Wall clock time and date at job start Sat Apr 11 2020 05:38:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47088 * 2 1 4 4 O 1.42902 * 109.47102 * 240.00195 * 2 1 3 5 5 C 1.53001 * 109.46859 * 120.00156 * 2 1 3 6 6 H 1.08996 * 110.88566 * 298.67567 * 5 2 1 7 7 C 1.55161 * 111.00149 * 174.79174 * 5 2 1 8 8 C 1.54322 * 102.93944 * 206.42528 * 7 5 2 9 9 N 1.47017 * 107.27102 * 22.19325 * 8 7 5 10 10 S 1.65610 * 125.64328 * 181.02176 * 9 8 7 11 11 O 1.42092 * 106.40417 * 336.48492 * 10 9 8 12 12 O 1.42104 * 106.39748 * 203.56193 * 10 9 8 13 13 C 1.76206 * 107.21721 * 90.02823 * 10 9 8 14 14 C 1.38659 * 119.87304 * 270.27251 * 13 10 9 15 15 C 1.38613 * 120.49942 * 180.27664 * 14 13 10 16 16 C 1.37647 * 120.24664 * 359.70524 * 15 14 13 17 17 C 1.40694 * 119.74307 * 0.02562 * 16 15 14 18 18 C 1.41396 * 120.24125 * 179.97438 * 17 16 15 19 19 H 1.08005 * 120.00108 * 153.76436 * 18 17 16 20 20 C 1.39945 * 120.00004 * 333.75744 * 18 17 16 21 21 N 1.30828 * 120.00030 * 344.74235 * 20 18 17 22 22 Si 1.86796 * 120.00122 * 164.74096 * 20 18 17 23 23 H 1.48501 * 109.47301 * 60.00253 * 22 20 18 24 24 H 1.48505 * 109.47443 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47311 * 300.00023 * 22 20 18 26 26 C 1.37598 * 119.87377 * 89.99404 * 13 10 9 27 27 C 1.47419 * 108.70509 * 1.28845 * 9 8 7 28 28 H 1.09001 * 109.47497 * 299.99981 * 1 2 3 29 29 H 1.09011 * 109.47023 * 59.99657 * 1 2 3 30 30 H 1.08996 * 109.47394 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47263 * 181.84305 * 3 2 1 32 32 H 1.09000 * 109.47306 * 301.84463 * 3 2 1 33 33 H 1.09005 * 109.47116 * 61.84680 * 3 2 1 34 34 H 0.96703 * 113.99823 * 300.00298 * 4 2 1 35 35 H 1.09003 * 110.71960 * 88.06067 * 7 5 2 36 36 H 1.08995 * 110.72078 * 324.79109 * 7 5 2 37 37 H 1.09000 * 109.88006 * 262.77427 * 8 7 5 38 38 H 1.08998 * 109.87916 * 141.61714 * 8 7 5 39 39 H 1.08000 * 119.75322 * 0.02562 * 14 13 10 40 40 H 1.07995 * 119.87546 * 179.72208 * 15 14 13 41 41 H 1.07995 * 120.12733 * 180.02562 * 16 15 14 42 42 H 0.96992 * 119.99665 * 179.97438 * 21 20 18 43 43 H 1.07990 * 120.13115 * 0.02562 * 26 13 10 44 44 H 1.08997 * 110.36747 * 94.48541 * 27 9 8 45 45 H 1.09007 * 110.36283 * 216.80618 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2492 6 1 1.7087 -0.2122 2.1543 7 6 3.5854 -0.8569 1.2212 8 6 3.8381 -2.1095 2.0865 9 7 2.5954 -2.8950 2.0908 10 16 2.3566 -4.3190 2.9019 11 8 3.6431 -4.8896 3.0982 12 8 1.3021 -4.9925 2.2283 13 6 1.7438 -3.9109 4.5028 14 6 2.6299 -3.6958 5.5474 15 6 2.1618 -3.3797 6.8132 16 6 0.8094 -3.2699 7.0449 17 6 -0.0987 -3.4805 5.9911 18 6 -1.4901 -3.3710 6.2175 19 1 -2.1508 -3.1101 5.4038 20 6 -2.0113 -3.6006 7.4958 21 7 -1.2813 -4.1983 8.4022 22 14 -3.7492 -3.0539 7.9080 23 1 -4.7099 -3.7329 7.0017 24 1 -4.0596 -3.4104 9.3158 25 1 -3.8598 -1.5832 7.7345 26 6 0.3879 -3.8012 4.7101 27 6 1.5993 -2.2086 1.2482 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 3.1295 1.4427 -0.0330 32 1 1.6499 1.9658 -0.8730 33 1 1.7039 1.9467 0.9061 34 1 1.7210 -1.5952 -1.2330 35 1 4.0576 0.0198 1.6645 36 1 3.9403 -1.0138 0.2026 37 1 4.0922 -1.8120 3.1039 38 1 4.6481 -2.6992 1.6573 39 1 3.6927 -3.7792 5.3744 40 1 2.8608 -3.2186 7.6205 41 1 0.4468 -3.0231 8.0318 42 1 -1.6424 -4.3571 9.2883 43 1 -0.3002 -3.9651 3.8942 44 1 1.6169 -2.6114 0.2355 45 1 0.6035 -2.3091 1.6801 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000872674669.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:13 Heat of formation + Delta-G solvation = -134.979778 kcal Electronic energy + Delta-G solvation = -28225.606990 eV Core-core repulsion = 24333.304162 eV Total energy + Delta-G solvation = -3892.302828 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.64065 -39.47589 -38.34471 -37.59884 -36.97383 -35.67590 -33.53112 -31.94047 -31.62641 -31.16534 -29.77816 -28.00444 -27.36387 -24.01685 -23.52673 -22.87948 -22.63263 -20.75510 -20.32016 -19.61986 -18.64895 -17.95727 -17.60465 -17.12497 -16.90584 -16.51587 -16.30789 -15.68840 -15.33138 -15.30959 -15.05618 -14.52228 -14.44469 -14.30339 -14.16162 -13.75453 -13.57307 -13.33525 -13.30513 -13.25752 -13.10509 -13.07286 -12.98631 -12.88266 -12.76177 -12.60397 -12.55220 -12.41038 -12.22969 -12.09546 -11.61213 -11.58896 -11.44853 -11.30302 -11.16206 -10.76029 -10.01992 -9.84677 -9.57407 -8.72624 -6.48095 -0.62500 0.37310 0.81533 1.36797 1.46135 1.49267 2.04230 2.17129 2.55018 2.73991 3.16438 3.34087 3.44940 3.52102 3.72316 3.88546 4.13264 4.20986 4.26743 4.32686 4.37280 4.39895 4.48119 4.63044 4.79692 4.81433 4.84174 4.86723 4.93399 4.96285 4.98826 5.05460 5.06969 5.09784 5.17946 5.19456 5.30989 5.36240 5.39939 5.47736 5.49112 5.53904 5.85314 5.91341 6.07427 6.49989 6.78336 6.81982 6.85285 8.25308 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.011869 B = 0.003830 C = 0.003242 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2358.600358 B = 7309.229010 C = 8633.821044 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.142 3.858 3 C -0.138 4.138 4 O -0.568 6.568 5 C -0.121 4.121 6 H 0.093 0.907 7 C -0.108 4.108 8 C 0.109 3.891 9 N -1.007 6.007 10 S 2.728 3.272 11 O -0.984 6.984 12 O -0.989 6.989 13 C -0.640 4.640 14 C -0.147 4.147 15 C -0.123 4.123 16 C -0.137 4.137 17 C 0.064 3.936 18 C -0.497 4.497 19 H 0.082 0.918 20 C 0.035 3.965 21 N -0.828 5.828 22 Si 0.986 3.014 23 H -0.261 1.261 24 H -0.267 1.267 25 H -0.256 1.256 26 C -0.143 4.143 27 C 0.114 3.886 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.059 0.941 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.079 0.921 34 H 0.383 0.617 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.129 0.871 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.291 0.709 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.212 11.240 -12.198 17.387 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.101 3.899 3 C -0.195 4.195 4 O -0.376 6.376 5 C -0.141 4.141 6 H 0.112 0.888 7 C -0.147 4.147 8 C -0.016 4.016 9 N -0.847 5.847 10 S 2.823 3.177 11 O -0.975 6.975 12 O -0.980 6.980 13 C -0.729 4.729 14 C -0.168 4.168 15 C -0.142 4.142 16 C -0.157 4.157 17 C 0.061 3.939 18 C -0.527 4.527 19 H 0.100 0.900 20 C -0.180 4.180 21 N -0.454 5.454 22 Si 0.806 3.194 23 H -0.185 1.185 24 H -0.192 1.192 25 H -0.180 1.180 26 C -0.164 4.164 27 C -0.011 4.011 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.078 0.922 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.098 0.902 34 H 0.233 0.767 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.102 0.898 43 H 0.127 0.873 44 H 0.102 0.898 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.642 10.774 -12.357 17.338 hybrid contribution -1.379 -0.476 1.417 2.034 sum 4.263 10.298 -10.939 15.617 Atomic orbital electron populations 1.22560 0.95373 1.02970 1.03286 1.21056 0.92677 0.93057 0.83120 1.21766 1.02255 0.92513 1.02953 1.86520 1.77424 1.29861 1.43828 1.23141 0.96865 0.93939 1.00159 0.88837 1.22629 0.94669 0.96463 1.00953 1.22013 0.84991 0.93101 1.01457 1.58377 1.22328 1.41995 1.61980 1.00498 0.72102 0.72157 0.72909 1.93476 1.41337 1.75708 1.86958 1.93489 1.58320 1.71994 1.74185 1.30335 1.02456 1.18514 1.21612 1.20454 0.97866 1.05664 0.92816 1.21154 0.95531 1.00753 0.96794 1.21667 0.92600 1.01624 0.99791 1.18038 0.94477 0.89737 0.91663 1.19843 0.92733 1.43664 0.96411 0.90037 1.26781 1.04505 0.91640 0.95050 1.69809 1.40390 1.29516 1.05697 0.85193 0.76106 0.79935 0.78184 1.18514 1.19165 1.18037 1.20818 0.92773 1.04417 0.98427 1.22299 0.91291 0.92616 0.94886 0.91122 0.91248 0.92169 0.91392 0.91803 0.90216 0.76718 0.88279 0.88951 0.91312 0.90564 0.85308 0.85493 0.86787 0.89782 0.87264 0.89822 0.91237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.89 8.62 71.98 0.62 -2.27 16 2 C 0.14 2.25 0.87 -10.79 -0.01 2.24 16 3 C -0.14 -1.87 8.65 71.98 0.62 -1.25 16 4 O -0.57 -9.59 11.95 -148.98 -1.78 -11.37 16 5 C -0.12 -2.22 2.44 -9.32 -0.02 -2.24 16 6 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 7 C -0.11 -1.82 5.50 31.78 0.17 -1.64 16 8 C 0.11 2.46 6.99 86.73 0.61 3.07 16 9 N -1.01 -28.69 3.70 -506.05 -1.87 -30.56 16 10 S 2.73 103.50 5.93 -56.49 -0.34 103.16 16 11 O -0.98 -40.04 16.86 -128.00 -2.16 -42.20 16 12 O -0.99 -42.13 16.85 -128.00 -2.16 -44.28 16 13 C -0.64 -28.23 5.97 22.22 0.13 -28.10 16 14 C -0.15 -6.33 9.53 22.46 0.21 -6.12 16 15 C -0.12 -5.50 10.02 22.22 0.22 -5.28 16 16 C -0.14 -6.95 8.68 22.73 0.20 -6.75 16 17 C 0.06 3.39 5.56 -21.29 -0.12 3.27 16 18 C -0.50 -26.06 9.06 23.46 0.21 -25.84 16 19 H 0.08 4.08 7.89 -2.91 -0.02 4.05 16 20 C 0.04 1.72 5.18 85.26 0.44 2.16 16 21 N -0.83 -42.08 10.92 21.83 0.24 -41.84 16 22 Si 0.99 36.79 29.59 68.60 2.03 38.82 16 23 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 24 H -0.27 -9.45 7.11 99.48 0.71 -8.74 16 25 H -0.26 -9.21 7.11 99.48 0.71 -8.50 16 26 C -0.14 -7.04 9.26 22.73 0.21 -6.83 16 27 C 0.11 2.67 5.42 86.93 0.47 3.14 16 28 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.06 0.97 7.31 -2.39 -0.02 0.96 16 31 H 0.07 0.89 7.53 -2.39 -0.02 0.87 16 32 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 33 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.38 5.03 7.02 -74.06 -0.52 4.51 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.09 1.46 7.22 -2.39 -0.02 1.45 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.13 4.86 7.61 -2.91 -0.02 4.84 16 40 H 0.13 4.80 8.06 -2.91 -0.02 4.78 16 41 H 0.11 5.93 6.20 -2.91 -0.02 5.92 16 42 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 43 H 0.11 5.20 7.60 -2.92 -0.02 5.18 16 44 H 0.08 1.62 6.12 -2.39 -0.01 1.61 16 45 H 0.07 1.78 8.04 -2.38 -0.02 1.76 16 Total: -1.00 -66.66 372.88 -1.57 -68.24 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.48 Total: 32.47 kcal Atomic # 6 Polarization: -76.41 SS G_CDS: 3.98 Total: -72.44 kcal Atomic # 7 Polarization: -70.77 SS G_CDS: -1.63 Total: -72.40 kcal Atomic # 8 Polarization: -91.76 SS G_CDS: -6.09 Total: -97.85 kcal Atomic # 14 Polarization: 36.79 SS G_CDS: 2.03 Total: 38.82 kcal Atomic # 16 Polarization: 103.50 SS G_CDS: -0.34 Total: 103.16 kcal Total: -66.66 -1.57 -68.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872674669.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.745 kcal (2) G-P(sol) polarization free energy of solvation -66.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds