Wall clock time and date at job start Sat Apr 11 2020 05:38:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 O 1.42902 * 109.47102 * 240.00195 * 2 1 3 5 5 C 1.53001 * 109.46859 * 120.00156 * 2 1 3 6 6 H 1.08996 * 110.88566 * 298.67567 * 5 2 1 7 7 C 1.55161 * 111.00149 * 174.79174 * 5 2 1 8 8 C 1.54322 * 102.93944 * 206.42528 * 7 5 2 9 9 N 1.47017 * 107.27102 * 22.19325 * 8 7 5 10 10 S 1.65610 * 125.64328 * 181.02176 * 9 8 7 11 11 O 1.42092 * 106.40417 * 336.48492 * 10 9 8 12 12 O 1.42104 * 106.39748 * 203.56193 * 10 9 8 13 13 C 1.76206 * 107.21721 * 90.02823 * 10 9 8 14 14 C 1.38659 * 119.87304 * 270.27251 * 13 10 9 15 15 C 1.38613 * 120.49942 * 180.27664 * 14 13 10 16 16 C 1.37647 * 120.24664 * 359.70524 * 15 14 13 17 17 C 1.40694 * 119.74307 * 0.02562 * 16 15 14 18 18 C 1.41396 * 120.24125 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00108 * 153.76436 * 18 17 16 20 20 C 1.39945 * 120.00004 * 333.75744 * 18 17 16 21 21 N 1.30828 * 120.00030 * 344.74235 * 20 18 17 22 22 Si 1.86796 * 120.00122 * 164.74096 * 20 18 17 23 23 H 1.48501 * 109.47301 * 60.00253 * 22 20 18 24 24 H 1.48505 * 109.47443 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47311 * 300.00023 * 22 20 18 26 26 C 1.37598 * 119.87377 * 89.99404 * 13 10 9 27 27 C 1.47419 * 108.70509 * 1.28845 * 9 8 7 28 28 H 1.09001 * 109.47497 * 299.99981 * 1 2 3 29 29 H 1.09011 * 109.47023 * 59.99657 * 1 2 3 30 30 H 1.08996 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47263 * 181.84305 * 3 2 1 32 32 H 1.09000 * 109.47306 * 301.84463 * 3 2 1 33 33 H 1.09005 * 109.47116 * 61.84680 * 3 2 1 34 34 H 0.96703 * 113.99823 * 300.00298 * 4 2 1 35 35 H 1.09003 * 110.71960 * 88.06067 * 7 5 2 36 36 H 1.08995 * 110.72078 * 324.79109 * 7 5 2 37 37 H 1.09000 * 109.88006 * 262.77427 * 8 7 5 38 38 H 1.08998 * 109.87916 * 141.61714 * 8 7 5 39 39 H 1.08000 * 119.75322 * 0.02562 * 14 13 10 40 40 H 1.07995 * 119.87546 * 179.72208 * 15 14 13 41 41 H 1.07995 * 120.12733 * 180.02562 * 16 15 14 42 42 H 0.96992 * 119.99665 * 179.97438 * 21 20 18 43 43 H 1.07990 * 120.13115 * 0.02562 * 26 13 10 44 44 H 1.08997 * 110.36747 * 94.48541 * 27 9 8 45 45 H 1.09007 * 110.36283 * 216.80618 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7087 -0.2122 2.1543 7 6 3.5854 -0.8569 1.2212 8 6 3.8381 -2.1095 2.0865 9 7 2.5954 -2.8950 2.0908 10 16 2.3566 -4.3190 2.9019 11 8 3.6431 -4.8896 3.0982 12 8 1.3021 -4.9925 2.2283 13 6 1.7438 -3.9109 4.5028 14 6 2.6299 -3.6958 5.5474 15 6 2.1618 -3.3797 6.8132 16 6 0.8094 -3.2699 7.0449 17 6 -0.0987 -3.4805 5.9911 18 6 -1.4901 -3.3710 6.2175 19 1 -2.1508 -3.1101 5.4038 20 6 -2.0113 -3.6006 7.4958 21 7 -1.2813 -4.1983 8.4022 22 14 -3.7492 -3.0539 7.9080 23 1 -4.7099 -3.7329 7.0017 24 1 -4.0596 -3.4104 9.3158 25 1 -3.8598 -1.5832 7.7345 26 6 0.3879 -3.8012 4.7101 27 6 1.5993 -2.2086 1.2482 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1295 1.4427 -0.0330 32 1 1.6499 1.9658 -0.8730 33 1 1.7039 1.9467 0.9061 34 1 1.7210 -1.5952 -1.2330 35 1 4.0576 0.0198 1.6645 36 1 3.9403 -1.0138 0.2026 37 1 4.0922 -1.8120 3.1039 38 1 4.6481 -2.6992 1.6573 39 1 3.6927 -3.7792 5.3744 40 1 2.8608 -3.2186 7.6205 41 1 0.4468 -3.0231 8.0318 42 1 -1.6424 -4.3571 9.2883 43 1 -0.3002 -3.9651 3.8942 44 1 1.6169 -2.6114 0.2355 45 1 0.6035 -2.3091 1.6801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872674669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:14 Heat of formation + Delta-G solvation = -114.279670 kcal Electronic energy + Delta-G solvation = -28224.709366 eV Core-core repulsion = 24333.304162 eV Total energy + Delta-G solvation = -3891.405204 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.79974 -37.66827 -36.74819 -36.66260 -35.33474 -33.85503 -32.76889 -30.24222 -30.10160 -29.81204 -28.88296 -27.30295 -25.50876 -22.94634 -21.94942 -21.69201 -21.01236 -19.98410 -18.81733 -18.11839 -17.18715 -16.90850 -16.04972 -15.90422 -15.35615 -14.96541 -14.88893 -14.70997 -14.33394 -13.65337 -13.61720 -13.45034 -13.23110 -13.18178 -12.79107 -12.60056 -12.43531 -12.37385 -11.98309 -11.94162 -11.82066 -11.63035 -11.56351 -11.40238 -11.39381 -11.37502 -11.23045 -11.08606 -10.89032 -10.78809 -10.64212 -10.56979 -10.02010 -9.81166 -9.67355 -9.38471 -8.79078 -8.06190 -7.71593 -6.92277 -4.56921 0.90077 2.16781 2.61034 2.97863 2.99904 3.04999 3.46320 3.81129 4.02547 4.22170 4.26214 4.34981 4.45813 4.68752 4.79590 4.91881 5.07048 5.15757 5.24633 5.35520 5.38629 5.44336 5.54574 5.59514 5.66580 5.75888 5.76985 5.82505 5.91639 5.97872 5.99747 6.05014 6.13718 6.21287 6.27552 6.48617 6.61494 6.73605 6.87774 7.02609 7.19114 7.34674 7.48798 7.69078 7.77335 7.91292 8.36989 8.64797 8.68872 10.03378 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.003830 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.600358 B = 7309.229010 C = 8633.821044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.138 3.862 3 C -0.137 4.137 4 O -0.559 6.559 5 C -0.128 4.128 6 H 0.097 0.903 7 C -0.119 4.119 8 C 0.121 3.879 9 N -1.012 6.012 10 S 2.701 3.299 11 O -0.969 6.969 12 O -0.966 6.966 13 C -0.632 4.632 14 C -0.144 4.144 15 C -0.122 4.122 16 C -0.114 4.114 17 C 0.092 3.908 18 C -0.462 4.462 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.797 5.797 22 Si 0.913 3.087 23 H -0.264 1.264 24 H -0.277 1.277 25 H -0.263 1.263 26 C -0.125 4.125 27 C 0.127 3.873 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.376 0.624 35 H 0.078 0.922 36 H 0.085 0.915 37 H 0.067 0.933 38 H 0.069 0.931 39 H 0.105 0.895 40 H 0.099 0.901 41 H 0.126 0.874 42 H 0.284 0.716 43 H 0.110 0.890 44 H 0.064 0.936 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.706 9.847 -11.317 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.097 3.903 3 C -0.194 4.194 4 O -0.367 6.367 5 C -0.148 4.148 6 H 0.115 0.885 7 C -0.158 4.158 8 C -0.005 4.005 9 N -0.848 5.848 10 S 2.799 3.201 11 O -0.960 6.960 12 O -0.957 6.957 13 C -0.724 4.724 14 C -0.166 4.166 15 C -0.142 4.142 16 C -0.134 4.134 17 C 0.089 3.911 18 C -0.491 4.491 19 H 0.099 0.901 20 C -0.143 4.143 21 N -0.423 5.423 22 Si 0.737 3.263 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.188 1.188 26 C -0.147 4.147 27 C 0.001 3.999 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.225 0.775 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.143 0.857 42 H 0.095 0.905 43 H 0.128 0.872 44 H 0.082 0.918 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 5.133 9.387 -11.503 15.709 hybrid contribution -1.342 -0.043 1.241 1.828 sum 3.791 9.345 -10.262 14.387 Atomic orbital electron populations 1.22549 0.95470 1.03079 1.02983 1.21061 0.92614 0.92708 0.83962 1.21739 1.02059 0.93277 1.02359 1.86528 1.77278 1.29163 1.43720 1.23168 0.96486 0.95594 0.99528 0.88505 1.22637 0.95083 0.97124 1.00962 1.21689 0.86072 0.92177 1.00512 1.58707 1.20637 1.42558 1.62937 1.01383 0.73105 0.71588 0.73996 1.93504 1.41085 1.74556 1.86871 1.93525 1.57372 1.70513 1.74299 1.29822 1.03070 1.20157 1.19393 1.20093 0.96652 1.06685 0.93137 1.20827 0.95914 1.01866 0.95548 1.21663 0.91509 0.99914 1.00312 1.17676 0.93758 0.89061 0.90639 1.19556 0.92388 1.41935 0.95261 0.90060 1.25925 1.00320 0.92324 0.95778 1.69757 1.38408 1.28963 1.05122 0.86276 0.81561 0.80267 0.78155 1.18816 1.20214 1.18753 1.20744 0.91686 1.03378 0.98848 1.21981 0.92298 0.91078 0.94524 0.91171 0.91783 0.91801 0.91694 0.92005 0.91083 0.77548 0.90328 0.89691 0.91482 0.91270 0.87663 0.88334 0.85676 0.90503 0.87176 0.91832 0.90159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.57 8.62 37.16 0.32 -1.25 16 2 C 0.14 1.24 0.87 -90.62 -0.08 1.16 16 3 C -0.14 -1.10 8.65 37.16 0.32 -0.78 16 4 O -0.56 -5.38 11.95 -35.23 -0.42 -5.80 16 5 C -0.13 -1.30 2.44 -88.35 -0.22 -1.51 16 6 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 7 C -0.12 -1.17 5.50 -24.90 -0.14 -1.30 16 8 C 0.12 1.50 6.99 -3.07 -0.02 1.48 16 9 N -1.01 -15.04 3.70 -111.30 -0.41 -15.45 16 10 S 2.70 51.90 5.93 -107.50 -0.64 51.26 16 11 O -0.97 -20.25 16.86 -57.17 -0.96 -21.21 16 12 O -0.97 -20.54 16.85 -57.17 -0.96 -21.50 16 13 C -0.63 -13.89 5.97 -39.66 -0.24 -14.12 16 14 C -0.14 -3.15 9.53 -39.29 -0.37 -3.53 16 15 C -0.12 -2.74 10.02 -39.66 -0.40 -3.13 16 16 C -0.11 -2.82 8.68 -38.87 -0.34 -3.16 16 17 C 0.09 2.36 5.56 -106.83 -0.59 1.76 16 18 C -0.46 -11.71 9.06 -37.74 -0.34 -12.06 16 19 H 0.08 1.96 7.89 -52.48 -0.41 1.54 16 20 C 0.07 1.79 5.18 -17.34 -0.09 1.70 16 21 N -0.80 -19.84 10.92 55.55 0.61 -19.23 16 22 Si 0.91 17.90 29.59 -169.99 -5.03 12.87 16 23 H -0.26 -5.14 7.11 56.52 0.40 -4.74 16 24 H -0.28 -5.31 7.11 56.52 0.40 -4.90 16 25 H -0.26 -5.07 7.11 56.52 0.40 -4.66 16 26 C -0.13 -2.99 9.26 -38.87 -0.36 -3.35 16 27 C 0.13 1.56 5.42 -2.41 -0.01 1.55 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.52 8.14 -51.92 -0.42 0.10 16 30 H 0.06 0.55 7.31 -51.93 -0.38 0.17 16 31 H 0.06 0.52 7.53 -51.93 -0.39 0.13 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.38 2.87 7.02 45.56 0.32 3.19 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.08 0.81 7.22 -51.93 -0.37 0.44 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.11 2.08 7.61 -52.49 -0.40 1.68 16 40 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 41 H 0.13 3.14 6.20 -52.49 -0.33 2.82 16 42 H 0.28 6.43 8.30 -40.82 -0.34 6.09 16 43 H 0.11 2.51 7.60 -52.49 -0.40 2.11 16 44 H 0.06 0.67 6.12 -51.93 -0.32 0.35 16 45 H 0.08 1.04 8.04 -51.93 -0.42 0.62 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -30.84 372.88 -10.79 -41.63 By element: Atomic # 1 Polarization: 14.39 SS G_CDS: -6.04 Total: 8.36 kcal Atomic # 6 Polarization: -33.99 SS G_CDS: -2.56 Total: -36.54 kcal Atomic # 7 Polarization: -34.88 SS G_CDS: 0.20 Total: -34.68 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -2.35 Total: -48.51 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.87 kcal Atomic # 16 Polarization: 51.90 SS G_CDS: -0.64 Total: 51.26 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -30.84 -10.79 -41.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872674669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.648 kcal (2) G-P(sol) polarization free energy of solvation -30.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds