Wall clock time and date at job start Sat Apr 11 2020 05:37:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.30633 * 2 1 4 4 O 1.42905 * 109.46981 * 302.16903 * 3 2 1 5 5 C 1.54790 * 110.52619 * 237.76463 * 2 1 3 6 6 N 1.48144 * 104.41980 * 265.22657 * 5 2 1 7 7 C 1.34774 * 127.83897 * 140.36690 * 6 5 2 8 8 O 1.21761 * 119.99933 * 3.62196 * 7 6 5 9 9 C 1.46237 * 119.99994 * 183.62923 * 7 6 5 10 10 S 1.75662 * 125.23019 * 5.41390 * 9 7 6 11 11 C 1.75476 * 92.09394 * 180.02562 * 10 9 7 12 12 C 1.32758 * 111.36023 * 0.02562 * 11 10 9 13 13 C 1.39547 * 125.22863 * 185.44914 * 9 7 6 14 14 C 1.40545 * 123.71326 * 359.97238 * 13 9 7 15 15 H 1.07997 * 120.00250 * 25.25228 * 14 13 9 16 16 C 1.40307 * 119.99675 * 205.25603 * 14 13 9 17 17 N 1.30642 * 120.00519 * 355.37193 * 16 14 13 18 18 Si 1.86799 * 119.99847 * 175.37728 * 16 14 13 19 19 H 1.48495 * 109.47106 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47509 * 119.99455 * 18 16 14 21 21 H 1.48499 * 109.47317 * 239.99417 * 18 16 14 22 22 C 1.48151 * 104.32181 * 320.10740 * 6 5 2 23 23 C 1.54293 * 110.34059 * 122.17056 * 2 1 3 24 24 C 1.52992 * 110.34267 * 359.97438 * 23 2 1 25 25 C 1.53003 * 110.34146 * 237.74183 * 23 2 1 26 26 O 1.42902 * 109.46823 * 183.00965 * 25 23 2 27 27 H 1.09004 * 109.47166 * 297.83097 * 1 2 3 28 28 H 1.09002 * 109.47049 * 57.82565 * 1 2 3 29 29 H 1.08995 * 109.47500 * 177.83098 * 1 2 3 30 30 H 1.08994 * 109.47647 * 62.17473 * 3 2 1 31 31 H 1.09004 * 109.47273 * 182.17672 * 3 2 1 32 32 H 0.96696 * 113.99899 * 180.02562 * 4 3 2 33 33 H 1.09001 * 110.54410 * 146.48494 * 5 2 1 34 34 H 1.09001 * 110.46094 * 23.92643 * 5 2 1 35 35 H 1.08002 * 124.31730 * 180.27030 * 11 10 9 36 36 H 1.08004 * 122.78444 * 179.97438 * 12 11 10 37 37 H 0.96995 * 120.00211 * 180.02562 * 17 16 14 38 38 H 1.08998 * 110.40190 * 158.62735 * 22 6 5 39 39 H 1.08997 * 110.40842 * 281.05574 * 22 6 5 40 40 H 1.08999 * 109.47107 * 176.98523 * 24 23 2 41 41 H 1.09001 * 109.47454 * 296.99453 * 24 23 2 42 42 H 1.09007 * 109.47403 * 56.99273 * 24 23 2 43 43 H 1.09006 * 109.46805 * 303.00618 * 25 23 2 44 44 H 1.08997 * 109.47335 * 63.00847 * 25 23 2 45 45 H 0.96699 * 113.99494 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 8 1.5535 2.1305 -1.1405 5 6 2.0727 -0.7732 -1.2262 6 7 2.3139 -2.1446 -0.7204 7 6 2.0773 -3.3119 -1.3510 8 8 1.6715 -3.3124 -2.4990 9 6 2.3079 -4.5781 -0.6565 10 16 2.7595 -4.7392 1.0334 11 6 2.7968 -6.4901 0.9230 12 6 2.4904 -6.9042 -0.3006 13 6 2.2036 -5.8439 -1.2346 14 6 1.8574 -6.0612 -2.5793 15 1 2.0469 -5.2950 -3.3163 16 6 1.2655 -7.2738 -2.9640 17 7 1.1186 -8.2349 -2.0915 18 14 0.6874 -7.5138 -4.7240 19 1 0.9656 -6.2840 -5.5085 20 1 1.4090 -8.6617 -5.3299 21 1 -0.7723 -7.7865 -4.7329 22 6 2.8801 -1.9415 0.6335 23 6 2.0663 -0.7703 1.2246 24 6 0.9061 -1.3008 2.0691 25 6 2.9691 0.1328 2.0674 26 8 3.5107 -0.6178 3.1562 27 1 -0.3634 0.4798 0.9088 28 1 -0.3633 0.5472 -0.8699 29 1 -0.3634 -1.0269 -0.0389 30 1 1.7372 1.9422 0.9088 31 1 3.1502 1.4193 -0.0390 32 1 1.8502 3.0486 -1.2053 33 1 3.0038 -0.3284 -1.5774 34 1 1.3321 -0.7878 -2.0258 35 1 3.0344 -7.1472 1.7466 36 1 2.4585 -7.9486 -0.5737 37 1 0.7098 -9.0733 -2.3576 38 1 2.7493 -2.8387 1.2386 39 1 3.9354 -1.6765 0.5684 40 1 1.2996 -1.8870 2.8996 41 1 0.3269 -0.4632 2.4578 42 1 0.2652 -1.9302 1.4517 43 1 3.7818 0.5133 1.4486 44 1 2.3866 0.9681 2.4560 45 1 4.0946 -0.1073 3.7337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869444538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:43 Heat of formation + Delta-G solvation = -99.760202 kcal Electronic energy + Delta-G solvation = -28800.432603 eV Core-core repulsion = 24909.657011 eV Total energy + Delta-G solvation = -3890.775593 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.50038 -37.73822 -36.80257 -36.16247 -35.50691 -32.95511 -32.91041 -31.10135 -28.94966 -28.37549 -26.96716 -25.53681 -24.97182 -24.65998 -22.06090 -21.16074 -19.66337 -18.61711 -18.08534 -17.88207 -16.81158 -16.68559 -16.02017 -15.73868 -15.49050 -15.28093 -14.72063 -14.43344 -14.04650 -13.69882 -13.51339 -13.46858 -13.20195 -12.97697 -12.72337 -12.34174 -12.21726 -11.99984 -11.89045 -11.73994 -11.49504 -11.37872 -11.25508 -11.16485 -10.97457 -10.89360 -10.61499 -10.48287 -10.39464 -10.24982 -10.10207 -10.04895 -9.73494 -9.43156 -8.90160 -8.42840 -7.90091 -7.38630 -7.04294 -6.92423 -4.48247 2.21747 3.00863 3.04607 3.15425 3.17678 3.70228 3.82344 3.88720 3.94374 4.00616 4.09224 4.37663 4.63810 4.78442 4.81515 5.04388 5.08568 5.20802 5.26247 5.32414 5.41147 5.45690 5.49618 5.73783 5.82034 5.96982 6.03772 6.07137 6.16830 6.19640 6.21707 6.29627 6.35471 6.44894 6.51431 6.66160 6.88272 7.15134 7.34301 7.37239 7.47414 7.56345 7.60610 7.82800 8.41796 8.53578 8.68108 8.82703 9.58898 9.94287 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004087 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.870260 B = 6849.393182 C = 8224.998232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.064 4.064 3 C 0.086 3.914 4 O -0.566 6.566 5 C 0.129 3.871 6 N -0.639 5.639 7 C 0.621 3.379 8 O -0.558 6.558 9 C -0.425 4.425 10 S -0.027 6.027 11 C -0.230 4.230 12 C -0.106 4.106 13 C 0.141 3.859 14 C -0.377 4.377 15 H 0.106 0.894 16 C 0.068 3.932 17 N -0.786 5.786 18 Si 0.926 3.074 19 H -0.253 1.253 20 H -0.271 1.271 21 H -0.270 1.270 22 C 0.123 3.877 23 C -0.063 4.063 24 C -0.132 4.132 25 C 0.086 3.914 26 O -0.563 6.563 27 H 0.054 0.946 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.049 0.951 32 H 0.375 0.625 33 H 0.057 0.943 34 H 0.082 0.918 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.286 0.714 38 H 0.099 0.901 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.052 0.948 42 H 0.065 0.935 43 H 0.048 0.952 44 H 0.047 0.953 45 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 14.957 8.197 17.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.066 4.066 3 C 0.008 3.992 4 O -0.370 6.370 5 C 0.005 3.995 6 N -0.374 5.374 7 C 0.421 3.579 8 O -0.441 6.441 9 C -0.544 4.544 10 S 0.229 5.771 11 C -0.363 4.363 12 C -0.138 4.138 13 C 0.130 3.870 14 C -0.408 4.408 15 H 0.124 0.876 16 C -0.153 4.153 17 N -0.411 5.411 18 Si 0.750 3.250 19 H -0.176 1.176 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.002 4.002 23 C -0.064 4.064 24 C -0.189 4.189 25 C 0.008 3.992 26 O -0.367 6.367 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.222 0.778 33 H 0.076 0.924 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.171 0.829 37 H 0.097 0.903 38 H 0.116 0.884 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 1.924 14.475 8.302 16.797 hybrid contribution 0.175 -0.187 -1.097 1.127 sum 2.099 14.288 7.204 16.139 Atomic orbital electron populations 1.21815 0.92910 1.02452 1.01600 1.21600 0.97295 0.92506 0.95168 1.22374 0.96747 0.92105 0.87939 1.86542 1.75119 1.28545 1.46832 1.22108 0.99878 0.82141 0.95379 1.48783 1.66871 1.04820 1.16966 1.16563 0.76234 0.80448 0.84645 1.90682 1.49554 1.86163 1.17687 1.22593 1.41778 0.95000 0.95010 1.82800 1.79708 1.01546 1.12999 1.25532 1.10312 0.99564 1.00844 1.21996 0.98228 1.01672 0.91860 1.17983 0.87561 0.88256 0.93210 1.19962 1.27806 0.98963 0.94098 0.87627 1.26358 0.93836 0.94515 1.00562 1.69603 1.31033 1.04456 1.35995 0.85932 0.78905 0.79575 0.80602 1.17602 1.19626 1.19503 1.22452 0.95824 0.97539 0.84418 1.21515 0.96025 0.95295 0.93602 1.21842 0.96755 1.00707 0.99582 1.22369 0.95645 0.93060 0.88127 1.86570 1.67453 1.41117 1.41588 0.92733 0.91909 0.91776 0.93418 0.93335 0.77834 0.92445 0.89990 0.85007 0.82865 0.90321 0.88372 0.92125 0.91604 0.92924 0.91637 0.93407 0.93477 0.77853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 7.14 37.16 0.27 -1.53 16 2 C -0.06 -0.87 0.84 -152.89 -0.13 -1.00 16 3 C 0.09 0.87 4.66 37.16 0.17 1.04 16 4 O -0.57 -5.87 12.71 -35.23 -0.45 -6.32 16 5 C 0.13 2.24 5.95 -2.19 -0.01 2.23 16 6 N -0.64 -13.25 3.31 -170.75 -0.57 -13.81 16 7 C 0.62 16.01 7.85 -13.05 -0.10 15.91 16 8 O -0.56 -16.01 14.83 5.13 0.08 -15.93 16 9 C -0.43 -11.16 6.44 -35.88 -0.23 -11.39 16 10 S -0.03 -0.59 18.81 -107.50 -2.02 -2.61 16 11 C -0.23 -5.23 11.07 28.86 0.32 -4.91 16 12 C -0.11 -2.68 9.12 -39.13 -0.36 -3.04 16 13 C 0.14 3.90 5.72 -106.21 -0.61 3.29 16 14 C -0.38 -10.49 8.43 -37.94 -0.32 -10.81 16 15 H 0.11 3.09 6.21 -52.49 -0.33 2.76 16 16 C 0.07 1.71 5.47 -17.28 -0.09 1.61 16 17 N -0.79 -19.46 10.45 55.57 0.58 -18.88 16 18 Si 0.93 19.31 29.56 -169.99 -5.03 14.28 16 19 H -0.25 -5.46 7.11 56.52 0.40 -5.06 16 20 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 21 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 22 C 0.12 2.16 5.42 -2.41 -0.01 2.14 16 23 C -0.06 -0.86 0.83 -153.11 -0.13 -0.99 16 24 C -0.13 -1.85 7.11 37.15 0.26 -1.58 16 25 C 0.09 0.88 4.64 37.16 0.17 1.05 16 26 O -0.56 -6.03 12.81 -35.23 -0.45 -6.48 16 27 H 0.05 0.63 6.88 -51.93 -0.36 0.28 16 28 H 0.06 0.88 7.62 -51.93 -0.40 0.48 16 29 H 0.06 1.02 6.72 -51.93 -0.35 0.68 16 30 H 0.05 0.39 6.89 -51.93 -0.36 0.04 16 31 H 0.05 0.44 6.68 -51.93 -0.35 0.10 16 32 H 0.38 2.04 9.12 45.56 0.42 2.45 16 33 H 0.06 0.94 7.84 -51.93 -0.41 0.53 16 34 H 0.08 1.59 7.65 -51.93 -0.40 1.20 16 35 H 0.13 2.58 8.06 -52.49 -0.42 2.16 16 36 H 0.15 3.88 6.01 -52.48 -0.32 3.57 16 37 H 0.29 6.33 8.29 -40.82 -0.34 5.99 16 38 H 0.10 1.89 3.26 -21.30 -0.07 1.82 16 39 H 0.06 1.02 7.86 -51.93 -0.41 0.62 16 40 H 0.06 0.96 7.79 -51.93 -0.40 0.56 16 41 H 0.05 0.62 6.98 -51.93 -0.36 0.25 16 42 H 0.06 1.06 6.61 -51.93 -0.34 0.72 16 43 H 0.05 0.44 6.62 -51.93 -0.34 0.10 16 44 H 0.05 0.39 6.98 -51.93 -0.36 0.03 16 45 H 0.38 2.14 9.12 45.56 0.42 2.56 16 LS Contribution 357.67 15.07 5.39 5.39 Total: -1.00 -33.03 357.67 -7.54 -40.56 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -4.27 Total: 11.77 kcal Atomic # 6 Polarization: -7.17 SS G_CDS: -0.80 Total: -7.97 kcal Atomic # 7 Polarization: -32.71 SS G_CDS: 0.02 Total: -32.69 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.82 Total: -28.73 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Atomic # 16 Polarization: -0.59 SS G_CDS: -2.02 Total: -2.61 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -33.03 -7.54 -40.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869444538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.196 kcal (2) G-P(sol) polarization free energy of solvation -33.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds