Wall clock time and date at job start Sat Apr 11 2020 05:37:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00022 * 2 1 4 4 O 1.20823 * 120.00142 * 0.02562 * 3 2 1 5 5 C 1.50704 * 120.00042 * 180.02562 * 3 2 1 6 6 C 1.53001 * 109.47000 * 180.02562 * 5 3 2 7 7 N 1.46504 * 109.46981 * 180.02562 * 6 5 3 8 8 C 1.37100 * 119.99557 * 269.99933 * 7 6 5 9 9 H 1.08001 * 119.99910 * 140.69965 * 8 7 6 10 10 C 1.38946 * 120.00114 * 320.69231 * 8 7 6 11 11 N 1.31412 * 120.00575 * 159.03779 * 10 8 7 12 12 Si 1.86805 * 120.00182 * 339.03973 * 10 8 7 13 13 H 1.48500 * 109.47325 * 95.81282 * 12 10 8 14 14 H 1.48495 * 109.47390 * 215.81750 * 12 10 8 15 15 H 1.48506 * 109.46825 * 335.81754 * 12 10 8 16 16 C 1.34772 * 120.00140 * 89.99415 * 7 6 5 17 17 O 1.21286 * 120.00418 * 5.02178 * 16 7 6 18 18 C 1.50709 * 119.99726 * 185.01192 * 16 7 6 19 19 C 1.53003 * 109.46920 * 185.42912 * 18 16 7 20 20 C 1.52994 * 109.46988 * 179.24166 * 19 18 16 21 21 C 1.50698 * 109.47375 * 180.02562 * 20 19 18 22 22 S 1.75883 * 125.20185 * 270.02870 * 21 20 19 23 23 C 1.75877 * 90.97086 * 179.97438 * 22 21 20 24 24 C 1.33389 * 109.59831 * 359.97438 * 23 22 21 25 25 C 1.33388 * 125.20541 * 89.71338 * 21 20 19 26 26 C 1.50701 * 122.53742 * 0.02755 * 25 21 20 27 27 H 1.09008 * 109.46644 * 299.99666 * 1 2 3 28 28 H 1.08999 * 109.47122 * 59.99339 * 1 2 3 29 29 H 1.08993 * 109.47282 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46849 * 60.00720 * 5 3 2 31 31 H 1.08992 * 109.47038 * 300.00418 * 5 3 2 32 32 H 1.09000 * 109.47424 * 60.00004 * 6 5 3 33 33 H 1.09006 * 109.47000 * 299.99720 * 6 5 3 34 34 H 0.96993 * 120.00758 * 180.02562 * 11 10 8 35 35 H 1.08998 * 109.47068 * 65.43351 * 18 16 7 36 36 H 1.08997 * 109.46873 * 305.42843 * 18 16 7 37 37 H 1.08995 * 109.47352 * 299.24500 * 19 18 16 38 38 H 1.09010 * 109.46675 * 59.24386 * 19 18 16 39 39 H 1.09004 * 109.47192 * 300.00501 * 20 19 18 40 40 H 1.08998 * 109.47250 * 60.00128 * 20 19 18 41 41 H 1.08005 * 125.20638 * 180.02562 * 23 22 21 42 42 H 1.07999 * 122.54402 * 179.97438 * 24 23 22 43 43 H 1.09003 * 109.47040 * 89.99514 * 26 25 21 44 44 H 1.09000 * 109.47059 * 209.99167 * 26 25 21 45 45 H 1.09003 * 109.47087 * 329.99474 * 26 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2748 -0.0006 6 6 4.0002 2.7421 0.0002 7 7 5.4632 2.8187 -0.0010 8 6 6.1487 2.8537 1.1858 9 1 7.0753 2.3089 1.2904 10 6 5.6513 3.5901 2.2540 11 7 6.0427 3.3181 3.4786 12 14 4.4260 4.9668 1.9493 13 1 3.0461 4.4532 2.1426 14 1 4.6797 6.0756 2.9040 15 1 4.5780 5.4661 0.5590 16 6 6.1352 2.8548 -1.1687 17 8 5.5275 2.9158 -2.2165 18 6 7.6418 2.8196 -1.1724 19 6 8.1528 3.0077 -2.6022 20 6 9.6827 2.9909 -2.6034 21 6 10.1861 3.1768 -4.0116 22 16 10.5083 1.8779 -5.1529 23 6 11.0047 3.0376 -6.3785 24 6 10.9062 4.2748 -5.8897 25 6 10.4498 4.3518 -4.5851 26 6 10.2685 5.6637 -3.8659 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.9557 0.7810 -0.8909 31 1 3.9564 0.7805 0.8890 32 1 3.6108 3.2356 0.8906 33 1 3.6101 3.2367 -0.8894 34 1 5.6953 3.8319 4.2243 35 1 7.9837 1.8587 -0.7879 36 1 8.0255 3.6210 -0.5410 37 1 7.7801 2.1989 -3.2307 38 1 7.7997 3.9627 -2.9915 39 1 10.0555 3.7997 -1.9749 40 1 10.0358 2.0360 -2.2140 41 1 11.3375 2.7866 -7.3748 42 1 11.1603 5.1502 -6.4689 43 1 11.1935 5.9279 -3.3534 44 1 10.0176 6.4417 -4.5869 45 1 9.4633 5.5702 -3.1371 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342047.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:37:50 Heat of formation + Delta-G solvation = -99.509958 kcal Electronic energy + Delta-G solvation = -26789.124987 eV Core-core repulsion = 22898.360246 eV Total energy + Delta-G solvation = -3890.764741 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.23016 -39.02957 -38.46186 -36.37887 -35.31960 -34.29677 -32.33121 -31.26826 -30.62182 -28.87130 -27.61413 -25.74273 -24.92166 -23.88821 -22.59899 -21.26140 -20.42740 -19.03062 -18.32737 -17.57303 -17.27010 -16.54295 -16.48196 -16.37969 -15.93760 -15.40477 -15.10552 -14.86122 -14.10757 -13.99849 -13.83563 -13.78411 -13.30196 -12.99122 -12.81967 -12.67650 -12.62836 -12.44859 -12.21101 -12.05637 -11.90775 -11.78951 -11.73883 -11.38522 -11.28797 -11.05551 -10.96864 -10.75983 -10.66274 -10.64323 -10.25395 -10.22807 -10.16417 -9.91599 -9.26802 -8.67323 -8.51054 -8.29104 -7.90259 -6.55478 -4.18914 1.02854 1.67327 2.03656 2.49913 2.70418 2.89955 3.08458 3.23041 3.31880 3.67660 4.09520 4.31072 4.82008 4.88399 4.92922 5.12571 5.16155 5.18260 5.22405 5.39484 5.46398 5.47508 5.49346 5.51193 5.53492 5.65511 5.66937 5.80485 5.92417 5.96077 6.01070 6.03304 6.09373 6.15852 6.30209 6.37935 6.47607 6.52259 6.54309 6.63253 6.67890 6.77126 7.27365 7.98404 8.01645 8.16116 8.87534 9.26117 9.59737 10.54338 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012180 B = 0.002785 C = 0.002440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2298.309734 B =10052.481233 C =11474.312357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.122 4.122 6 C 0.114 3.886 7 N -0.468 5.468 8 C -0.351 4.351 9 H 0.107 0.893 10 C 0.073 3.927 11 N -0.856 5.856 12 Si 0.866 3.134 13 H -0.270 1.270 14 H -0.286 1.286 15 H -0.260 1.260 16 C 0.484 3.516 17 O -0.595 6.595 18 C -0.119 4.119 19 C -0.096 4.096 20 C -0.052 4.052 21 C -0.159 4.159 22 S 0.088 5.912 23 C -0.224 4.224 24 C -0.126 4.126 25 C -0.117 4.117 26 C -0.095 4.095 27 H 0.061 0.939 28 H 0.060 0.940 29 H 0.097 0.903 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.276 0.724 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.074 0.926 41 H 0.160 0.840 42 H 0.136 0.864 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.875 -2.866 -11.000 12.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.399 6.399 5 C -0.161 4.161 6 C -0.009 4.009 7 N -0.189 5.189 8 C -0.478 4.478 9 H 0.125 0.875 10 C -0.136 4.136 11 N -0.491 5.491 12 Si 0.694 3.306 13 H -0.196 1.196 14 H -0.213 1.213 15 H -0.184 1.184 16 C 0.275 3.725 17 O -0.480 6.480 18 C -0.159 4.159 19 C -0.134 4.134 20 C -0.091 4.091 21 C -0.276 4.276 22 S 0.353 5.647 23 C -0.359 4.359 24 C -0.157 4.157 25 C -0.128 4.128 26 C -0.154 4.154 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.123 0.877 31 H 0.134 0.866 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.103 0.897 40 H 0.092 0.908 41 H 0.177 0.823 42 H 0.153 0.847 43 H 0.085 0.915 44 H 0.082 0.918 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.246 -4.102 -11.264 12.717 hybrid contribution -0.755 2.200 0.038 2.326 sum 3.491 -1.902 -11.226 11.909 Atomic orbital electron populations 1.23203 0.77100 1.03241 1.02390 1.86537 1.22933 1.34011 1.84429 1.24033 0.92349 0.81019 0.71594 1.90645 1.67383 1.36350 1.45475 1.21804 0.86062 1.01876 1.06323 1.21364 0.83554 0.93054 1.02945 1.43726 1.03540 1.65444 1.06144 1.19054 1.09528 1.31722 0.87461 0.87509 1.25316 0.96914 0.96618 0.94726 1.69744 1.43041 1.37945 0.98352 0.87070 0.81334 0.82742 0.79503 1.19634 1.21319 1.18372 1.20565 0.90026 0.78684 0.83258 1.90558 1.70596 1.54768 1.32029 1.21385 0.93317 1.04148 0.97061 1.21338 0.91949 1.03318 0.96815 1.20257 0.96473 1.03079 0.89331 1.24409 1.07391 0.95039 1.00772 1.84261 1.64866 1.10664 1.04958 1.25477 1.10551 0.96362 1.03532 1.20033 1.02722 0.97525 0.95397 1.18850 1.03489 0.95732 0.94728 1.20532 1.02295 0.92684 0.99936 0.92072 0.92117 0.88410 0.87658 0.86649 0.90788 0.90236 0.91370 0.89767 0.88848 0.91524 0.91407 0.89734 0.90754 0.82266 0.84665 0.91453 0.91770 0.90920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.69 10.57 -39.25 -0.41 -6.11 16 3 C 0.47 8.61 7.96 36.01 0.29 8.90 16 4 O -0.51 -10.69 15.73 -18.75 -0.29 -10.99 16 5 C -0.12 -2.29 6.14 -27.88 -0.17 -2.47 16 6 C 0.11 2.55 3.53 -4.04 -0.01 2.54 16 7 N -0.47 -10.72 2.14 -114.80 -0.25 -10.97 16 8 C -0.35 -8.55 8.93 -14.93 -0.13 -8.68 16 9 H 0.11 2.65 7.44 -52.49 -0.39 2.26 16 10 C 0.07 1.84 5.32 -17.47 -0.09 1.75 16 11 N -0.86 -22.70 13.96 55.50 0.77 -21.93 16 12 Si 0.87 20.55 25.02 -169.99 -4.25 16.30 16 13 H -0.27 -6.45 6.71 56.52 0.38 -6.07 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.26 -6.32 7.11 56.52 0.40 -5.91 16 16 C 0.48 10.60 7.62 -10.98 -0.08 10.52 16 17 O -0.59 -14.23 15.54 5.55 0.09 -14.14 16 18 C -0.12 -2.10 4.35 -27.88 -0.12 -2.23 16 19 C -0.10 -1.50 4.49 -26.73 -0.12 -1.62 16 20 C -0.05 -0.67 5.07 -27.89 -0.14 -0.81 16 21 C -0.16 -2.05 5.76 -36.00 -0.21 -2.26 16 22 S 0.09 1.04 23.33 -107.50 -2.51 -1.47 16 23 C -0.22 -2.39 11.23 29.04 0.33 -2.06 16 24 C -0.13 -1.39 9.98 -41.21 -0.41 -1.80 16 25 C -0.12 -1.43 5.80 -106.25 -0.62 -2.04 16 26 C -0.10 -1.02 9.60 36.01 0.35 -0.67 16 27 H 0.06 0.72 8.13 -51.92 -0.42 0.30 16 28 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 29 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 31 H 0.12 2.11 8.14 -51.93 -0.42 1.69 16 32 H 0.07 1.75 3.37 -51.93 -0.18 1.58 16 33 H 0.08 1.84 7.32 -51.93 -0.38 1.46 16 34 H 0.28 6.91 8.31 -40.82 -0.34 6.57 16 35 H 0.08 1.39 8.04 -51.93 -0.42 0.97 16 36 H 0.09 1.64 7.86 -51.93 -0.41 1.23 16 37 H 0.07 1.11 8.06 -51.93 -0.42 0.69 16 38 H 0.07 1.14 7.82 -51.92 -0.41 0.73 16 39 H 0.08 1.01 7.33 -51.93 -0.38 0.63 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.16 1.30 8.06 -52.48 -0.42 0.87 16 42 H 0.14 1.21 8.06 -52.49 -0.42 0.78 16 43 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 45 H 0.07 0.84 6.95 -51.93 -0.36 0.47 16 LS Contribution 387.26 15.07 5.84 5.84 Total: -1.00 -30.13 387.26 -7.83 -37.96 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -6.72 Total: 4.96 kcal Atomic # 6 Polarization: 0.63 SS G_CDS: -0.09 Total: 0.54 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.53 Total: -32.89 kcal Atomic # 8 Polarization: -30.61 SS G_CDS: -0.62 Total: -31.24 kcal Atomic # 14 Polarization: 20.55 SS G_CDS: -4.25 Total: 16.30 kcal Atomic # 16 Polarization: 1.04 SS G_CDS: -2.51 Total: -1.47 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -30.13 -7.83 -37.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342047.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.547 kcal (2) G-P(sol) polarization free energy of solvation -30.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds