Wall clock time and date at job start Sat Apr 11 2020 05:37:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47440 * 2 1 4 4 C 1.53003 * 109.47031 * 239.99934 * 2 1 3 5 5 O 1.42905 * 109.47040 * 119.99937 * 2 1 3 6 6 C 1.42897 * 113.99820 * 59.99914 * 5 2 1 7 7 C 1.53495 * 114.20596 * 209.99721 * 6 5 2 8 8 N 1.47066 * 87.98550 * 220.14604 * 7 6 5 9 9 S 1.65600 * 136.05828 * 207.08145 * 8 7 6 10 10 O 1.42105 * 106.40200 * 336.46551 * 9 8 7 11 11 O 1.42106 * 106.40260 * 203.54572 * 9 8 7 12 12 C 1.76196 * 107.21722 * 90.00406 * 9 8 7 13 13 C 1.38659 * 119.87900 * 270.02343 * 12 9 8 14 14 C 1.38606 * 120.50510 * 179.97438 * 13 12 9 15 15 C 1.37643 * 120.24533 * 359.97438 * 14 13 12 16 16 C 1.40693 * 119.74454 * 359.74855 * 15 14 13 17 17 C 1.41400 * 120.24436 * 180.28046 * 16 15 14 18 18 H 1.07996 * 120.00100 * 204.52217 * 17 16 15 19 19 C 1.39947 * 119.99769 * 24.51916 * 17 16 15 20 20 N 1.30815 * 120.00517 * 17.72741 * 19 17 16 21 21 Si 1.86808 * 119.99688 * 197.73010 * 19 17 16 22 22 H 1.48492 * 109.47190 * 60.00050 * 21 19 17 23 23 H 1.48498 * 109.46678 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47096 * 300.00013 * 21 19 17 25 25 C 1.37595 * 119.87611 * 90.00248 * 12 9 8 26 26 C 1.47065 * 87.88623 * 27.34722 * 8 7 6 27 27 H 1.09006 * 109.47034 * 300.00312 * 1 2 3 28 28 H 1.08999 * 109.47378 * 59.99706 * 1 2 3 29 29 H 1.09001 * 109.47648 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47679 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47405 * 299.99919 * 3 2 1 32 32 H 1.09006 * 109.47262 * 59.99827 * 3 2 1 33 33 H 1.09000 * 109.47316 * 300.00110 * 4 2 1 34 34 H 1.08997 * 109.47151 * 60.00322 * 4 2 1 35 35 H 1.09000 * 109.46879 * 180.02562 * 4 2 1 36 36 H 1.08994 * 113.28531 * 343.06854 * 6 5 2 37 37 H 1.09000 * 113.46566 * 105.36801 * 7 6 5 38 38 H 1.09000 * 113.46801 * 334.93216 * 7 6 5 39 39 H 1.08007 * 119.74405 * 359.97438 * 13 12 9 40 40 H 1.07998 * 119.87668 * 180.02562 * 14 13 12 41 41 H 1.07999 * 120.12435 * 180.02562 * 15 14 13 42 42 H 0.96995 * 120.00754 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.12840 * 359.97438 * 25 12 9 44 44 H 1.08997 * 113.47186 * 87.43308 * 26 8 7 45 45 H 1.08997 * 113.46442 * 217.88015 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 6 1.4290 -2.5444 2.7043 8 7 2.0271 -3.8141 2.2649 9 16 1.9472 -5.3979 2.7419 10 8 1.5519 -5.3865 4.1068 11 8 3.1422 -6.0157 2.2840 12 6 0.6261 -6.1459 1.8476 13 6 -0.6568 -6.1360 2.3736 14 6 -1.7058 -6.7200 1.6809 15 6 -1.4838 -7.3167 0.4605 16 6 -0.1872 -7.3276 -0.0856 17 6 0.0516 -7.9324 -1.3412 18 1 1.0383 -8.2970 -1.5860 19 6 -0.9906 -8.0586 -2.2667 20 7 -2.0713 -7.3329 -2.1378 21 14 -0.8384 -9.2634 -3.6862 22 1 -0.6644 -10.6380 -3.1522 23 1 -2.0675 -9.2066 -4.5175 24 1 0.3381 -8.9028 -4.5175 25 6 0.8712 -6.7372 0.6296 26 6 2.7327 -3.0573 1.2199 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 0.7441 -2.2741 0.6129 37 1 0.3905 -2.6404 3.0209 38 1 2.0415 -2.0024 3.4248 39 1 -0.8401 -5.6696 3.3304 40 1 -2.7011 -6.7061 2.0999 41 1 -2.3026 -7.7708 -0.0777 42 1 -2.7935 -7.4200 -2.7794 43 1 1.8711 -6.7431 0.2213 44 1 3.6888 -2.6505 1.5491 45 1 2.8048 -3.5903 0.2718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867894402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:30 Heat of formation + Delta-G solvation = -68.726717 kcal Electronic energy + Delta-G solvation = -27917.071110 eV Core-core repulsion = 24027.641230 eV Total energy + Delta-G solvation = -3889.429880 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.01773 -37.71975 -37.67318 -36.66727 -35.33057 -33.88532 -33.15973 -30.11549 -29.82299 -28.11214 -27.53982 -27.12854 -25.90254 -25.51212 -22.00316 -21.35614 -21.02137 -19.99417 -18.60828 -17.97533 -17.07371 -16.91906 -15.98399 -15.72199 -15.40891 -15.13813 -14.92862 -14.71580 -14.34357 -13.96273 -13.49583 -13.42100 -13.33207 -13.01112 -12.61605 -12.51695 -12.45316 -12.30054 -12.00344 -11.94008 -11.93266 -11.82580 -11.64525 -11.58702 -11.43341 -11.39132 -11.27040 -11.04858 -10.91686 -10.91296 -10.66261 -10.56570 -9.81819 -9.65726 -9.48289 -9.38277 -8.88970 -8.07548 -7.74489 -6.96640 -4.57521 0.85771 2.15903 2.60531 2.96740 2.98837 3.05563 3.33349 3.65491 3.79554 4.26474 4.32498 4.38707 4.64897 4.65693 4.76102 4.84369 4.86884 5.07229 5.37255 5.38315 5.41169 5.43833 5.57175 5.57612 5.60185 5.65423 5.70100 5.73122 5.87748 5.92006 5.96872 6.11886 6.13821 6.14922 6.15141 6.57518 6.61609 6.72629 6.85852 7.00460 7.17753 7.21026 7.34733 7.69036 7.76858 7.90396 8.36254 8.62991 8.67844 9.98784 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.003980 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.764556 B = 7033.285362 C = 8699.081365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.105 3.895 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.360 6.360 6 C 0.047 3.953 7 C 0.131 3.869 8 N -1.041 6.041 9 S 2.715 3.285 10 O -0.968 6.968 11 O -0.965 6.965 12 C -0.629 4.629 13 C -0.147 4.147 14 C -0.120 4.120 15 C -0.118 4.118 16 C 0.092 3.908 17 C -0.461 4.461 18 H 0.083 0.917 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.911 3.089 22 H -0.262 1.262 23 H -0.277 1.277 24 H -0.264 1.264 25 C -0.125 4.125 26 C 0.114 3.886 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.106 0.894 40 H 0.098 0.902 41 H 0.125 0.875 42 H 0.284 0.716 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.979 13.944 0.659 14.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.066 3.934 3 C -0.193 4.193 4 C -0.237 4.237 5 O -0.278 6.278 6 C -0.014 4.014 7 C 0.005 3.995 8 N -0.879 5.879 9 S 2.814 3.186 10 O -0.959 6.959 11 O -0.955 6.955 12 C -0.722 4.722 13 C -0.169 4.169 14 C -0.140 4.140 15 C -0.138 4.138 16 C 0.089 3.911 17 C -0.490 4.490 18 H 0.101 0.899 19 C -0.142 4.142 20 N -0.419 5.419 21 Si 0.735 3.265 22 H -0.186 1.186 23 H -0.202 1.202 24 H -0.188 1.188 25 C -0.147 4.147 26 C -0.012 4.012 27 H 0.083 0.917 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.124 0.876 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.129 0.871 44 H 0.106 0.894 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.446 13.497 1.377 13.998 hybrid contribution -0.859 -0.792 -1.402 1.825 sum 2.587 12.705 -0.025 12.966 Atomic orbital electron populations 1.22488 0.95512 1.03058 1.02789 1.21547 0.93270 0.93022 0.85564 1.21749 1.01880 0.93354 1.02354 1.22501 1.02252 1.01395 0.97599 1.87978 1.73754 1.23110 1.42927 1.24231 0.97678 0.81428 0.98023 1.22632 0.99350 0.81376 0.96127 1.59903 1.60191 1.20698 1.47150 1.00946 0.74189 0.70237 0.73214 1.93508 1.84465 1.85585 1.32347 1.93523 1.45752 1.73605 1.82669 1.29775 1.13569 1.18147 1.10675 1.20078 0.91384 1.05921 0.99480 1.20810 0.96998 1.00180 0.95987 1.21645 0.98364 0.99954 0.93810 1.17670 0.91153 0.89783 0.92500 1.19596 0.97121 1.33967 0.98345 0.89932 1.25924 0.94336 0.94583 0.99353 1.69760 1.06182 1.31407 1.34599 0.86302 0.78724 0.81402 0.80022 1.18643 1.20214 1.18804 1.20772 0.99150 1.00813 0.93928 1.23034 0.96557 0.90404 0.91246 0.91661 0.91505 0.91682 0.91837 0.91253 0.91875 0.91687 0.91601 0.91625 0.87240 0.90021 0.89281 0.87640 0.88342 0.85709 0.90507 0.87119 0.89378 0.90108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.38 37.16 0.31 -1.36 16 2 C 0.11 1.01 1.11 -90.62 -0.10 0.91 16 3 C -0.14 -1.07 8.84 37.16 0.33 -0.74 16 4 C -0.18 -1.70 8.38 37.16 0.31 -1.39 16 5 O -0.36 -4.11 10.04 -35.23 -0.35 -4.46 16 6 C 0.05 0.57 3.19 -26.08 -0.08 0.49 16 7 C 0.13 1.70 8.57 -8.51 -0.07 1.63 16 8 N -1.04 -16.56 4.23 -125.04 -0.53 -17.08 16 9 S 2.72 53.44 6.27 -107.50 -0.67 52.77 16 10 O -0.97 -20.50 17.27 -57.17 -0.99 -21.49 16 11 O -0.96 -21.05 17.27 -57.17 -0.99 -22.03 16 12 C -0.63 -13.90 5.97 -39.66 -0.24 -14.14 16 13 C -0.15 -3.22 9.53 -39.29 -0.37 -3.59 16 14 C -0.12 -2.69 10.02 -39.66 -0.40 -3.09 16 15 C -0.12 -2.91 8.70 -38.87 -0.34 -3.25 16 16 C 0.09 2.37 5.57 -106.83 -0.60 1.77 16 17 C -0.46 -11.69 9.06 -37.74 -0.34 -12.03 16 18 H 0.08 2.02 7.91 -52.49 -0.41 1.60 16 19 C 0.08 1.81 5.14 -17.34 -0.09 1.72 16 20 N -0.79 -19.25 10.95 55.55 0.61 -18.64 16 21 Si 0.91 17.80 29.60 -169.99 -5.03 12.77 16 22 H -0.26 -5.13 7.11 56.52 0.40 -4.72 16 23 H -0.28 -5.25 7.11 56.52 0.40 -4.85 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 C -0.13 -3.00 9.26 -38.88 -0.36 -3.36 16 26 C 0.11 1.53 8.59 -8.37 -0.07 1.46 16 27 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.66 6.28 -51.93 -0.33 0.34 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.69 6.98 -51.93 -0.36 0.32 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.11 1.35 5.55 -51.93 -0.29 1.06 16 37 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 38 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.11 2.09 7.60 -52.48 -0.40 1.69 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.49 16 41 H 0.13 3.12 6.16 -52.49 -0.32 2.80 16 42 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 43 H 0.11 2.56 7.60 -52.49 -0.40 2.16 16 44 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 LS Contribution 381.24 15.07 5.75 5.75 Total: -1.00 -30.04 381.24 -11.04 -41.08 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.72 Total: 6.32 kcal Atomic # 6 Polarization: -32.86 SS G_CDS: -2.11 Total: -34.97 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: 0.08 Total: -35.73 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -2.33 Total: -47.99 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 53.44 SS G_CDS: -0.67 Total: 52.77 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -30.04 -11.04 -41.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867894402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.645 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds