Wall clock time and date at job start Sat Apr 11 2020 05:37:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47440 * 2 1 4 4 C 1.53003 * 109.47031 * 239.99934 * 2 1 3 5 5 O 1.42905 * 109.47040 * 119.99937 * 2 1 3 6 6 C 1.42897 * 113.99820 * 59.99914 * 5 2 1 7 7 C 1.53495 * 114.20596 * 209.99721 * 6 5 2 8 8 N 1.47066 * 87.98550 * 220.14604 * 7 6 5 9 9 S 1.65600 * 136.05828 * 207.08145 * 8 7 6 10 10 O 1.42105 * 106.40200 * 336.46551 * 9 8 7 11 11 O 1.42106 * 106.40260 * 203.54572 * 9 8 7 12 12 C 1.76196 * 107.21722 * 90.00406 * 9 8 7 13 13 C 1.38659 * 119.87900 * 270.02343 * 12 9 8 14 14 C 1.38606 * 120.50510 * 179.97438 * 13 12 9 15 15 C 1.37643 * 120.24533 * 359.97438 * 14 13 12 16 16 C 1.40693 * 119.74454 * 359.74855 * 15 14 13 17 17 C 1.41400 * 120.24436 * 180.28046 * 16 15 14 18 18 H 1.07996 * 120.00100 * 204.52217 * 17 16 15 19 19 C 1.39947 * 119.99769 * 24.51916 * 17 16 15 20 20 N 1.30815 * 120.00517 * 17.72741 * 19 17 16 21 21 Si 1.86808 * 119.99688 * 197.73010 * 19 17 16 22 22 H 1.48492 * 109.47190 * 60.00050 * 21 19 17 23 23 H 1.48498 * 109.46678 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47096 * 300.00013 * 21 19 17 25 25 C 1.37595 * 119.87611 * 90.00248 * 12 9 8 26 26 C 1.47065 * 87.88623 * 27.34722 * 8 7 6 27 27 H 1.09006 * 109.47034 * 300.00312 * 1 2 3 28 28 H 1.08999 * 109.47378 * 59.99706 * 1 2 3 29 29 H 1.09001 * 109.47648 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47679 * 180.02562 * 3 2 1 31 31 H 1.09006 * 109.47405 * 299.99919 * 3 2 1 32 32 H 1.09006 * 109.47262 * 59.99827 * 3 2 1 33 33 H 1.09000 * 109.47316 * 300.00110 * 4 2 1 34 34 H 1.08997 * 109.47151 * 60.00322 * 4 2 1 35 35 H 1.09000 * 109.46879 * 180.02562 * 4 2 1 36 36 H 1.08994 * 113.28531 * 343.06854 * 6 5 2 37 37 H 1.09000 * 113.46566 * 105.36801 * 7 6 5 38 38 H 1.09000 * 113.46801 * 334.93216 * 7 6 5 39 39 H 1.08007 * 119.74405 * 359.97438 * 13 12 9 40 40 H 1.07998 * 119.87668 * 180.02562 * 14 13 12 41 41 H 1.07999 * 120.12435 * 180.02562 * 15 14 13 42 42 H 0.96995 * 120.00754 * 179.97438 * 20 19 17 43 43 H 1.08002 * 120.12840 * 359.97438 * 25 12 9 44 44 H 1.08997 * 113.47186 * 87.43308 * 26 8 7 45 45 H 1.08997 * 113.46442 * 217.88015 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 6 1.4290 -2.5444 2.7043 8 7 2.0271 -3.8141 2.2649 9 16 1.9472 -5.3979 2.7419 10 8 1.5519 -5.3865 4.1068 11 8 3.1422 -6.0157 2.2840 12 6 0.6261 -6.1459 1.8476 13 6 -0.6568 -6.1360 2.3736 14 6 -1.7058 -6.7200 1.6809 15 6 -1.4838 -7.3167 0.4605 16 6 -0.1872 -7.3276 -0.0856 17 6 0.0516 -7.9324 -1.3412 18 1 1.0383 -8.2970 -1.5860 19 6 -0.9906 -8.0586 -2.2667 20 7 -2.0713 -7.3329 -2.1378 21 14 -0.8384 -9.2634 -3.6862 22 1 -0.6644 -10.6380 -3.1522 23 1 -2.0675 -9.2066 -4.5175 24 1 0.3381 -8.9028 -4.5175 25 6 0.8712 -6.7372 0.6296 26 6 2.7327 -3.0573 1.2199 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 1.6766 -1.7489 -1.2493 34 1 1.6767 -0.2074 -2.1392 35 1 3.1299 -0.7217 -1.2490 36 1 0.7441 -2.2741 0.6129 37 1 0.3905 -2.6404 3.0209 38 1 2.0415 -2.0024 3.4248 39 1 -0.8401 -5.6696 3.3304 40 1 -2.7011 -6.7061 2.0999 41 1 -2.3026 -7.7708 -0.0777 42 1 -2.7935 -7.4200 -2.7794 43 1 1.8711 -6.7431 0.2213 44 1 3.6888 -2.6505 1.5491 45 1 2.8048 -3.5903 0.2718 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867894402.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:29 Heat of formation + Delta-G solvation = -87.222145 kcal Electronic energy + Delta-G solvation = -27917.873132 eV Core-core repulsion = 24027.641230 eV Total energy + Delta-G solvation = -3890.231902 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.01273 -39.48135 -38.66250 -38.33042 -36.99863 -35.69689 -33.99145 -31.94706 -31.62435 -29.11163 -28.29376 -27.98240 -27.37784 -26.94129 -23.72513 -22.83268 -22.46144 -20.86475 -20.21036 -19.48536 -18.50081 -17.92747 -17.66946 -17.19130 -16.88186 -16.53918 -16.19027 -15.98483 -15.41755 -15.36484 -15.07127 -14.90812 -14.34499 -14.32865 -13.96234 -13.75393 -13.43292 -13.38912 -13.28729 -13.25604 -13.15905 -13.13985 -13.07260 -12.85805 -12.78369 -12.75560 -12.63387 -12.57276 -12.42542 -12.22647 -11.77512 -11.59799 -11.41918 -11.32318 -11.16065 -10.42058 -10.15896 -9.87185 -9.59514 -8.75394 -6.47755 -0.69886 0.36185 0.81748 1.36519 1.45202 1.48947 1.94501 2.16145 2.52999 2.68270 2.77582 3.09066 3.46088 3.47935 3.70454 3.97238 4.01053 4.05051 4.17283 4.24291 4.39645 4.47687 4.54605 4.62510 4.64260 4.69152 4.77271 4.80923 4.81894 4.88036 4.88502 4.99792 5.02094 5.04200 5.08630 5.19747 5.24338 5.37329 5.39013 5.41673 5.46793 5.53068 5.85406 5.90584 6.07094 6.33462 6.49356 6.76893 6.81473 8.22320 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.009816 B = 0.003980 C = 0.003218 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2851.764556 B = 7033.285362 C = 8699.081365 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.098 3.902 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.362 6.362 6 C 0.060 3.940 7 C 0.126 3.874 8 N -1.046 6.046 9 S 2.745 3.255 10 O -0.981 6.981 11 O -0.989 6.989 12 C -0.635 4.635 13 C -0.149 4.149 14 C -0.120 4.120 15 C -0.140 4.140 16 C 0.066 3.934 17 C -0.498 4.498 18 H 0.078 0.922 19 C 0.041 3.959 20 N -0.818 5.818 21 Si 0.981 3.019 22 H -0.262 1.262 23 H -0.264 1.264 24 H -0.259 1.259 25 C -0.146 4.146 26 C 0.106 3.894 27 H 0.068 0.932 28 H 0.079 0.921 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.064 0.936 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.066 0.934 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.128 0.872 41 H 0.115 0.885 42 H 0.293 0.707 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.792 15.469 0.528 15.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.059 3.941 3 C -0.190 4.190 4 C -0.238 4.238 5 O -0.281 6.281 6 C 0.000 4.000 7 C 0.001 3.999 8 N -0.888 5.888 9 S 2.842 3.158 10 O -0.972 6.972 11 O -0.980 6.980 12 C -0.725 4.725 13 C -0.170 4.170 14 C -0.140 4.140 15 C -0.160 4.160 16 C 0.062 3.938 17 C -0.527 4.527 18 H 0.096 0.904 19 C -0.175 4.175 20 N -0.444 5.444 21 Si 0.801 3.199 22 H -0.187 1.187 23 H -0.188 1.188 24 H -0.183 1.183 25 C -0.167 4.167 26 C -0.019 4.019 27 H 0.087 0.913 28 H 0.098 0.902 29 H 0.069 0.931 30 H 0.082 0.918 31 H 0.104 0.896 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.148 0.852 40 H 0.146 0.854 41 H 0.133 0.867 42 H 0.104 0.896 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 3.235 15.022 1.246 15.417 hybrid contribution -0.782 -1.106 -1.301 1.878 sum 2.452 13.917 -0.055 14.131 Atomic orbital electron populations 1.22488 0.95244 1.02377 1.03666 1.21775 0.93598 0.93845 0.84850 1.21756 1.01907 0.92022 1.03317 1.22508 1.02367 1.00603 0.98279 1.87971 1.73885 1.22331 1.43873 1.23944 0.96799 0.81853 0.97436 1.22934 1.00179 0.79721 0.97041 1.59543 1.60856 1.20245 1.48118 0.99925 0.72905 0.70665 0.72350 1.93482 1.84488 1.86303 1.32890 1.93486 1.46408 1.75123 1.82967 1.30215 1.14877 1.17426 1.09966 1.20441 0.91119 1.05241 1.00191 1.21140 0.98689 0.98994 0.95129 1.21657 0.97848 1.01456 0.94998 1.18012 0.92104 0.90438 0.93212 1.19837 0.97826 1.35754 0.99312 0.90379 1.26698 0.93585 0.95675 1.01532 1.69787 1.06781 1.32102 1.35703 0.85261 0.79201 0.78627 0.76770 1.18679 1.18759 1.18350 1.20822 0.98841 1.01939 0.95093 1.23316 0.97777 0.90313 0.90493 0.91278 0.90191 0.93096 0.91813 0.89569 0.91670 0.93315 0.90262 0.91455 0.87623 0.89103 0.87371 0.85235 0.85393 0.86700 0.89623 0.87437 0.87626 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.04 8.38 71.98 0.60 -2.44 16 2 C 0.10 1.71 1.11 -10.80 -0.01 1.70 16 3 C -0.13 -1.77 8.84 71.98 0.64 -1.13 16 4 C -0.18 -3.18 8.38 71.98 0.60 -2.58 16 5 O -0.36 -7.62 10.04 -148.98 -1.50 -9.11 16 6 C 0.06 1.40 3.19 31.02 0.10 1.50 16 7 C 0.13 3.03 8.57 83.18 0.71 3.75 16 8 N -1.05 -32.18 4.23 -550.01 -2.33 -34.51 16 9 S 2.75 106.76 6.27 -56.49 -0.35 106.41 16 10 O -0.98 -40.33 17.27 -128.00 -2.21 -42.54 16 11 O -0.99 -43.33 17.27 -128.00 -2.21 -45.54 16 12 C -0.64 -28.18 5.97 22.22 0.13 -28.05 16 13 C -0.15 -6.40 9.53 22.46 0.21 -6.18 16 14 C -0.12 -5.33 10.02 22.22 0.22 -5.11 16 15 C -0.14 -7.05 8.70 22.73 0.20 -6.85 16 16 C 0.07 3.47 5.57 -21.29 -0.12 3.36 16 17 C -0.50 -26.18 9.06 23.46 0.21 -25.96 16 18 H 0.08 4.00 7.91 -2.91 -0.02 3.97 16 19 C 0.04 1.98 5.14 85.26 0.44 2.42 16 20 N -0.82 -40.18 10.95 21.83 0.24 -39.94 16 21 Si 0.98 36.54 29.60 68.60 2.03 38.57 16 22 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 23 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 24 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 25 C -0.15 -7.22 9.26 22.73 0.21 -7.01 16 26 C 0.11 2.76 8.59 83.27 0.72 3.47 16 27 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 28 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.05 1.00 6.28 -2.39 -0.01 0.98 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.09 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.05 1.01 6.98 -2.39 -0.02 1.00 16 34 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.11 2.55 5.55 -2.39 -0.01 2.54 16 37 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 39 H 0.13 4.88 7.60 -2.91 -0.02 4.86 16 40 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 41 H 0.12 5.92 6.16 -2.91 -0.02 5.90 16 42 H 0.29 12.91 8.30 -92.71 -0.77 12.14 16 43 H 0.11 5.22 7.60 -2.91 -0.02 5.19 16 44 H 0.11 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -64.57 381.24 -0.48 -65.04 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.98 Total: 30.73 kcal Atomic # 6 Polarization: -73.99 SS G_CDS: 4.87 Total: -69.12 kcal Atomic # 7 Polarization: -72.36 SS G_CDS: -2.09 Total: -74.45 kcal Atomic # 8 Polarization: -91.27 SS G_CDS: -5.92 Total: -97.19 kcal Atomic # 14 Polarization: 36.54 SS G_CDS: 2.03 Total: 38.57 kcal Atomic # 16 Polarization: 106.76 SS G_CDS: -0.35 Total: 106.41 kcal Total: -64.57 -0.48 -65.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867894402.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.177 kcal (2) G-P(sol) polarization free energy of solvation -64.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds