Wall clock time and date at job start Sat Apr 11 2020 05:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.49887 * 2 1 4 4 C 1.53042 * 109.49546 * 120.06405 * 2 1 3 5 5 C 1.53038 * 109.53871 * 58.58442 * 4 2 1 6 6 H 1.09004 * 109.49631 * 301.41476 * 5 4 2 7 7 O 1.42900 * 109.49754 * 181.35184 * 5 4 2 8 8 C 1.53186 * 109.31212 * 61.36419 * 5 4 2 9 9 N 1.46923 * 108.78060 * 305.36765 * 8 5 4 10 10 S 1.65597 * 120.63337 * 233.58903 * 9 8 5 11 11 O 1.42104 * 106.40185 * 23.55502 * 10 9 8 12 12 O 1.42098 * 106.40355 * 156.47565 * 10 9 8 13 13 C 1.76198 * 107.21891 * 270.01875 * 10 9 8 14 14 C 1.38663 * 119.87509 * 269.72918 * 13 10 9 15 15 C 1.38608 * 120.50069 * 179.71924 * 14 13 10 16 16 C 1.37640 * 120.24784 * 0.55132 * 15 14 13 17 17 C 1.40694 * 119.74458 * 359.72123 * 16 15 14 18 18 C 1.41397 * 120.24077 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99813 * 204.37725 * 18 17 16 20 20 C 1.39942 * 120.00249 * 24.38558 * 18 17 16 21 21 N 1.30817 * 120.00164 * 17.86127 * 20 18 17 22 22 Si 1.86807 * 119.99786 * 197.86592 * 20 18 17 23 23 H 1.48498 * 109.46943 * 60.00142 * 22 20 18 24 24 H 1.48505 * 109.46575 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.47191 * 299.99547 * 22 20 18 26 26 C 1.37596 * 119.87746 * 89.99600 * 13 10 9 27 27 C 1.46927 * 118.73690 * 53.60249 * 9 8 5 28 28 H 1.09009 * 109.47208 * 299.94037 * 1 2 3 29 29 H 1.09005 * 109.47015 * 59.93543 * 1 2 3 30 30 H 1.09001 * 109.47613 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46948 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.47036 * 300.06240 * 3 2 1 33 33 H 1.09000 * 109.47065 * 60.06736 * 3 2 1 34 34 H 1.09005 * 109.45977 * 298.56513 * 4 2 1 35 35 H 1.08997 * 109.45001 * 178.60195 * 4 2 1 36 36 H 0.96707 * 114.00000 * 180.02562 * 7 5 4 37 37 H 1.09001 * 109.58957 * 65.15615 * 8 5 4 38 38 H 1.09003 * 109.58977 * 185.57580 * 8 5 4 39 39 H 1.07993 * 119.74471 * 359.97438 * 14 13 10 40 40 H 1.08003 * 119.87750 * 180.25003 * 15 14 13 41 41 H 1.08004 * 120.12343 * 179.75026 * 16 15 14 42 42 H 0.97002 * 120.00122 * 180.02562 * 21 20 18 43 43 H 1.08004 * 120.12939 * 359.97438 * 26 13 10 44 44 H 1.09000 * 109.58788 * 186.60861 * 27 9 8 45 45 H 1.08998 * 109.70028 * 66.25741 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0406 1.4422 0.0000 4 6 2.0407 -0.7227 1.2486 5 6 1.5029 -2.1554 1.2667 6 1 0.4131 -2.1350 1.2547 7 8 1.9545 -2.8195 2.4486 8 6 2.0138 -2.9040 0.0317 9 7 1.6515 -2.1385 -1.1689 10 16 0.8199 -2.8563 -2.4081 11 8 0.1339 -3.9646 -1.8420 12 8 0.1614 -1.8099 -3.1085 13 6 2.0133 -3.5245 -3.5189 14 6 2.4902 -2.7519 -4.5669 15 6 3.4334 -3.2625 -5.4450 16 6 3.8987 -4.5487 -5.2916 17 6 3.4177 -5.3438 -4.2352 18 6 3.8890 -6.6663 -4.0676 19 1 3.2824 -7.3940 -3.5491 20 6 5.1414 -7.0323 -4.5734 21 7 6.0171 -6.1107 -4.8815 22 14 5.5626 -8.8370 -4.8086 23 1 4.5992 -9.4505 -5.7576 24 1 6.9386 -8.9570 -5.3541 25 1 5.4848 -9.5379 -3.5017 26 6 2.4644 -4.8129 -3.3464 27 6 2.0413 -0.7242 -1.2493 28 1 -0.3634 0.5129 0.8906 29 1 -0.3633 0.5149 -0.8895 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1307 1.4417 -0.0005 32 1 1.6767 1.9565 -0.8894 33 1 1.6785 1.9559 0.8906 34 1 1.6986 -0.1952 2.1390 35 1 3.1304 -0.7441 1.2354 36 1 1.6509 -3.7344 2.5261 37 1 3.0977 -3.0044 0.0877 38 1 1.5552 -3.8918 -0.0125 39 1 2.1271 -1.7433 -4.6975 40 1 3.8009 -2.6505 -6.2554 41 1 4.6306 -4.9460 -5.9794 42 1 6.8851 -6.3644 -5.2325 43 1 2.0887 -5.4144 -2.5318 44 1 1.6008 -0.2737 -2.1387 45 1 3.1272 -0.6446 -1.2991 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867823470.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:21 Heat of formation + Delta-G solvation = -137.203570 kcal Electronic energy + Delta-G solvation = -28594.134217 eV Core-core repulsion = 24701.734958 eV Total energy + Delta-G solvation = -3892.399259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.66812 -39.47101 -38.42018 -37.25343 -36.96378 -35.69563 -35.11751 -31.94436 -31.62006 -31.28224 -28.20958 -27.84297 -27.36239 -25.66529 -23.65186 -22.97077 -22.77116 -20.46093 -19.93537 -19.23581 -18.68039 -18.11100 -17.75730 -17.24432 -16.91341 -16.55353 -16.08054 -15.95507 -15.43084 -15.25373 -15.10520 -15.02897 -14.77070 -14.34073 -14.18758 -13.73400 -13.51194 -13.36060 -13.31887 -13.22128 -13.12099 -13.06700 -12.87570 -12.84939 -12.75375 -12.62420 -12.56870 -12.36318 -12.23556 -11.82540 -11.59695 -11.55612 -11.38905 -11.34586 -11.15655 -11.03221 -10.00847 -9.80074 -9.59090 -8.75299 -6.47777 -0.61048 0.37070 0.82017 1.36299 1.45420 1.49011 1.96609 2.16076 2.53820 2.69622 3.14679 3.31632 3.49235 3.69911 3.75441 3.87674 3.93628 4.14141 4.21719 4.26912 4.30972 4.40350 4.52437 4.66381 4.76099 4.79253 4.80787 4.86944 4.88561 4.91448 4.99277 5.02523 5.05377 5.16199 5.16615 5.17597 5.29506 5.37434 5.44554 5.45833 5.52904 5.59489 5.85812 5.90893 6.07492 6.49635 6.77169 6.81317 6.81830 8.22434 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015713 B = 0.003605 C = 0.003346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1781.581361 B = 7766.009273 C = 8366.223394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.067 4.067 3 C -0.135 4.135 4 C -0.097 4.097 5 C 0.098 3.902 6 H 0.065 0.935 7 O -0.573 6.573 8 C 0.083 3.917 9 N -0.985 5.985 10 S 2.710 3.290 11 O -0.990 6.990 12 O -0.977 6.977 13 C -0.642 4.642 14 C -0.150 4.150 15 C -0.122 4.122 16 C -0.142 4.142 17 C 0.064 3.936 18 C -0.499 4.499 19 H 0.079 0.921 20 C 0.040 3.960 21 N -0.820 5.820 22 Si 0.982 3.018 23 H -0.262 1.262 24 H -0.264 1.264 25 H -0.259 1.259 26 C -0.147 4.147 27 C 0.115 3.885 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.395 0.605 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.132 0.868 40 H 0.128 0.872 41 H 0.114 0.886 42 H 0.293 0.707 43 H 0.109 0.891 44 H 0.094 0.906 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.890 10.594 9.898 15.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.069 4.069 3 C -0.193 4.193 4 C -0.134 4.134 5 C 0.038 3.962 6 H 0.083 0.917 7 O -0.380 6.380 8 C -0.042 4.042 9 N -0.825 5.825 10 S 2.805 3.195 11 O -0.980 6.980 12 O -0.967 6.967 13 C -0.730 4.730 14 C -0.171 4.171 15 C -0.141 4.141 16 C -0.162 4.162 17 C 0.060 3.940 18 C -0.528 4.528 19 H 0.097 0.903 20 C -0.176 4.176 21 N -0.445 5.445 22 Si 0.803 3.197 23 H -0.186 1.186 24 H -0.188 1.188 25 H -0.183 1.183 26 C -0.168 4.168 27 C -0.010 4.010 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.058 0.942 31 H 0.084 0.916 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.245 0.755 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.132 0.868 42 H 0.103 0.897 43 H 0.127 0.873 44 H 0.113 0.887 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.269 11.159 9.851 15.486 hybrid contribution 0.814 -1.850 -0.823 2.182 sum -3.455 9.309 9.029 13.421 Atomic orbital electron populations 1.22006 0.94370 1.01357 1.03045 1.20830 0.96186 0.96487 0.93433 1.21787 1.01656 0.92668 1.03207 1.21503 1.01369 0.92527 0.98008 1.22110 0.97939 0.93270 0.82897 0.91667 1.86463 1.78271 1.31802 1.41475 1.22303 1.01929 0.95453 0.84542 1.57388 1.75306 1.19600 1.30178 1.01105 0.73562 0.72264 0.72564 1.93476 1.71898 1.54435 1.78225 1.93479 1.72597 1.56839 1.73807 1.30359 1.21695 1.04998 1.15959 1.20455 1.00328 0.99427 0.96883 1.21154 0.97508 0.95844 0.99596 1.21657 1.01618 0.94847 0.98059 1.18037 0.91259 0.93996 0.90664 1.19843 1.02578 0.96170 1.34190 0.90275 1.26730 0.94851 1.04430 0.91626 1.69802 1.06055 1.37473 1.31207 0.85243 0.78234 0.76333 0.79931 1.18595 1.18850 1.18268 1.20832 1.02032 0.93781 1.00201 1.21878 1.01184 0.77985 0.99919 0.90462 0.92104 0.94210 0.91633 0.91575 0.90800 0.89823 0.90968 0.75510 0.90393 0.89355 0.85052 0.85435 0.86808 0.89657 0.87303 0.88738 0.90050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 7.98 71.98 0.57 -2.41 16 2 C -0.07 -1.28 0.77 -52.11 -0.04 -1.32 16 3 C -0.14 -1.91 8.48 71.98 0.61 -1.30 16 4 C -0.10 -1.86 4.36 30.62 0.13 -1.72 16 5 C 0.10 2.16 3.28 30.67 0.10 2.26 16 6 H 0.07 1.42 6.33 -2.38 -0.02 1.41 16 7 O -0.57 -11.97 13.32 -148.98 -1.98 -13.96 16 8 C 0.08 2.21 6.10 86.36 0.53 2.74 16 9 N -0.99 -28.76 2.73 -513.09 -1.40 -30.16 16 10 S 2.71 100.97 5.72 -56.49 -0.32 100.65 16 11 O -0.99 -40.99 15.86 -128.00 -2.03 -43.02 16 12 O -0.98 -37.72 15.85 -128.00 -2.03 -39.75 16 13 C -0.64 -28.25 5.97 22.22 0.13 -28.12 16 14 C -0.15 -6.43 9.53 22.46 0.21 -6.21 16 15 C -0.12 -5.44 10.02 22.22 0.22 -5.22 16 16 C -0.14 -7.24 8.70 22.73 0.20 -7.04 16 17 C 0.06 3.40 5.58 -21.29 -0.12 3.28 16 18 C -0.50 -26.36 9.05 23.46 0.21 -26.15 16 19 H 0.08 4.05 7.91 -2.91 -0.02 4.03 16 20 C 0.04 1.92 5.14 85.26 0.44 2.36 16 21 N -0.82 -40.89 10.95 21.82 0.24 -40.66 16 22 Si 0.98 36.84 29.60 68.60 2.03 38.87 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 H -0.26 -9.27 7.11 99.48 0.71 -8.57 16 25 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 26 C -0.15 -7.28 9.26 22.73 0.21 -7.07 16 27 C 0.11 2.76 5.16 86.36 0.45 3.20 16 28 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 29 H 0.06 1.23 8.14 -2.38 -0.02 1.22 16 30 H 0.04 0.91 5.97 -2.39 -0.01 0.89 16 31 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 34 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.40 5.52 9.08 -74.05 -0.67 4.85 16 37 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.09 2.45 6.92 -2.39 -0.02 2.43 16 39 H 0.13 4.86 7.59 -2.91 -0.02 4.84 16 40 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.11 5.93 6.16 -2.91 -0.02 5.92 16 42 H 0.29 13.12 8.30 -92.71 -0.77 12.35 16 43 H 0.11 5.21 7.60 -2.91 -0.02 5.18 16 44 H 0.09 2.32 6.92 -2.39 -0.02 2.30 16 45 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 Total: -1.00 -65.17 368.85 -1.30 -66.47 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: 0.33 Total: 34.27 kcal Atomic # 6 Polarization: -76.58 SS G_CDS: 3.86 Total: -72.72 kcal Atomic # 7 Polarization: -69.65 SS G_CDS: -1.16 Total: -70.81 kcal Atomic # 8 Polarization: -90.69 SS G_CDS: -6.04 Total: -96.73 kcal Atomic # 14 Polarization: 36.84 SS G_CDS: 2.03 Total: 38.87 kcal Atomic # 16 Polarization: 100.97 SS G_CDS: -0.32 Total: 100.65 kcal Total: -65.17 -1.30 -66.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867823470.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.729 kcal (2) G-P(sol) polarization free energy of solvation -65.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds