Wall clock time and date at job start Sat Apr 11 2020 05:37:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 110.30633 * 2 1 4 4 O 1.42905 * 109.46981 * 302.16903 * 3 2 1 5 5 C 1.54790 * 110.52619 * 237.76463 * 2 1 3 6 6 N 1.48144 * 104.41980 * 265.22657 * 5 2 1 7 7 C 1.34774 * 127.83897 * 140.36690 * 6 5 2 8 8 O 1.21761 * 119.99933 * 3.62196 * 7 6 5 9 9 C 1.46237 * 119.99994 * 183.62923 * 7 6 5 10 10 S 1.75662 * 125.23019 * 5.41390 * 9 7 6 11 11 C 1.75476 * 92.09394 * 180.02562 * 10 9 7 12 12 C 1.32758 * 111.36023 * 0.02562 * 11 10 9 13 13 C 1.39547 * 125.22863 * 185.44914 * 9 7 6 14 14 C 1.40545 * 123.71326 * 359.97238 * 13 9 7 15 15 H 1.07997 * 120.00250 * 25.25228 * 14 13 9 16 16 C 1.40307 * 119.99675 * 205.25603 * 14 13 9 17 17 N 1.30642 * 120.00519 * 355.37193 * 16 14 13 18 18 Si 1.86799 * 119.99847 * 175.37728 * 16 14 13 19 19 H 1.48495 * 109.47106 * 359.97438 * 18 16 14 20 20 H 1.48503 * 109.47509 * 119.99455 * 18 16 14 21 21 H 1.48499 * 109.47317 * 239.99417 * 18 16 14 22 22 C 1.48151 * 104.32181 * 320.10740 * 6 5 2 23 23 C 1.54293 * 110.34059 * 122.17056 * 2 1 3 24 24 C 1.52992 * 110.34267 * 359.97438 * 23 2 1 25 25 C 1.53003 * 110.34146 * 237.74183 * 23 2 1 26 26 O 1.42902 * 109.46823 * 183.00965 * 25 23 2 27 27 H 1.09004 * 109.47166 * 297.83097 * 1 2 3 28 28 H 1.09002 * 109.47049 * 57.82565 * 1 2 3 29 29 H 1.08995 * 109.47500 * 177.83098 * 1 2 3 30 30 H 1.08994 * 109.47647 * 62.17473 * 3 2 1 31 31 H 1.09004 * 109.47273 * 182.17672 * 3 2 1 32 32 H 0.96696 * 113.99899 * 180.02562 * 4 3 2 33 33 H 1.09001 * 110.54410 * 146.48494 * 5 2 1 34 34 H 1.09001 * 110.46094 * 23.92643 * 5 2 1 35 35 H 1.08002 * 124.31730 * 180.27030 * 11 10 9 36 36 H 1.08004 * 122.78444 * 179.97438 * 12 11 10 37 37 H 0.96995 * 120.00211 * 180.02562 * 17 16 14 38 38 H 1.08998 * 110.40190 * 158.62735 * 22 6 5 39 39 H 1.08997 * 110.40842 * 281.05574 * 22 6 5 40 40 H 1.08999 * 109.47107 * 176.98523 * 24 23 2 41 41 H 1.09001 * 109.47454 * 296.99453 * 24 23 2 42 42 H 1.09007 * 109.47403 * 56.99273 * 24 23 2 43 43 H 1.09006 * 109.46805 * 303.00618 * 25 23 2 44 44 H 1.08997 * 109.47335 * 63.00847 * 25 23 2 45 45 H 0.96699 * 113.99494 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0609 1.4349 0.0000 4 8 1.5535 2.1305 -1.1405 5 6 2.0727 -0.7732 -1.2262 6 7 2.3139 -2.1446 -0.7204 7 6 2.0773 -3.3119 -1.3510 8 8 1.6715 -3.3124 -2.4990 9 6 2.3079 -4.5781 -0.6565 10 16 2.7595 -4.7392 1.0334 11 6 2.7968 -6.4901 0.9230 12 6 2.4904 -6.9042 -0.3006 13 6 2.2036 -5.8439 -1.2346 14 6 1.8574 -6.0612 -2.5793 15 1 2.0469 -5.2950 -3.3163 16 6 1.2655 -7.2738 -2.9640 17 7 1.1186 -8.2349 -2.0915 18 14 0.6874 -7.5138 -4.7240 19 1 0.9656 -6.2840 -5.5085 20 1 1.4090 -8.6617 -5.3299 21 1 -0.7723 -7.7865 -4.7329 22 6 2.8801 -1.9415 0.6335 23 6 2.0663 -0.7703 1.2246 24 6 0.9061 -1.3008 2.0691 25 6 2.9691 0.1328 2.0674 26 8 3.5107 -0.6178 3.1562 27 1 -0.3634 0.4798 0.9088 28 1 -0.3633 0.5472 -0.8699 29 1 -0.3634 -1.0269 -0.0389 30 1 1.7372 1.9422 0.9088 31 1 3.1502 1.4193 -0.0390 32 1 1.8502 3.0486 -1.2053 33 1 3.0038 -0.3284 -1.5774 34 1 1.3321 -0.7878 -2.0258 35 1 3.0344 -7.1472 1.7466 36 1 2.4585 -7.9486 -0.5737 37 1 0.7098 -9.0733 -2.3576 38 1 2.7493 -2.8387 1.2386 39 1 3.9354 -1.6765 0.5684 40 1 1.2996 -1.8870 2.8996 41 1 0.3269 -0.4632 2.4578 42 1 0.2652 -1.9302 1.4517 43 1 3.7818 0.5133 1.4486 44 1 2.3866 0.9681 2.4560 45 1 4.0946 -0.1073 3.7337 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869444538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:42 Heat of formation + Delta-G solvation = -126.621661 kcal Electronic energy + Delta-G solvation = -28801.597403 eV Core-core repulsion = 24909.657011 eV Total energy + Delta-G solvation = -3891.940393 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.73942 -39.51982 -37.80791 -37.56016 -36.82015 -34.88675 -34.37622 -32.25839 -30.83405 -29.45518 -28.65328 -26.90768 -26.54856 -25.56763 -23.84096 -22.42491 -21.41939 -20.51571 -19.30587 -18.85313 -18.26463 -17.87276 -17.50299 -17.17170 -16.94239 -16.52500 -16.28149 -15.68455 -15.35051 -15.33937 -14.88514 -14.78967 -14.56660 -14.14018 -14.07455 -14.01255 -13.64485 -13.54671 -13.40008 -13.17342 -13.08142 -12.96471 -12.75777 -12.70690 -12.43011 -12.29178 -12.05657 -12.03866 -11.72369 -11.62103 -11.28298 -11.17999 -11.08275 -10.65221 -10.45946 -10.43304 -9.65969 -9.29039 -8.92792 -8.81082 -6.48765 0.28348 1.30160 1.32093 1.36328 1.46699 1.77239 1.99252 2.16206 2.23931 2.48186 3.09887 3.19582 3.27109 3.53339 3.79157 3.93759 4.10498 4.14663 4.15584 4.32731 4.41469 4.45045 4.51331 4.56409 4.63194 4.72843 4.73677 4.78480 4.82609 4.86519 4.92507 4.97049 5.03436 5.19601 5.21790 5.24541 5.36530 5.41529 5.51068 5.56195 5.65282 5.89688 6.37758 6.57830 6.71672 6.90247 7.01900 7.09534 7.63902 8.07768 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.015019 B = 0.004087 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.870260 B = 6849.393182 C = 8224.998232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.057 4.057 3 C 0.092 3.908 4 O -0.589 6.589 5 C 0.123 3.877 6 N -0.640 5.640 7 C 0.608 3.392 8 O -0.606 6.606 9 C -0.462 4.462 10 S 0.039 5.961 11 C -0.222 4.222 12 C -0.135 4.135 13 C 0.111 3.889 14 C -0.417 4.417 15 H 0.075 0.925 16 C 0.035 3.965 17 N -0.798 5.798 18 Si 0.991 3.009 19 H -0.274 1.274 20 H -0.245 1.245 21 H -0.258 1.258 22 C 0.117 3.883 23 C -0.057 4.057 24 C -0.128 4.128 25 C 0.091 3.909 26 O -0.586 6.586 27 H 0.083 0.917 28 H 0.055 0.945 29 H 0.028 0.972 30 H 0.082 0.918 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.070 0.930 34 H 0.049 0.951 35 H 0.169 0.831 36 H 0.149 0.851 37 H 0.299 0.701 38 H 0.082 0.918 39 H 0.071 0.929 40 H 0.059 0.941 41 H 0.082 0.918 42 H 0.031 0.969 43 H 0.065 0.935 44 H 0.081 0.919 45 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 17.092 10.630 20.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C 0.014 3.986 4 O -0.398 6.398 5 C 0.000 4.000 6 N -0.374 5.374 7 C 0.407 3.593 8 O -0.492 6.492 9 C -0.581 4.581 10 S 0.296 5.704 11 C -0.354 4.354 12 C -0.167 4.167 13 C 0.100 3.900 14 C -0.448 4.448 15 H 0.093 0.907 16 C -0.184 4.184 17 N -0.423 5.423 18 Si 0.811 3.189 19 H -0.199 1.199 20 H -0.168 1.168 21 H -0.182 1.182 22 C -0.008 4.008 23 C -0.058 4.058 24 C -0.185 4.185 25 C 0.013 3.987 26 O -0.394 6.394 27 H 0.102 0.898 28 H 0.074 0.926 29 H 0.048 0.952 30 H 0.100 0.900 31 H 0.083 0.917 32 H 0.248 0.752 33 H 0.088 0.912 34 H 0.068 0.932 35 H 0.187 0.813 36 H 0.166 0.834 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.050 0.950 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges 2.547 16.665 10.816 20.029 hybrid contribution 0.023 -0.748 -1.748 1.901 sum 2.570 15.916 9.068 18.498 Atomic orbital electron populations 1.21766 0.93360 1.00448 1.02744 1.21554 0.96881 0.94661 0.92696 1.22343 0.97505 0.89495 0.89259 1.86494 1.75618 1.30502 1.47169 1.22348 0.99824 0.81025 0.96792 1.48712 1.65598 1.04784 1.18297 1.16761 0.76174 0.81976 0.84372 1.90627 1.51698 1.87243 1.19656 1.23056 1.41984 0.95183 0.97847 1.82498 1.78328 1.00341 1.09271 1.26073 1.07384 1.01122 1.00847 1.21860 1.01140 1.01030 0.92679 1.18437 0.87937 0.89677 0.93956 1.19913 1.30774 0.99927 0.94212 0.90652 1.27045 0.93312 0.93527 1.04476 1.69584 1.30539 1.04861 1.37332 0.85028 0.79195 0.79224 0.75489 1.19868 1.16822 1.18174 1.22703 0.97076 0.98573 0.82414 1.21493 0.96084 0.94314 0.93952 1.21803 0.96708 1.01254 0.98772 1.22336 0.95906 0.92398 0.88030 1.86508 1.68288 1.42513 1.42114 0.89778 0.92592 0.95244 0.90001 0.91665 0.75169 0.91210 0.93207 0.81335 0.83381 0.88896 0.90126 0.91054 0.92226 0.89934 0.94969 0.91692 0.90127 0.75171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.36 7.14 71.98 0.51 -2.84 16 2 C -0.06 -1.43 0.84 -51.13 -0.04 -1.47 16 3 C 0.09 1.45 4.66 71.98 0.34 1.79 16 4 O -0.59 -10.43 12.71 -148.98 -1.89 -12.33 16 5 C 0.12 4.37 5.95 86.67 0.52 4.88 16 6 N -0.64 -27.55 3.31 -812.32 -2.69 -30.24 16 7 C 0.61 33.42 7.85 86.32 0.68 34.10 16 8 O -0.61 -37.75 14.83 -4.54 -0.07 -37.82 16 9 C -0.46 -25.49 6.44 24.67 0.16 -25.33 16 10 S 0.04 1.72 18.81 -56.49 -1.06 0.66 16 11 C -0.22 -9.99 11.07 66.64 0.74 -9.25 16 12 C -0.14 -7.05 9.12 22.60 0.21 -6.84 16 13 C 0.11 6.50 5.72 -20.89 -0.12 6.38 16 14 C -0.42 -24.87 8.43 23.34 0.20 -24.67 16 15 H 0.08 4.83 6.21 -2.91 -0.02 4.81 16 16 C 0.04 1.85 5.47 85.37 0.47 2.32 16 17 N -0.80 -40.50 10.45 21.89 0.23 -40.27 16 18 Si 0.99 40.98 29.56 68.60 2.03 43.01 16 19 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 20 H -0.24 -9.02 7.11 99.48 0.71 -8.32 16 21 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 22 C 0.12 4.00 5.42 86.53 0.47 4.47 16 23 C -0.06 -1.42 0.83 -51.27 -0.04 -1.46 16 24 C -0.13 -3.36 7.11 71.98 0.51 -2.85 16 25 C 0.09 1.42 4.64 71.98 0.33 1.75 16 26 O -0.59 -10.07 12.81 -148.98 -1.91 -11.98 16 27 H 0.08 1.71 6.88 -2.39 -0.02 1.69 16 28 H 0.06 1.55 7.62 -2.39 -0.02 1.53 16 29 H 0.03 0.97 6.72 -2.39 -0.02 0.95 16 30 H 0.08 0.81 6.89 -2.39 -0.02 0.80 16 31 H 0.07 0.85 6.68 -2.38 -0.02 0.84 16 32 H 0.40 2.87 9.12 -74.06 -0.68 2.19 16 33 H 0.07 2.28 7.84 -2.39 -0.02 2.26 16 34 H 0.05 2.07 7.65 -2.39 -0.02 2.05 16 35 H 0.17 6.21 8.06 -2.91 -0.02 6.19 16 36 H 0.15 7.75 6.01 -2.91 -0.02 7.73 16 37 H 0.30 13.32 8.29 -92.71 -0.77 12.55 16 38 H 0.08 3.08 3.26 -21.86 -0.07 3.00 16 39 H 0.07 2.29 7.86 -2.39 -0.02 2.27 16 40 H 0.06 1.63 7.79 -2.39 -0.02 1.61 16 41 H 0.08 1.64 6.98 -2.39 -0.02 1.63 16 42 H 0.03 1.04 6.61 -2.38 -0.02 1.03 16 43 H 0.07 0.83 6.62 -2.38 -0.02 0.81 16 44 H 0.08 0.79 6.98 -2.39 -0.02 0.77 16 45 H 0.40 2.71 9.12 -74.06 -0.68 2.04 16 Total: -1.00 -79.57 357.67 -0.80 -80.36 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: -0.35 Total: 27.62 kcal Atomic # 6 Polarization: -23.94 SS G_CDS: 4.92 Total: -19.03 kcal Atomic # 7 Polarization: -68.04 SS G_CDS: -2.46 Total: -70.50 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -3.87 Total: -62.13 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 2.03 Total: 43.01 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -1.06 Total: 0.66 kcal Total: -79.57 -0.80 -80.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869444538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.258 kcal (2) G-P(sol) polarization free energy of solvation -79.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds