 5.54016 5.59033 5.70308 5.75839 5.80880 5.85328 5.90082 5.97810 6.01402 6.03750 6.10761 6.13956 6.27912 6.32993 6.58665 6.62214 6.73542 6.88618 7.01341 7.18570 7.34661 7.55097 7.69560 7.77260 7.91065 8.36801 8.63743 8.68493 9.99703 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.003605 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.581361 B = 7766.009273 C = 8366.223394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.073 4.073 3 C -0.139 4.139 4 C -0.098 4.098 5 C 0.093 3.907 6 H 0.063 0.937 7 O -0.566 6.566 8 C 0.089 3.911 9 N -0.994 5.994 10 S 2.686 3.314 11 O -0.971 6.971 12 O -0.970 6.970 13 C -0.632 4.632 14 C -0.148 4.148 15 C -0.120 4.120 16 C -0.118 4.118 17 C 0.093 3.907 18 C -0.461 4.461 19 H 0.083 0.917 20 C 0.076 3.924 21 N -0.794 5.794 22 Si 0.912 3.088 23 H -0.262 1.262 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.126 4.126 27 C 0.127 3.873 28 H 0.056 0.944 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.381 0.619 37 H 0.078 0.922 38 H 0.095 0.905 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.110 0.890 44 H 0.096 0.904 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.001 9.325 8.918 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.075 4.075 3 C -0.196 4.196 4 C -0.136 4.136 5 C 0.032 3.968 6 H 0.081 0.919 7 O -0.371 6.371 8 C -0.037 4.037 9 N -0.831 5.831 10 S 2.784 3.216 11 O -0.961 6.961 12 O -0.960 6.960 13 C -0.724 4.724 14 C -0.170 4.170 15 C -0.140 4.140 16 C -0.138 4.138 17 C 0.089 3.911 18 C -0.490 4.490 19 H 0.101 0.899 20 C -0.142 4.142 21 N -0.419 5.419 22 Si 0.736 3.264 23 H -0.187 1.187 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.148 4.148 27 C 0.001 3.999 28 H 0.076 0.924 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.228 0.772 37 H 0.096 0.904 38 H 0.113 0.887 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.115 0.885 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -4.394 9.900 8.898 14.018 hybrid contribution 0.892 -1.573 -0.586 1.900 sum -3.502 8.327 8.313 12.276 Atomic orbital electron populations 1.21962 0.94164 1.02142 1.02165 1.20847 0.96393 0.95465 0.94819 1.21797 1.01264 0.94336 1.02252 1.21484 1.01436 0.93177 0.97469 1.22175 0.97869 0.92897 0.83827 0.91897 1.86487 1.78044 1.30490 1.42040 1.22125 1.01882 0.95422 0.84271 1.57651 1.75533 1.18711 1.31210 1.01813 0.74196 0.72876 0.72751 1.93507 1.71391 1.53148 1.78072 1.93498 1.72494 1.57011 1.73013 1.29791 1.21891 1.05627 1.15099 1.20062 1.00985 0.98368 0.97536 1.20812 0.97861 0.96448 0.98844 1.21645 1.00776 0.93579 0.97802 1.17672 0.90306 0.93278 0.89843 1.19590 1.01346 0.95814 1.32294 0.89935 1.25930 0.95628 1.00075 0.92605 1.69767 1.05539 1.35464 1.31080 0.86297 0.78118 0.82035 0.79966 1.18657 1.20209 1.18784 1.20749 1.01384 0.92655 1.00003 1.21546 1.00394 0.79395 0.98545 0.92448 0.91788 0.92615 0.92215 0.91967 0.92260 0.91138 0.90896 0.77187 0.90366 0.88664 0.87653 0.88340 0.85713 0.90485 0.87204 0.88541 0.91016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 7.98 37.16 0.30 -1.32 16 2 C -0.07 -0.78 0.77 -154.39 -0.12 -0.90 16 3 C -0.14 -1.19 8.48 37.16 0.32 -0.87 16 4 C -0.10 -1.06 4.36 -26.69 -0.12 -1.18 16 5 C 0.09 1.09 3.28 -26.62 -0.09 1.00 16 6 H 0.06 0.74 6.33 -51.93 -0.33 0.41 16 7 O -0.57 -6.40 13.32 -35.23 -0.47 -6.87 16 8 C 0.09 1.21 6.10 -3.72 -0.02 1.19 16 9 N -0.99 -14.93 2.73 -113.53 -0.31 -15.24 16 10 S 2.69 50.48 5.72 -107.50 -0.62 49.87 16 11 O -0.97 -19.98 15.86 -57.17 -0.91 -20.88 16 12 O -0.97 -19.24 15.85 -57.17 -0.91 -20.15 16 13 C -0.63 -13.83 5.97 -39.66 -0.24 -14.07 16 14 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 15 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 16 C -0.12 -2.93 8.70 -38.87 -0.34 -3.27 16 17 C 0.09 2.38 5.58 -106.83 -0.60 1.78 16 18 C -0.46 -11.73 9.05 -37.74 -0.34 -12.08 16 19 H 0.08 2.01 7.91 -52.49 -0.42 1.60 16 20 C 0.08 1.81 5.14 -17.35 -0.09 1.73 16 21 N -0.79 -19.42 10.95 55.55 0.61 -18.82 16 22 Si 0.91 17.87 29.60 -169.99 -5.03 12.84 16 23 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 24 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.26 -5.10 7.11 56.52 0.40 -4.70 16 26 C -0.13 -3.02 9.26 -38.87 -0.36 -3.38 16 27 C 0.13 1.63 5.16 -3.71 -0.02 1.61 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.05 0.68 5.97 -51.93 -0.31 0.37 16 31 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.38 2.92 9.08 45.56 0.41 3.33 16 37 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.10 1.31 6.92 -51.93 -0.36 0.95 16 39 H 0.11 2.05 7.59 -52.49 -0.40 1.65 16 40 H 0.10 1.92 8.06 -52.48 -0.42 1.49 16 41 H 0.13 3.14 6.16 -52.48 -0.32 2.81 16 42 H 0.28 6.33 8.30 -40.82 -0.34 5.99 16 43 H 0.11 2.50 7.60 -52.48 -0.40 2.10 16 44 H 0.10 1.27 6.92 -51.93 -0.36 0.91 16 45 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 368.85 15.07 5.56 5.56 Total: -1.00 -30.12 368.85 -10.40 -40.52 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -5.84 Total: 9.63 kcal Atomic # 6 Polarization: -33.96 SS G_CDS: -2.49 Total: -36.45 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.30 Total: -34.06 kcal Atomic # 8 Polarization: -45.62 SS G_CDS: -2.28 Total: -47.90 kcal Atomic # 14 Polarization: 17.87 SS G_CDS: -5.03 Total: 12.84 kcal Atomic # 16 Polarization: 50.48 SS G_CDS: -0.62 Total: 49.87 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -30.12 -10.40 -40.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867823470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.559 kcal (2) G-P(sol) polarization free energy of solvation -30.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds