Wall clock time and date at job start Sat Apr 11 2020 05:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 C 1.52993 * 109.47480 * 120.00423 * 2 1 3 5 5 N 1.46505 * 109.47151 * 300.00221 * 4 2 1 6 6 C 1.34773 * 120.00130 * 179.97438 * 5 4 2 7 7 O 1.21752 * 120.00125 * 0.02562 * 6 5 4 8 8 C 1.46244 * 119.99911 * 179.97438 * 6 5 4 9 9 S 1.75662 * 125.22788 * 0.02698 * 8 6 5 10 10 C 1.75468 * 92.09299 * 179.97438 * 9 8 6 11 11 C 1.32764 * 111.36226 * 0.24862 * 10 9 8 12 12 C 1.39542 * 125.22615 * 179.97438 * 8 6 5 13 13 C 1.40540 * 123.71725 * 0.07677 * 12 8 6 14 14 H 1.07998 * 119.99860 * 338.86827 * 13 12 8 15 15 C 1.40308 * 119.99902 * 158.87281 * 13 12 8 16 16 N 1.30633 * 120.00217 * 348.72465 * 15 13 12 17 17 Si 1.86803 * 119.99689 * 168.72573 * 15 13 12 18 18 H 1.48503 * 109.46961 * 94.96477 * 17 15 13 19 19 H 1.48500 * 109.47396 * 214.96609 * 17 15 13 20 20 H 1.48495 * 109.47236 * 334.96826 * 17 15 13 21 21 C 1.53004 * 109.47189 * 240.00550 * 2 1 3 22 22 O 1.42902 * 110.75134 * 303.61473 * 21 2 1 23 23 C 1.55309 * 110.84631 * 67.30864 * 21 2 1 24 24 C 1.54950 * 100.94048 * 152.32671 * 23 21 2 25 25 O 1.43652 * 105.13224 * 323.55598 * 24 23 21 26 26 C 1.43230 * 109.97260 * 24.42782 * 25 24 23 27 27 H 1.09001 * 109.47248 * 299.99264 * 1 2 3 28 28 H 1.08994 * 109.47465 * 59.99786 * 1 2 3 29 29 H 1.09005 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47159 * 186.70191 * 3 2 1 31 31 H 1.09000 * 109.47347 * 306.70801 * 3 2 1 32 32 H 1.09007 * 109.47091 * 66.70747 * 3 2 1 33 33 H 1.08996 * 109.47428 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47193 * 59.99904 * 4 2 1 35 35 H 0.97007 * 119.99598 * 359.97438 * 5 4 2 36 36 H 1.08002 * 124.32145 * 179.97438 * 10 9 8 37 37 H 1.07998 * 122.78355 * 179.75592 * 11 10 9 38 38 H 0.97000 * 120.00494 * 179.97438 * 16 15 13 39 39 H 0.96693 * 114.00201 * 179.97438 * 22 21 2 40 40 H 1.09000 * 111.12609 * 270.23783 * 23 21 2 41 41 H 1.08997 * 111.12840 * 34.40764 * 23 21 2 42 42 H 1.08995 * 110.30811 * 204.64460 * 24 23 21 43 43 H 1.09001 * 110.39743 * 82.50986 * 24 23 21 44 44 H 1.08998 * 109.83117 * 238.77578 * 26 25 24 45 45 H 1.08999 * 109.83186 * 117.80444 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.5517 -0.0308 2.4454 6 6 1.8770 -0.4916 3.6694 7 8 2.5770 -1.4815 3.7811 8 6 1.3899 0.1980 4.8635 9 16 0.3762 1.6326 4.8625 10 6 0.3382 1.6855 6.6160 11 6 1.0452 0.6941 7.1452 12 6 1.6582 -0.1831 6.1788 13 6 2.4448 -1.2955 6.5237 14 1 2.5959 -2.0921 5.8102 15 6 3.0337 -1.3713 7.7949 16 7 3.0394 -0.3240 8.5757 17 14 3.8095 -2.9700 8.3710 18 1 5.2668 -2.9437 8.0865 19 1 3.5930 -3.1271 9.8318 20 1 3.1855 -4.1101 7.6527 21 6 2.0400 -0.7211 -1.2493 22 8 1.5113 -2.0469 -1.3200 23 6 1.6964 0.0848 -2.5317 24 6 2.8400 -0.3636 -3.4762 25 8 3.9932 -0.4997 -2.6305 26 6 3.5834 -0.7428 -1.2797 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1234 1.4449 -0.1199 31 1 1.5819 1.9898 -0.8239 32 1 1.7779 1.9205 0.9440 33 1 3.1300 -0.7209 1.2493 34 1 1.6768 -1.7490 1.2491 35 1 0.9943 0.7581 2.3564 36 1 -0.1890 2.4321 7.1914 37 1 1.1495 0.5543 8.2109 38 1 3.4462 -0.3764 9.4547 39 1 1.8042 -2.5464 -2.0944 40 1 0.7232 -0.2044 -2.9285 41 1 1.7393 1.1577 -2.3447 42 1 3.0183 0.3930 -4.2401 43 1 2.5965 -1.3193 -3.9405 44 1 3.9770 0.0371 -0.6279 45 1 3.9460 -1.7173 -0.9529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869081430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:40 Heat of formation + Delta-G solvation = -113.921323 kcal Electronic energy + Delta-G solvation = -27927.985895 eV Core-core repulsion = 24036.596230 eV Total energy + Delta-G solvation = -3891.389665 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85169 -38.42908 -36.95586 -36.00216 -35.33799 -33.05456 -32.61522 -30.71821 -29.02667 -28.91774 -27.19476 -26.96721 -25.25453 -23.01879 -22.52090 -21.72907 -19.94343 -18.93451 -18.67845 -17.72218 -17.52996 -16.82155 -15.86253 -15.62364 -15.47055 -14.98606 -14.72637 -14.65979 -14.35346 -14.11646 -13.78255 -13.69896 -13.28781 -13.14320 -12.58882 -12.55175 -12.45623 -12.33210 -12.01353 -11.87099 -11.80493 -11.67485 -11.51129 -11.41323 -11.14840 -11.01319 -10.87335 -10.84572 -10.48426 -10.41343 -10.12058 -10.06821 -9.71387 -9.64290 -9.23273 -8.39407 -8.16714 -7.48300 -7.14085 -7.04644 -4.51385 2.17939 2.96218 2.99921 3.09033 3.14373 3.51802 3.65519 3.81428 3.86472 3.89851 4.01649 4.15447 4.46714 4.48188 4.56937 4.73605 4.82939 4.94354 5.01313 5.14111 5.29397 5.34941 5.43565 5.50224 5.57428 5.59913 5.69033 5.80245 5.88701 5.98609 6.05240 6.09146 6.17045 6.27012 6.40538 6.67163 6.71626 6.84031 7.19912 7.21739 7.35205 7.38635 7.50211 7.71988 8.37868 8.48039 8.62133 8.81818 9.64224 9.85587 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.003094 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.222494 B = 9048.165509 C =10258.536538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.051 4.051 3 C -0.152 4.152 4 C 0.141 3.859 5 N -0.748 5.748 6 C 0.600 3.400 7 O -0.565 6.565 8 C -0.431 4.431 9 S -0.056 6.056 10 C -0.206 4.206 11 C -0.100 4.100 12 C 0.139 3.861 13 C -0.376 4.376 14 H 0.113 0.887 15 C 0.067 3.933 16 N -0.777 5.777 17 Si 0.925 3.075 18 H -0.265 1.265 19 H -0.274 1.274 20 H -0.254 1.254 21 C 0.119 3.881 22 O -0.539 6.539 23 C -0.187 4.187 24 C 0.045 3.955 25 O -0.382 6.382 26 C 0.015 3.985 27 H 0.060 0.940 28 H 0.053 0.947 29 H 0.067 0.933 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.067 0.933 35 H 0.389 0.611 36 H 0.137 0.863 37 H 0.148 0.852 38 H 0.288 0.712 39 H 0.375 0.625 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.087 0.913 43 H 0.059 0.941 44 H 0.089 0.911 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.070 2.330 -15.890 16.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.052 4.052 3 C -0.209 4.209 4 C 0.016 3.984 5 N -0.403 5.403 6 C 0.397 3.603 7 O -0.448 6.448 8 C -0.550 4.550 9 S 0.199 5.801 10 C -0.340 4.340 11 C -0.132 4.132 12 C 0.128 3.872 13 C -0.407 4.407 14 H 0.131 0.869 15 C -0.155 4.155 16 N -0.401 5.401 17 Si 0.748 3.252 18 H -0.190 1.190 19 H -0.199 1.199 20 H -0.178 1.178 21 C 0.077 3.923 22 O -0.344 6.344 23 C -0.225 4.225 24 C -0.032 4.032 25 O -0.301 6.301 26 C -0.062 4.062 27 H 0.079 0.921 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.086 0.914 35 H 0.223 0.777 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.099 0.901 39 H 0.222 0.778 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.105 0.895 43 H 0.077 0.923 44 H 0.107 0.893 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.189 2.787 -16.203 16.747 hybrid contribution 0.725 -1.029 0.952 1.578 sum -2.464 1.758 -15.251 15.548 Atomic orbital electron populations 1.21796 0.93064 1.02986 1.01555 1.20587 0.97230 0.94924 0.92448 1.22129 1.01650 0.94321 1.02809 1.21060 0.98258 0.96220 0.82845 1.45871 1.56538 1.32719 1.05161 1.16832 0.79175 0.83097 0.81205 1.90646 1.40507 1.27505 1.86165 1.22547 1.28281 1.08822 0.95383 1.82639 1.59418 1.32876 1.05179 1.24938 1.08083 1.04546 0.96416 1.21798 0.95552 0.94447 1.01432 1.17930 0.89988 0.90956 0.88351 1.20104 1.19924 1.03536 0.97113 0.86891 1.26404 0.94714 0.98466 0.95869 1.69669 1.31624 1.29764 1.09062 0.85995 0.79972 0.81222 0.78000 1.18989 1.19863 1.17756 1.22536 0.91574 0.83417 0.94799 1.86617 1.73308 1.24908 1.49601 1.24063 1.00012 1.02654 0.95770 1.23415 0.85281 1.00654 0.93807 1.88452 1.30013 1.93465 1.18209 1.24140 0.94744 1.02980 0.84306 0.92082 0.92794 0.91426 0.91755 0.91977 0.91073 0.92568 0.91423 0.77682 0.84547 0.83512 0.90106 0.77773 0.88995 0.88534 0.89493 0.92258 0.89344 0.90113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 7.99 37.16 0.30 -1.32 16 2 C -0.05 -0.63 0.17 -154.51 -0.03 -0.65 16 3 C -0.15 -1.68 7.64 37.16 0.28 -1.40 16 4 C 0.14 2.34 4.23 -4.04 -0.02 2.32 16 5 N -0.75 -14.48 4.89 -61.75 -0.30 -14.78 16 6 C 0.60 14.84 7.76 -13.05 -0.10 14.74 16 7 O -0.56 -15.67 14.42 5.14 0.07 -15.60 16 8 C -0.43 -10.98 6.51 -35.88 -0.23 -11.21 16 9 S -0.06 -1.19 22.25 -107.50 -2.39 -3.58 16 10 C -0.21 -4.49 11.07 28.86 0.32 -4.17 16 11 C -0.10 -2.44 9.06 -39.12 -0.35 -2.80 16 12 C 0.14 3.73 5.70 -106.21 -0.61 3.12 16 13 C -0.38 -10.23 8.57 -37.94 -0.33 -10.55 16 14 H 0.11 3.24 5.95 -52.49 -0.31 2.93 16 15 C 0.07 1.65 5.39 -17.28 -0.09 1.55 16 16 N -0.78 -18.78 10.73 55.57 0.60 -18.19 16 17 Si 0.92 18.65 29.58 -169.99 -5.03 13.62 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 H -0.25 -5.21 7.11 56.52 0.40 -4.81 16 21 C 0.12 1.25 0.41 -88.67 -0.04 1.21 16 22 O -0.54 -5.86 11.97 -35.23 -0.42 -6.28 16 23 C -0.19 -1.51 5.39 -24.48 -0.13 -1.65 16 24 C 0.04 0.36 7.53 38.19 0.29 0.65 16 25 O -0.38 -4.37 11.36 -35.23 -0.40 -4.77 16 26 C 0.01 0.17 5.95 37.88 0.23 0.39 16 27 H 0.06 0.77 6.86 -51.93 -0.36 0.41 16 28 H 0.05 0.52 7.54 -51.93 -0.39 0.13 16 29 H 0.07 0.88 7.66 -51.93 -0.40 0.49 16 30 H 0.06 0.71 5.99 -51.93 -0.31 0.40 16 31 H 0.06 0.55 6.34 -51.93 -0.33 0.22 16 32 H 0.07 0.87 6.70 -51.93 -0.35 0.52 16 33 H 0.06 0.98 7.02 -51.93 -0.36 0.61 16 34 H 0.07 1.25 7.84 -51.93 -0.41 0.85 16 35 H 0.39 6.85 5.24 -40.82 -0.21 6.63 16 36 H 0.14 2.51 8.06 -52.49 -0.42 2.09 16 37 H 0.15 3.56 6.26 -52.49 -0.33 3.23 16 38 H 0.29 6.21 8.29 -40.82 -0.34 5.87 16 39 H 0.37 2.75 8.65 45.56 0.39 3.15 16 40 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.10 0.75 5.70 -51.93 -0.30 0.46 16 42 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.06 0.39 8.00 -51.93 -0.42 -0.02 16 44 H 0.09 1.05 5.38 -51.93 -0.28 0.77 16 45 H 0.08 0.96 8.07 -51.93 -0.42 0.54 16 LS Contribution 361.70 15.07 5.45 5.45 Total: -1.00 -30.63 361.70 -8.11 -38.74 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: -5.18 Total: 15.14 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: -0.51 Total: -9.76 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.29 Total: -32.97 kcal Atomic # 8 Polarization: -25.90 SS G_CDS: -0.75 Total: -26.65 kcal Atomic # 14 Polarization: 18.65 SS G_CDS: -5.03 Total: 13.62 kcal Atomic # 16 Polarization: -1.19 SS G_CDS: -2.39 Total: -3.58 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.63 -8.11 -38.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869081430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.177 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds