Wall clock time and date at job start Sat Apr 11 2020 05:37:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53000 * 109.50142 * 2 1 4 4 C 1.53045 * 109.49769 * 120.06413 * 2 1 3 5 5 C 1.53043 * 109.53639 * 58.58738 * 4 2 1 6 6 H 1.09004 * 109.49381 * 301.40997 * 5 4 2 7 7 O 1.42899 * 109.52105 * 181.33060 * 5 4 2 8 8 C 1.53195 * 109.31305 * 61.36459 * 5 4 2 9 9 N 1.46924 * 108.77614 * 305.36149 * 8 5 4 10 10 S 1.65599 * 120.63562 * 233.58951 * 9 8 5 11 11 O 1.42106 * 106.39913 * 342.60792 * 10 9 8 12 12 O 1.42092 * 106.40149 * 209.68970 * 10 9 8 13 13 C 1.76202 * 107.21809 * 96.14414 * 10 9 8 14 14 C 1.37641 * 120.12263 * 112.40782 * 13 10 9 15 15 C 1.38612 * 120.24308 * 180.02562 * 14 13 10 16 16 C 1.38658 * 120.50518 * 359.97438 * 15 14 13 17 17 C 1.37599 * 120.24649 * 0.02562 * 16 15 14 18 18 C 1.40693 * 120.13077 * 292.42848 * 13 10 9 19 19 C 1.41398 * 120.24111 * 359.95875 * 18 13 10 20 20 H 1.08000 * 120.00096 * 331.18672 * 19 18 13 21 21 C 1.39952 * 119.99943 * 151.19160 * 19 18 13 22 22 N 1.30819 * 120.00041 * 166.21875 * 21 19 18 23 23 Si 1.86804 * 119.99652 * 346.22133 * 21 19 18 24 24 H 1.48501 * 109.47242 * 95.27445 * 23 21 19 25 25 H 1.48494 * 109.46850 * 215.27224 * 23 21 19 26 26 H 1.48493 * 109.47178 * 335.27260 * 23 21 19 27 27 C 1.46931 * 118.73380 * 53.86386 * 9 8 5 28 28 H 1.09005 * 109.47171 * 299.93436 * 1 2 3 29 29 H 1.08998 * 109.47271 * 59.93408 * 1 2 3 30 30 H 1.08997 * 109.47700 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47544 * 180.02562 * 3 2 1 32 32 H 1.08996 * 109.46930 * 300.06756 * 3 2 1 33 33 H 1.09002 * 109.46859 * 60.06514 * 3 2 1 34 34 H 1.08995 * 109.46124 * 298.56320 * 4 2 1 35 35 H 1.09002 * 109.45740 * 178.60137 * 4 2 1 36 36 H 0.96703 * 113.99864 * 180.14076 * 7 5 4 37 37 H 1.09001 * 109.58134 * 185.57743 * 8 5 4 38 38 H 1.08998 * 109.58770 * 65.15194 * 8 5 4 39 39 H 1.08000 * 119.87863 * 0.02562 * 14 13 10 40 40 H 1.08007 * 119.74932 * 180.02562 * 15 14 13 41 41 H 1.07998 * 119.87532 * 179.74337 * 16 15 14 42 42 H 1.07994 * 120.12553 * 179.97438 * 17 16 15 43 43 H 0.96999 * 120.00008 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.58718 * 65.92921 * 27 9 8 45 45 H 1.09010 * 109.58281 * 186.35263 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0407 1.4422 0.0000 4 6 2.0408 -0.7227 1.2486 5 6 1.5030 -2.1554 1.2666 6 1 0.4132 -2.1351 1.2547 7 8 1.9548 -2.8203 2.4481 8 6 2.0140 -2.9040 0.0316 9 7 1.6514 -2.1386 -1.1690 10 16 0.8198 -2.8563 -2.4082 11 8 0.9569 -4.2587 -2.2241 12 8 1.2148 -2.1863 -3.5974 13 6 -0.8871 -2.4880 -2.1729 14 6 -1.5451 -1.6664 -3.0597 15 6 -2.8878 -1.3746 -2.8768 16 6 -3.5833 -1.9058 -1.8012 17 6 -2.9457 -2.7296 -0.9022 18 6 -1.5826 -3.0324 -1.0777 19 6 -0.9171 -3.8780 -0.1605 20 1 -0.0811 -4.4782 -0.4881 21 6 -1.3417 -3.9374 1.1717 22 7 -0.9183 -4.8990 1.9510 23 14 -2.5133 -2.6434 1.8370 24 1 -3.9080 -3.1453 1.7471 25 1 -2.1807 -2.3571 3.2556 26 1 -2.3825 -1.3991 1.0371 27 6 2.0462 -0.7257 -1.2518 28 1 -0.3634 0.5128 0.8906 29 1 -0.3634 0.5148 -0.8894 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1307 1.4417 -0.0005 32 1 1.6766 1.9566 -0.8894 33 1 1.6786 1.9559 0.8906 34 1 1.6988 -0.1952 2.1390 35 1 3.1305 -0.7441 1.2355 36 1 1.6525 -3.7357 2.5243 37 1 1.5553 -3.8919 -0.0126 38 1 3.0979 -3.0043 0.0876 39 1 -1.0134 -1.2475 -3.9012 40 1 -3.3964 -0.7293 -3.5778 41 1 -4.6282 -1.6685 -1.6661 42 1 -3.4892 -3.1419 -0.0650 43 1 -1.2123 -4.9399 2.8744 44 1 3.1327 -0.6520 -1.2983 45 1 1.6087 -0.2757 -2.1431 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867823634.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:27 Heat of formation + Delta-G solvation = -128.091214 kcal Electronic energy + Delta-G solvation = -31025.585002 eV Core-core repulsion = 27133.580884 eV Total energy + Delta-G solvation = -3892.004118 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61229 -39.55330 -38.24828 -37.11470 -36.74547 -35.65811 -34.92100 -32.47519 -31.81196 -31.15258 -28.11835 -27.79254 -27.10464 -25.47744 -23.76430 -23.03551 -22.65982 -20.09122 -19.52552 -19.40114 -18.90060 -18.03776 -17.99177 -17.14912 -17.05829 -16.08352 -15.94222 -15.88810 -15.44436 -15.32732 -15.27123 -14.89924 -14.64142 -14.57061 -14.04192 -13.94169 -13.64325 -13.29995 -13.15898 -13.13438 -13.03947 -12.97195 -12.83427 -12.74697 -12.65260 -12.54479 -12.40629 -12.22633 -12.07467 -11.73071 -11.66067 -11.49453 -11.25502 -11.14625 -10.98654 -10.83302 -9.92020 -9.69392 -9.56084 -8.97813 -6.69290 -0.27274 0.37283 0.80842 1.20950 1.34154 1.41170 2.01369 2.16408 2.50270 2.95151 3.22197 3.35884 3.61381 3.81799 3.90450 3.95992 4.09003 4.21071 4.28690 4.31108 4.41092 4.52584 4.58161 4.63728 4.69074 4.77064 4.82617 4.86951 4.92097 4.93652 5.00546 5.09450 5.14080 5.23364 5.25681 5.30276 5.35653 5.40383 5.50816 5.55107 5.63176 5.71691 5.79275 5.86822 6.11696 6.30844 6.55949 6.71964 6.75056 8.02906 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009705 B = 0.008878 C = 0.006929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2884.376549 B = 3153.158485 C = 4039.804692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.069 4.069 3 C -0.132 4.132 4 C -0.094 4.094 5 C 0.088 3.912 6 H 0.059 0.941 7 O -0.576 6.576 8 C 0.099 3.901 9 N -0.983 5.983 10 S 2.709 3.291 11 O -1.001 7.001 12 O -1.001 7.001 13 C -0.775 4.775 14 C 0.007 3.993 15 C -0.247 4.247 16 C -0.041 4.041 17 C -0.260 4.260 18 C 0.158 3.842 19 C -0.478 4.478 20 H 0.108 0.892 21 C 0.078 3.922 22 N -0.800 5.800 23 Si 0.925 3.075 24 H -0.269 1.269 25 H -0.281 1.281 26 H -0.233 1.233 27 C 0.125 3.875 28 H 0.053 0.947 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.072 0.928 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.068 0.932 35 H 0.080 0.920 36 H 0.384 0.616 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.127 0.873 40 H 0.135 0.865 41 H 0.131 0.869 42 H 0.100 0.900 43 H 0.300 0.700 44 H 0.094 0.906 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.774 10.806 0.602 11.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.071 4.071 3 C -0.190 4.190 4 C -0.131 4.131 5 C 0.028 3.972 6 H 0.077 0.923 7 O -0.381 6.381 8 C -0.027 4.027 9 N -0.821 5.821 10 S 2.807 3.193 11 O -0.991 6.991 12 O -0.991 6.991 13 C -0.869 4.869 14 C -0.013 4.013 15 C -0.267 4.267 16 C -0.059 4.059 17 C -0.279 4.279 18 C 0.153 3.847 19 C -0.505 4.505 20 H 0.126 0.874 21 C -0.144 4.144 22 N -0.423 5.423 23 Si 0.750 3.250 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.156 1.156 27 C 0.000 4.000 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.091 0.909 32 H 0.086 0.914 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.232 0.768 37 H 0.101 0.899 38 H 0.098 0.902 39 H 0.145 0.855 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.117 0.883 43 H 0.111 0.889 44 H 0.112 0.888 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.563 10.685 0.280 11.267 hybrid contribution -1.736 -0.623 0.763 1.996 sum 1.826 10.062 1.043 10.280 Atomic orbital electron populations 1.22152 0.95122 1.02804 1.01595 1.20938 0.95490 0.96663 0.93974 1.21767 1.01852 0.92512 1.02840 1.21498 1.01423 0.92344 0.97848 1.22255 0.98479 0.93084 0.83357 0.92303 1.86314 1.78015 1.31105 1.42708 1.22117 1.00572 0.95655 0.84318 1.57341 1.70902 1.20564 1.33295 1.00755 0.74152 0.72392 0.71955 1.93456 1.87405 1.32245 1.86015 1.93424 1.83368 1.76454 1.45896 1.30033 1.23071 1.21517 1.12269 1.20677 0.95139 0.90851 0.94617 1.20916 0.94857 1.08882 1.02045 1.21213 0.99286 0.92493 0.92924 1.21266 0.95315 1.08079 1.03238 1.17148 0.91339 0.86795 0.89425 1.20344 1.16088 1.20107 0.93947 0.87412 1.26457 0.95226 0.95883 0.96813 1.69639 1.36944 1.26898 1.08793 0.86136 0.78979 0.82345 0.77500 1.19573 1.20775 1.15570 1.21854 1.01324 0.78310 0.98512 0.92761 0.92317 0.92448 0.90887 0.91388 0.91756 0.91301 0.90134 0.76764 0.89881 0.90206 0.85494 0.84756 0.85130 0.88266 0.88867 0.88834 0.89264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.93 7.99 71.98 0.58 -4.36 16 2 C -0.07 -1.80 0.77 -51.96 -0.04 -1.84 16 3 C -0.13 -2.48 8.48 71.98 0.61 -1.87 16 4 C -0.09 -2.63 4.36 30.62 0.13 -2.49 16 5 C 0.09 3.06 3.15 30.67 0.10 3.15 16 6 H 0.06 2.30 3.21 -2.39 -0.01 2.29 16 7 O -0.58 -20.09 13.32 -148.98 -1.99 -22.08 16 8 C 0.10 3.57 5.15 86.36 0.44 4.01 16 9 N -0.98 -34.93 2.72 -512.26 -1.39 -36.32 16 10 S 2.71 114.95 5.11 -56.49 -0.29 114.66 16 11 O -1.00 -49.44 14.32 -128.00 -1.83 -51.27 16 12 O -1.00 -42.79 15.89 -128.00 -2.03 -44.83 16 13 C -0.77 -33.42 5.28 22.73 0.12 -33.30 16 14 C 0.01 0.27 9.54 22.22 0.21 0.48 16 15 C -0.25 -8.76 10.05 22.46 0.23 -8.53 16 16 C -0.04 -1.51 10.02 22.22 0.22 -1.29 16 17 C -0.26 -11.17 6.95 22.73 0.16 -11.02 16 18 C 0.16 7.23 4.02 -21.29 -0.09 7.15 16 19 C -0.48 -22.96 6.52 23.46 0.15 -22.81 16 20 H 0.11 5.70 3.97 -2.91 -0.01 5.69 16 21 C 0.08 3.52 4.38 85.26 0.37 3.90 16 22 N -0.80 -36.36 13.93 21.83 0.30 -36.06 16 23 Si 0.93 37.34 23.27 68.60 1.60 38.93 16 24 H -0.27 -10.74 6.76 99.48 0.67 -10.07 16 25 H -0.28 -10.97 7.11 99.48 0.71 -10.26 16 26 H -0.23 -9.34 6.16 99.48 0.61 -8.73 16 27 C 0.12 3.52 5.08 86.51 0.44 3.96 16 28 H 0.05 1.57 8.14 -2.38 -0.02 1.55 16 29 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.06 2.12 3.42 -2.39 -0.01 2.11 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 36 H 0.38 13.15 9.08 -74.06 -0.67 12.48 16 37 H 0.08 3.50 4.86 -2.39 -0.01 3.49 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.13 4.48 7.32 -2.91 -0.02 4.46 16 40 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 41 H 0.13 3.93 8.06 -2.91 -0.02 3.90 16 42 H 0.10 4.26 4.27 -2.91 -0.01 4.25 16 43 H 0.30 12.37 8.30 -92.71 -0.77 11.60 16 44 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 45 H 0.09 2.48 7.30 -2.38 -0.02 2.46 16 Total: -1.00 -57.39 341.46 -1.76 -59.15 By element: Atomic # 1 Polarization: 42.44 SS G_CDS: 0.24 Total: 42.68 kcal Atomic # 6 Polarization: -68.50 SS G_CDS: 3.64 Total: -64.87 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -1.09 Total: -72.37 kcal Atomic # 8 Polarization: -112.33 SS G_CDS: -5.85 Total: -118.18 kcal Atomic # 14 Polarization: 37.34 SS G_CDS: 1.60 Total: 38.93 kcal Atomic # 16 Polarization: 114.95 SS G_CDS: -0.29 Total: 114.66 kcal Total: -57.39 -1.76 -59.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867823634.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.942 kcal (2) G-P(sol) polarization free energy of solvation -57.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds