Wall clock time and date at job start Sat Apr 11 2020 05:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47267 * 2 1 4 4 O 1.42903 * 109.47181 * 240.00054 * 2 1 3 5 5 C 1.53005 * 109.47181 * 120.00148 * 2 1 3 6 6 H 1.08999 * 110.88710 * 303.88025 * 5 2 1 7 7 C 1.55161 * 111.00102 * 67.80297 * 5 2 1 8 8 C 1.54336 * 103.01564 * 153.38205 * 7 5 2 9 9 N 1.47015 * 107.26656 * 338.13842 * 8 7 5 10 10 S 1.65607 * 125.64774 * 178.85294 * 9 8 7 11 11 O 1.42096 * 106.40425 * 162.96006 * 10 9 8 12 12 O 1.42100 * 106.40257 * 30.03586 * 10 9 8 13 13 C 1.76206 * 107.21475 * 276.50190 * 10 9 8 14 14 C 1.37641 * 120.13046 * 114.70688 * 13 10 9 15 15 C 1.38611 * 120.24651 * 180.29664 * 14 13 10 16 16 C 1.38654 * 120.49974 * 359.67167 * 15 14 13 17 17 C 1.37588 * 120.25429 * 0.02562 * 16 15 14 18 18 C 1.40697 * 120.12627 * 294.39730 * 13 10 9 19 19 C 1.41395 * 120.24400 * 0.02562 * 18 13 10 20 20 H 1.08006 * 120.00092 * 330.23711 * 19 18 13 21 21 C 1.39949 * 120.00414 * 150.23759 * 19 18 13 22 22 N 1.30825 * 119.99593 * 336.10129 * 21 19 18 23 23 Si 1.86793 * 120.00440 * 155.82364 * 21 19 18 24 24 H 1.48508 * 109.46923 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47326 * 120.00009 * 23 21 19 26 26 H 1.48499 * 109.47431 * 240.00364 * 23 21 19 27 27 C 1.47419 * 108.70456 * 358.58785 * 9 8 7 28 28 H 1.09003 * 109.47021 * 299.99979 * 1 2 3 29 29 H 1.08998 * 109.47095 * 59.99920 * 1 2 3 30 30 H 1.08990 * 109.47195 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.47364 * 180.02562 * 3 2 1 32 32 H 1.09002 * 109.47780 * 300.00373 * 3 2 1 33 33 H 1.09003 * 109.47083 * 60.00059 * 3 2 1 34 34 H 0.96701 * 113.99625 * 300.00333 * 4 2 1 35 35 H 1.09002 * 110.71904 * 271.93752 * 7 5 2 36 36 H 1.08998 * 110.72271 * 35.03331 * 7 5 2 37 37 H 1.09000 * 109.98817 * 218.66151 * 8 7 5 38 38 H 1.09006 * 109.77735 * 97.49965 * 8 7 5 39 39 H 1.08002 * 119.87255 * 359.96466 * 14 13 10 40 40 H 1.07999 * 119.74520 * 179.69253 * 15 14 13 41 41 H 1.08007 * 119.87217 * 180.02562 * 16 15 14 42 42 H 1.08003 * 120.13319 * 180.02562 * 17 16 15 43 43 H 0.97000 * 119.99763 * 353.95512 * 22 21 19 44 44 H 1.09002 * 110.36634 * 143.19541 * 27 9 8 45 45 H 1.09008 * 110.36716 * 265.40450 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 2.0064 -0.6736 -1.1668 5 6 2.0400 -0.7213 1.2493 6 1 1.6344 -0.2670 2.1532 7 6 1.7095 -2.2361 1.1906 8 6 2.8135 -2.8670 2.0654 9 7 3.9312 -1.9131 2.1125 10 16 5.3442 -2.1226 2.9505 11 8 6.2717 -1.1902 2.4126 12 8 5.5836 -3.5227 2.9896 13 6 5.0434 -1.6226 4.6131 14 6 5.0986 -2.5455 5.6328 15 6 4.8564 -2.1560 6.9409 16 6 4.5630 -0.8340 7.2386 17 6 4.5086 0.1068 6.2361 18 6 4.7524 -0.2772 4.9043 19 6 4.6990 0.6808 3.8657 20 1 5.3080 0.5545 2.9827 21 6 3.8570 1.7926 3.9819 22 7 2.8098 1.7411 4.7643 23 14 4.2328 3.3527 3.0259 24 1 5.4673 3.1567 2.2241 25 1 3.0984 3.6631 2.1192 26 1 4.4312 4.4785 3.9737 27 6 3.5885 -0.7421 1.2851 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 3.1301 1.4424 -0.0005 32 1 1.6767 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.7210 -1.5952 -1.2329 35 1 0.7227 -2.4320 1.6102 36 1 1.7718 -2.6052 0.1669 37 1 3.1464 -3.8067 1.6249 38 1 2.4322 -3.0414 3.0716 39 1 5.3262 -3.5780 5.4122 40 1 4.8969 -2.8878 7.7341 41 1 4.3764 -0.5416 8.2615 42 1 4.2803 1.1361 6.4703 43 1 2.5670 0.9067 5.1953 44 1 3.9697 0.1707 1.7432 45 1 3.9915 -0.8575 0.2788 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000872675697.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:22 Heat of formation + Delta-G solvation = -118.671701 kcal Electronic energy + Delta-G solvation = -29855.396674 eV Core-core repulsion = 25963.801017 eV Total energy + Delta-G solvation = -3891.595657 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.49304 -37.87239 -36.38445 -36.36823 -34.94104 -34.14670 -32.46012 -30.28108 -29.97773 -29.50508 -28.46993 -27.01356 -25.40140 -22.48809 -21.87816 -21.60282 -21.21906 -19.65762 -18.50057 -18.07774 -17.23164 -16.69972 -16.16945 -15.75036 -14.97118 -14.86758 -14.47965 -14.21101 -14.09841 -13.92580 -13.37147 -13.26168 -13.04932 -12.90490 -12.66790 -12.37511 -12.31963 -12.19816 -12.06863 -11.78247 -11.61207 -11.42237 -11.31109 -11.25392 -11.16182 -11.07389 -10.92032 -10.87613 -10.58647 -10.52793 -10.47481 -10.28790 -9.90451 -9.69538 -9.40196 -9.20846 -8.38269 -8.22081 -7.85617 -7.51096 -4.89642 1.40498 2.19232 2.59847 3.01642 3.10800 3.25584 3.78472 3.83798 4.26605 4.29113 4.58397 4.67652 4.70335 4.96145 5.08009 5.10935 5.23952 5.33045 5.45253 5.66389 5.73005 5.73670 5.87131 5.87220 5.88038 5.92768 5.99045 6.01695 6.10376 6.18030 6.22212 6.26462 6.32386 6.44493 6.56168 6.59782 6.71819 6.85059 7.03780 7.11804 7.25389 7.37299 7.54324 7.63539 7.73078 7.78163 7.94651 8.35309 8.53867 9.71767 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.010596 B = 0.006696 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2641.907533 B = 4180.524838 C = 5562.890096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.138 3.862 3 C -0.145 4.145 4 O -0.558 6.558 5 C -0.124 4.124 6 H 0.097 0.903 7 C -0.125 4.125 8 C 0.127 3.873 9 N -1.004 6.004 10 S 2.720 3.280 11 O -0.969 6.969 12 O -0.995 6.995 13 C -0.781 4.781 14 C 0.011 3.989 15 C -0.261 4.261 16 C -0.056 4.056 17 C -0.209 4.209 18 C 0.172 3.828 19 C -0.526 4.526 20 H 0.115 0.885 21 C 0.048 3.952 22 N -0.776 5.776 23 Si 1.049 2.951 24 H -0.265 1.265 25 H -0.268 1.268 26 H -0.271 1.271 27 C 0.125 3.875 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.057 0.943 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.076 0.924 34 H 0.370 0.630 35 H 0.076 0.924 36 H 0.070 0.930 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.110 0.890 43 H 0.302 0.698 44 H 0.098 0.902 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.122 -1.742 -6.759 9.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.097 3.903 3 C -0.202 4.202 4 O -0.365 6.365 5 C -0.144 4.144 6 H 0.115 0.885 7 C -0.164 4.164 8 C 0.001 3.999 9 N -0.840 5.840 10 S 2.820 3.180 11 O -0.959 6.959 12 O -0.986 6.986 13 C -0.876 4.876 14 C -0.009 4.009 15 C -0.282 4.282 16 C -0.075 4.075 17 C -0.229 4.229 18 C 0.167 3.833 19 C -0.553 4.553 20 H 0.133 0.867 21 C -0.177 4.177 22 N -0.398 5.398 23 Si 0.871 3.129 24 H -0.189 1.189 25 H -0.193 1.193 26 H -0.196 1.196 27 C 0.000 4.000 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.094 0.906 34 H 0.219 0.781 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.127 0.873 40 H 0.115 0.885 41 H 0.114 0.886 42 H 0.128 0.872 43 H 0.116 0.884 44 H 0.116 0.884 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.531 0.042 -7.426 9.890 hybrid contribution -0.287 -1.924 1.465 2.435 sum -6.818 -1.882 -5.961 9.250 Atomic orbital electron populations 1.22467 0.95846 1.02235 1.02741 1.21061 0.92238 0.92919 0.84034 1.21855 1.02657 0.93193 1.02513 1.86574 1.77420 1.28626 1.43859 1.23063 0.96827 0.95238 0.99253 0.88505 1.22665 0.98491 0.95422 0.99815 1.21518 0.86620 0.91976 0.99800 1.58505 1.34277 1.27904 1.63312 1.00507 0.71555 0.72092 0.73873 1.93479 1.59192 1.63913 1.79354 1.93437 1.84247 1.32641 1.88233 1.29904 1.35941 1.01834 1.19941 1.20325 0.91166 0.96694 0.92667 1.20465 1.15877 0.96107 0.95713 1.20842 0.95655 0.93631 0.97398 1.21341 1.10124 0.98432 0.92965 1.17013 0.84568 0.89028 0.92646 1.21461 1.22434 1.05615 1.05760 0.86735 1.27047 0.92085 1.02746 0.95830 1.70418 1.19359 1.32209 1.17771 0.83893 0.78017 0.74045 0.76964 1.18917 1.19271 1.19582 1.22182 0.93738 0.89399 0.94646 0.91382 0.92025 0.92418 0.91324 0.92118 0.90556 0.78145 0.90503 0.91176 0.91731 0.92056 0.87335 0.88490 0.88626 0.87232 0.88450 0.88397 0.91692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.68 37.16 0.32 -1.50 16 2 C 0.14 1.74 0.87 -90.62 -0.08 1.66 16 3 C -0.15 -1.96 8.62 37.15 0.32 -1.64 16 4 O -0.56 -6.94 12.13 -35.23 -0.43 -7.37 16 5 C -0.12 -1.77 2.43 -88.47 -0.21 -1.99 16 6 H 0.10 1.54 8.14 -51.93 -0.42 1.12 16 7 C -0.13 -1.51 5.57 -24.89 -0.14 -1.65 16 8 C 0.13 1.95 7.06 -3.06 -0.02 1.93 16 9 N -1.00 -18.93 3.64 -111.42 -0.41 -19.33 16 10 S 2.72 61.00 5.29 -107.50 -0.57 60.43 16 11 O -0.97 -23.98 15.14 -57.17 -0.87 -24.85 16 12 O -0.99 -23.13 16.64 -57.17 -0.95 -24.08 16 13 C -0.78 -18.57 5.97 -38.87 -0.23 -18.81 16 14 C 0.01 0.26 9.54 -39.66 -0.38 -0.12 16 15 C -0.26 -5.61 10.05 -39.29 -0.39 -6.00 16 16 C -0.06 -1.23 10.02 -39.67 -0.40 -1.62 16 17 C -0.21 -4.97 7.96 -38.88 -0.31 -5.28 16 18 C 0.17 4.25 5.21 -106.82 -0.56 3.69 16 19 C -0.53 -12.62 6.23 -37.74 -0.24 -12.86 16 20 H 0.12 2.84 4.42 -52.48 -0.23 2.61 16 21 C 0.05 1.07 4.88 -17.34 -0.08 0.99 16 22 N -0.78 -17.86 12.43 55.55 0.69 -17.17 16 23 Si 1.05 19.73 30.00 -169.99 -5.10 14.63 16 24 H -0.27 -4.97 7.11 56.52 0.40 -4.57 16 25 H -0.27 -4.59 7.11 56.52 0.40 -4.18 16 26 H -0.27 -5.06 7.11 56.52 0.40 -4.65 16 27 C 0.13 2.21 4.98 -2.53 -0.01 2.19 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.52 7.56 -51.93 -0.39 0.12 16 31 H 0.07 0.99 7.23 -51.93 -0.38 0.62 16 32 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 34 H 0.37 3.45 6.85 45.56 0.31 3.77 16 35 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 36 H 0.07 0.69 5.93 -51.93 -0.31 0.38 16 37 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.11 2.28 7.32 -52.49 -0.38 1.89 16 40 H 0.10 1.81 8.06 -52.49 -0.42 1.39 16 41 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 42 H 0.11 2.62 6.76 -52.48 -0.35 2.26 16 43 H 0.30 7.17 6.77 -40.82 -0.28 6.89 16 44 H 0.10 1.92 4.81 -51.93 -0.25 1.67 16 45 H 0.06 1.11 7.41 -51.92 -0.38 0.72 16 LS Contribution 360.96 15.07 5.44 5.44 Total: -1.00 -28.78 360.96 -10.27 -39.05 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -5.67 Total: 14.25 kcal Atomic # 6 Polarization: -38.58 SS G_CDS: -2.41 Total: -40.99 kcal Atomic # 7 Polarization: -36.79 SS G_CDS: 0.28 Total: -36.50 kcal Atomic # 8 Polarization: -54.05 SS G_CDS: -2.24 Total: -56.30 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.10 Total: 14.63 kcal Atomic # 16 Polarization: 61.00 SS G_CDS: -0.57 Total: 60.43 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.78 -10.27 -39.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000872675697.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.622 kcal (2) G-P(sol) polarization free energy of solvation -28.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds