Wall clock time and date at job start Sat Apr 11 2020 05:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.46847 * 2 1 4 4 C 1.52993 * 109.47480 * 120.00423 * 2 1 3 5 5 N 1.46505 * 109.47151 * 300.00221 * 4 2 1 6 6 C 1.34773 * 120.00130 * 179.97438 * 5 4 2 7 7 O 1.21752 * 120.00125 * 0.02562 * 6 5 4 8 8 C 1.46244 * 119.99911 * 179.97438 * 6 5 4 9 9 S 1.75662 * 125.22788 * 0.02698 * 8 6 5 10 10 C 1.75468 * 92.09299 * 179.97438 * 9 8 6 11 11 C 1.32764 * 111.36226 * 0.24862 * 10 9 8 12 12 C 1.39542 * 125.22615 * 179.97438 * 8 6 5 13 13 C 1.40540 * 123.71725 * 0.07677 * 12 8 6 14 14 H 1.07998 * 119.99860 * 338.86827 * 13 12 8 15 15 C 1.40308 * 119.99902 * 158.87281 * 13 12 8 16 16 N 1.30633 * 120.00217 * 348.72465 * 15 13 12 17 17 Si 1.86803 * 119.99689 * 168.72573 * 15 13 12 18 18 H 1.48503 * 109.46961 * 94.96477 * 17 15 13 19 19 H 1.48500 * 109.47396 * 214.96609 * 17 15 13 20 20 H 1.48495 * 109.47236 * 334.96826 * 17 15 13 21 21 C 1.53004 * 109.47189 * 240.00550 * 2 1 3 22 22 O 1.42902 * 110.75134 * 303.61473 * 21 2 1 23 23 C 1.55309 * 110.84631 * 67.30864 * 21 2 1 24 24 C 1.54950 * 100.94048 * 152.32671 * 23 21 2 25 25 O 1.43652 * 105.13224 * 323.55598 * 24 23 21 26 26 C 1.43230 * 109.97260 * 24.42782 * 25 24 23 27 27 H 1.09001 * 109.47248 * 299.99264 * 1 2 3 28 28 H 1.08994 * 109.47465 * 59.99786 * 1 2 3 29 29 H 1.09005 * 109.46986 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47159 * 186.70191 * 3 2 1 31 31 H 1.09000 * 109.47347 * 306.70801 * 3 2 1 32 32 H 1.09007 * 109.47091 * 66.70747 * 3 2 1 33 33 H 1.08996 * 109.47428 * 180.02562 * 4 2 1 34 34 H 1.09005 * 109.47193 * 59.99904 * 4 2 1 35 35 H 0.97007 * 119.99598 * 359.97438 * 5 4 2 36 36 H 1.08002 * 124.32145 * 179.97438 * 10 9 8 37 37 H 1.07998 * 122.78355 * 179.75592 * 11 10 9 38 38 H 0.97000 * 120.00494 * 179.97438 * 16 15 13 39 39 H 0.96693 * 114.00201 * 179.97438 * 22 21 2 40 40 H 1.09000 * 111.12609 * 270.23783 * 23 21 2 41 41 H 1.08997 * 111.12840 * 34.40764 * 23 21 2 42 42 H 1.08995 * 110.30811 * 204.64460 * 24 23 21 43 43 H 1.09001 * 110.39743 * 82.50986 * 24 23 21 44 44 H 1.08998 * 109.83117 * 238.77578 * 26 25 24 45 45 H 1.08999 * 109.83186 * 117.80444 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.5517 -0.0308 2.4454 6 6 1.8770 -0.4916 3.6694 7 8 2.5770 -1.4815 3.7811 8 6 1.3899 0.1980 4.8635 9 16 0.3762 1.6326 4.8625 10 6 0.3382 1.6855 6.6160 11 6 1.0452 0.6941 7.1452 12 6 1.6582 -0.1831 6.1788 13 6 2.4448 -1.2955 6.5237 14 1 2.5959 -2.0921 5.8102 15 6 3.0337 -1.3713 7.7949 16 7 3.0394 -0.3240 8.5757 17 14 3.8095 -2.9700 8.3710 18 1 5.2668 -2.9437 8.0865 19 1 3.5930 -3.1271 9.8318 20 1 3.1855 -4.1101 7.6527 21 6 2.0400 -0.7211 -1.2493 22 8 1.5113 -2.0469 -1.3200 23 6 1.6964 0.0848 -2.5317 24 6 2.8400 -0.3636 -3.4762 25 8 3.9932 -0.4997 -2.6305 26 6 3.5834 -0.7428 -1.2797 27 1 -0.3634 0.5137 0.8901 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1234 1.4449 -0.1199 31 1 1.5819 1.9898 -0.8239 32 1 1.7779 1.9205 0.9440 33 1 3.1300 -0.7209 1.2493 34 1 1.6768 -1.7490 1.2491 35 1 0.9943 0.7581 2.3564 36 1 -0.1890 2.4321 7.1914 37 1 1.1495 0.5543 8.2109 38 1 3.4462 -0.3764 9.4547 39 1 1.8042 -2.5464 -2.0944 40 1 0.7232 -0.2044 -2.9285 41 1 1.7393 1.1577 -2.3447 42 1 3.0183 0.3930 -4.2401 43 1 2.5965 -1.3193 -3.9405 44 1 3.9770 0.0371 -0.6279 45 1 3.9460 -1.7173 -0.9529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869081430.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:39 Heat of formation + Delta-G solvation = -136.346789 kcal Electronic energy + Delta-G solvation = -27928.958336 eV Core-core repulsion = 24036.596230 eV Total energy + Delta-G solvation = -3892.362106 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.75698 -40.12553 -38.25389 -37.60072 -36.46475 -34.92360 -34.12593 -31.56352 -30.83849 -29.81667 -28.68372 -28.06830 -26.80312 -24.17549 -23.72112 -22.93596 -21.69136 -20.66863 -20.01513 -19.20049 -18.38597 -17.88667 -17.49435 -17.22177 -16.57849 -16.22059 -16.17673 -16.03341 -15.63695 -15.37938 -15.16625 -14.78768 -14.54238 -14.39316 -14.22384 -13.92880 -13.71256 -13.54763 -13.40744 -13.20492 -13.16930 -12.95865 -12.83859 -12.67798 -12.52344 -12.27385 -12.09195 -12.02706 -11.95645 -11.85483 -11.45630 -11.41144 -11.06730 -10.92152 -10.50788 -10.36865 -9.92360 -9.35982 -8.94697 -8.87533 -6.45831 0.31166 1.31579 1.33447 1.37402 1.47490 1.78502 1.97334 2.16376 2.52694 2.54477 2.78537 3.09464 3.28520 3.32337 3.57203 3.68800 3.84094 3.97408 4.10077 4.16746 4.21954 4.36537 4.54021 4.63561 4.64060 4.69295 4.77326 4.80918 4.83888 4.87596 4.96253 4.99536 5.01030 5.07583 5.13502 5.28216 5.29954 5.39457 5.42400 5.57572 5.73658 5.83803 5.91422 6.39536 6.57534 6.70547 6.72325 6.98142 7.74965 8.05102 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015903 B = 0.003094 C = 0.002729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1760.222494 B = 9048.165509 C =10258.536538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.043 4.043 3 C -0.151 4.151 4 C 0.142 3.858 5 N -0.730 5.730 6 C 0.589 3.411 7 O -0.607 6.607 8 C -0.470 4.470 9 S 0.009 5.991 10 C -0.191 4.191 11 C -0.131 4.131 12 C 0.111 3.889 13 C -0.418 4.418 14 H 0.084 0.916 15 C 0.036 3.964 16 N -0.790 5.790 17 Si 0.989 3.011 18 H -0.263 1.263 19 H -0.246 1.246 20 H -0.267 1.267 21 C 0.121 3.879 22 O -0.556 6.556 23 C -0.175 4.175 24 C 0.039 3.961 25 O -0.400 6.400 26 C 0.016 3.984 27 H 0.051 0.949 28 H 0.085 0.915 29 H 0.052 0.948 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.043 0.957 34 H 0.043 0.957 35 H 0.399 0.601 36 H 0.177 0.823 37 H 0.144 0.856 38 H 0.302 0.698 39 H 0.390 0.610 40 H 0.110 0.890 41 H 0.105 0.895 42 H 0.104 0.896 43 H 0.075 0.925 44 H 0.079 0.921 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.203 3.982 -17.176 18.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.044 4.044 3 C -0.208 4.208 4 C 0.019 3.981 5 N -0.383 5.383 6 C 0.385 3.615 7 O -0.494 6.494 8 C -0.589 4.589 9 S 0.264 5.736 10 C -0.325 4.325 11 C -0.163 4.163 12 C 0.099 3.901 13 C -0.448 4.448 14 H 0.102 0.898 15 C -0.184 4.184 16 N -0.414 5.414 17 Si 0.808 3.192 18 H -0.188 1.188 19 H -0.169 1.169 20 H -0.191 1.191 21 C 0.079 3.921 22 O -0.363 6.363 23 C -0.212 4.212 24 C -0.037 4.037 25 O -0.320 6.320 26 C -0.061 4.061 27 H 0.070 0.930 28 H 0.103 0.897 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.077 0.923 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.236 0.764 36 H 0.195 0.805 37 H 0.161 0.839 38 H 0.113 0.887 39 H 0.240 0.760 40 H 0.128 0.872 41 H 0.123 0.877 42 H 0.123 0.877 43 H 0.094 0.906 44 H 0.097 0.903 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.351 4.488 -17.534 18.615 hybrid contribution 1.041 -1.481 1.249 2.199 sum -3.310 3.007 -16.285 16.888 Atomic orbital electron populations 1.21777 0.92335 1.02353 1.02619 1.20538 0.97666 0.95423 0.90755 1.22137 1.01817 0.93398 1.03431 1.21143 0.97503 0.95577 0.83925 1.45651 1.55562 1.32588 1.04506 1.17082 0.78933 0.82758 0.82726 1.90608 1.42375 1.29315 1.87063 1.23013 1.29452 1.10972 0.95481 1.82211 1.57265 1.29690 1.04398 1.25459 1.06023 1.03783 0.97225 1.21680 0.97770 0.95859 1.01033 1.18388 0.90325 0.91625 0.89718 1.20081 1.22450 1.03858 0.98425 0.89821 1.27055 0.94667 1.01620 0.95066 1.69638 1.31348 1.30816 1.09623 0.85091 0.78739 0.76645 0.78702 1.18768 1.16911 1.19140 1.22451 0.90722 0.83745 0.95200 1.86586 1.73411 1.25387 1.50935 1.24027 1.00872 1.02530 0.93819 1.23672 0.84160 1.02231 0.93604 1.88435 1.31855 1.93527 1.18196 1.24030 0.95564 1.01861 0.84626 0.93018 0.89655 0.92927 0.91981 0.88815 0.92314 0.93880 0.93819 0.76433 0.80536 0.83873 0.88688 0.76033 0.87201 0.87701 0.87745 0.90646 0.90311 0.91580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 7.99 71.98 0.57 -2.36 16 2 C -0.04 -1.02 0.17 -52.18 -0.01 -1.03 16 3 C -0.15 -3.07 7.64 71.98 0.55 -2.52 16 4 C 0.14 4.94 4.23 86.38 0.36 5.30 16 5 N -0.73 -29.08 4.89 -467.48 -2.29 -31.37 16 6 C 0.59 30.50 7.76 86.32 0.67 31.17 16 7 O -0.61 -36.01 14.42 -4.52 -0.07 -36.08 16 8 C -0.47 -24.61 6.51 24.67 0.16 -24.45 16 9 S 0.01 0.37 22.25 -56.49 -1.26 -0.89 16 10 C -0.19 -7.99 11.07 66.64 0.74 -7.25 16 11 C -0.13 -6.45 9.06 22.61 0.20 -6.24 16 12 C 0.11 6.16 5.70 -20.89 -0.12 6.04 16 13 C -0.42 -23.96 8.57 23.34 0.20 -23.76 16 14 H 0.08 5.18 5.95 -2.91 -0.02 5.16 16 15 C 0.04 1.82 5.39 85.37 0.46 2.28 16 16 N -0.79 -38.60 10.73 21.89 0.23 -38.36 16 17 Si 0.99 39.06 29.58 68.60 2.03 41.09 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 19 H -0.25 -8.55 7.11 99.48 0.71 -7.84 16 20 H -0.27 -11.00 7.11 99.48 0.71 -10.29 16 21 C 0.12 2.39 0.41 -9.53 0.00 2.39 16 22 O -0.56 -11.67 11.97 -148.98 -1.78 -13.45 16 23 C -0.18 -2.26 5.39 32.05 0.17 -2.08 16 24 C 0.04 0.52 7.53 72.65 0.55 1.06 16 25 O -0.40 -8.66 11.36 -148.98 -1.69 -10.35 16 26 C 0.02 0.36 5.95 72.45 0.43 0.79 16 27 H 0.05 1.22 6.86 -2.39 -0.02 1.21 16 28 H 0.08 1.35 7.54 -2.39 -0.02 1.33 16 29 H 0.05 1.32 7.66 -2.38 -0.02 1.31 16 30 H 0.06 1.31 5.99 -2.38 -0.01 1.29 16 31 H 0.09 1.33 6.34 -2.39 -0.02 1.32 16 32 H 0.06 1.35 6.70 -2.38 -0.02 1.33 16 33 H 0.04 1.60 7.02 -2.39 -0.02 1.58 16 34 H 0.04 1.72 7.84 -2.38 -0.02 1.70 16 35 H 0.40 14.04 5.24 -92.70 -0.49 13.55 16 36 H 0.18 5.86 8.06 -2.91 -0.02 5.84 16 37 H 0.14 7.03 6.26 -2.91 -0.02 7.01 16 38 H 0.30 12.89 8.29 -92.71 -0.77 12.12 16 39 H 0.39 5.28 8.65 -74.06 -0.64 4.64 16 40 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.10 1.20 5.70 -2.39 -0.01 1.19 16 42 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.08 0.77 8.00 -2.39 -0.02 0.75 16 44 H 0.08 1.92 5.38 -2.39 -0.01 1.91 16 45 H 0.07 1.66 8.07 -2.39 -0.02 1.64 16 Total: -1.00 -70.80 361.70 0.05 -70.75 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.07 Total: 39.33 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 4.94 Total: -20.66 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: -2.05 Total: -69.73 kcal Atomic # 8 Polarization: -56.34 SS G_CDS: -3.54 Total: -59.88 kcal Atomic # 14 Polarization: 39.06 SS G_CDS: 2.03 Total: 41.09 kcal Atomic # 16 Polarization: 0.37 SS G_CDS: -1.26 Total: -0.89 kcal Total: -70.80 0.05 -70.75 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869081430.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.600 kcal (2) G-P(sol) polarization free energy of solvation -70.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds