Wall clock time and date at job start Sat Apr 11 2020 05:38:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 116.99841 * 2 1 4 4 O 1.20831 * 120.00323 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00058 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46897 * 60.00163 * 5 3 2 7 7 C 1.52998 * 109.46958 * 299.99858 * 5 3 2 8 8 C 1.52997 * 109.46946 * 175.00070 * 7 5 3 9 9 C 1.53007 * 109.47012 * 174.99836 * 8 7 5 10 10 C 1.52997 * 109.47251 * 294.99972 * 8 7 5 11 11 N 1.46495 * 109.46983 * 179.97438 * 5 3 2 12 12 C 1.46503 * 119.99838 * 60.00113 * 11 5 3 13 13 C 1.34779 * 120.00432 * 239.99565 * 11 5 3 14 14 O 1.21757 * 119.99488 * 5.36545 * 13 11 5 15 15 C 1.46238 * 120.00567 * 185.35961 * 13 11 5 16 16 S 1.75669 * 125.22309 * 8.03370 * 15 13 11 17 17 C 1.75476 * 92.08662 * 179.97438 * 16 15 13 18 18 C 1.32760 * 111.36686 * 0.02562 * 17 16 15 19 19 C 1.39539 * 125.23142 * 187.73129 * 15 13 11 20 20 C 1.40545 * 123.71238 * 359.97438 * 19 15 13 21 21 H 1.08000 * 119.99726 * 329.72066 * 20 19 15 22 22 C 1.40308 * 120.00068 * 149.71707 * 20 19 15 23 23 N 1.30633 * 120.00012 * 167.95441 * 22 20 19 24 24 Si 1.86799 * 119.99966 * 347.96430 * 22 20 19 25 25 H 1.48497 * 109.47589 * 86.31920 * 24 22 20 26 26 H 1.48496 * 109.47107 * 206.32781 * 24 22 20 27 27 H 1.48504 * 109.47013 * 326.31883 * 24 22 20 28 28 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47141 * 299.99871 * 1 2 3 30 30 H 1.08995 * 109.47929 * 60.00156 * 1 2 3 31 31 H 1.09005 * 109.47088 * 295.00264 * 7 5 3 32 32 H 1.09000 * 109.47394 * 54.99842 * 7 5 3 33 33 H 1.08997 * 109.47253 * 55.00341 * 8 7 5 34 34 H 1.08997 * 109.46699 * 60.00166 * 9 8 7 35 35 H 1.08997 * 109.47021 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.46862 * 300.00088 * 9 8 7 37 37 H 1.09006 * 109.46889 * 299.99925 * 10 8 7 38 38 H 1.09000 * 109.47422 * 59.99972 * 10 8 7 39 39 H 1.08997 * 109.47458 * 180.02562 * 10 8 7 40 40 H 1.09004 * 109.46972 * 95.56782 * 12 11 5 41 41 H 1.09004 * 109.46756 * 215.56436 * 12 11 5 42 42 H 1.08993 * 109.47672 * 335.56424 * 12 11 5 43 43 H 1.08003 * 124.31496 * 179.97438 * 17 16 15 44 44 H 1.07997 * 122.78703 * 179.97438 * 18 17 16 45 45 H 0.97000 * 119.99923 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 6 4.1138 0.5811 1.2483 8 6 5.6423 0.5514 1.1864 9 6 6.1942 -0.0291 2.4901 10 6 6.0882 -0.3203 0.0108 11 7 3.9816 2.6798 -0.0011 12 6 3.5813 3.5623 1.0977 13 6 4.7320 3.1604 -1.0122 14 8 4.9828 2.4552 -1.9726 15 6 5.2448 4.5288 -0.9560 16 16 5.1399 5.5936 0.4372 17 6 5.9634 6.8902 -0.4113 18 6 6.2849 6.5312 -1.6484 19 6 5.8977 5.1872 -1.9987 20 6 6.1477 4.6054 -3.2535 21 1 6.2994 3.5391 -3.3336 22 6 6.2001 5.4098 -4.4018 23 7 6.6598 4.9198 -5.5221 24 14 5.6128 7.1815 -4.3287 25 1 6.7256 8.0536 -3.8744 26 1 5.1664 7.6111 -5.6783 27 1 4.4793 7.2883 -3.3752 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 3.7967 1.1280 2.1363 32 1 3.7321 -0.4388 1.2942 33 1 6.0202 1.5647 1.0513 34 1 5.8163 -1.0425 2.6252 35 1 7.2831 -0.0507 2.4458 36 1 5.8765 0.5919 3.3275 37 1 5.7102 -1.3338 0.1461 38 1 5.6950 0.0932 -0.9179 39 1 7.1771 -0.3419 -0.0330 40 1 4.3801 3.6059 1.8381 41 1 3.3910 4.5628 0.7091 42 1 2.6751 3.1749 1.5632 43 1 6.1803 7.8573 0.0178 44 1 6.7976 7.1896 -2.3339 45 1 6.6957 5.4758 -6.3162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875759168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:33 Heat of formation + Delta-G solvation = -96.823279 kcal Electronic energy + Delta-G solvation = -28665.306974 eV Core-core repulsion = 24774.658736 eV Total energy + Delta-G solvation = -3890.648238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.64868 -38.81855 -36.88715 -36.28579 -35.90563 -34.10760 -33.30909 -30.78856 -29.05803 -27.62748 -27.02174 -26.55236 -26.25499 -24.21420 -22.09986 -21.15506 -20.14338 -19.38180 -18.63949 -17.74197 -16.98429 -16.64656 -16.39285 -16.06849 -15.56435 -15.16798 -14.80653 -14.34170 -14.25958 -13.79221 -13.64956 -13.43930 -13.25604 -13.20154 -12.64265 -12.48585 -12.34924 -12.25641 -12.11591 -12.02638 -11.96224 -11.74906 -11.48490 -11.45945 -11.14393 -10.89646 -10.75931 -10.68889 -10.49500 -10.45162 -10.37717 -10.11743 -10.04882 -9.42412 -9.36319 -8.59987 -8.11567 -7.65235 -7.27221 -7.12975 -4.56459 1.87383 2.33234 2.65987 2.88741 2.92883 3.06706 3.09875 3.42527 3.52436 3.69300 3.79839 4.29709 4.67866 4.93349 5.03104 5.06577 5.09205 5.14164 5.17578 5.35348 5.46763 5.52637 5.60147 5.71735 5.79233 5.81088 5.85727 5.90010 5.98790 6.03381 6.11861 6.16630 6.26133 6.33011 6.43523 6.49771 6.58197 6.62807 6.79612 6.94219 7.00953 7.22085 7.62889 7.88501 8.20251 8.27039 8.41960 8.73110 9.39238 9.84042 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.004197 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.918707 B = 6669.415853 C = 6932.464602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.448 3.552 4 O -0.495 6.495 5 C 0.157 3.843 6 H 0.139 0.861 7 C -0.115 4.115 8 C -0.093 4.093 9 C -0.143 4.143 10 C -0.152 4.152 11 N -0.611 5.611 12 C 0.079 3.921 13 C 0.604 3.396 14 O -0.549 6.549 15 C -0.421 4.421 16 S 0.012 5.988 17 C -0.201 4.201 18 C -0.172 4.172 19 C 0.113 3.887 20 C -0.364 4.364 21 H 0.122 0.878 22 C 0.078 3.922 23 N -0.775 5.775 24 Si 0.911 3.089 25 H -0.263 1.263 26 H -0.284 1.284 27 H -0.244 1.244 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.061 0.939 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.051 0.949 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.050 0.950 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.090 0.910 42 H 0.069 0.931 43 H 0.139 0.861 44 H 0.126 0.874 45 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.451 -5.920 12.054 14.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.289 3.711 4 O -0.381 6.381 5 C 0.050 3.950 6 H 0.156 0.844 7 C -0.153 4.153 8 C -0.111 4.111 9 C -0.200 4.200 10 C -0.209 4.209 11 N -0.347 5.347 12 C -0.066 4.066 13 C 0.403 3.597 14 O -0.430 6.430 15 C -0.539 4.539 16 S 0.271 5.729 17 C -0.335 4.335 18 C -0.204 4.204 19 C 0.102 3.898 20 C -0.394 4.394 21 H 0.139 0.861 22 C -0.146 4.146 23 N -0.398 5.398 24 Si 0.737 3.263 25 H -0.189 1.189 26 H -0.210 1.210 27 H -0.167 1.167 28 H 0.117 0.883 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.087 0.913 43 H 0.157 0.843 44 H 0.143 0.857 45 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -6.044 -6.126 12.678 15.323 hybrid contribution 0.067 1.262 -1.454 1.927 sum -5.977 -4.864 11.224 13.615 Atomic orbital electron populations 1.23212 0.76932 1.03328 1.02418 1.86524 1.23001 1.33799 1.84341 1.24690 0.92773 0.81370 0.72234 1.90655 1.66885 1.36221 1.44355 1.20472 0.85329 0.86039 1.03145 0.84387 1.21950 0.96717 1.00638 0.96013 1.21033 0.93698 1.01008 0.95403 1.21804 1.00840 1.00459 0.96884 1.21913 1.01274 0.98936 0.98772 1.47333 1.54617 1.07796 1.24927 1.21768 0.99332 0.95529 0.90017 1.16848 0.76728 0.85728 0.80350 1.90700 1.61051 1.58964 1.32328 1.22400 1.31045 0.99902 1.00580 1.83342 1.63172 1.06683 1.19736 1.25466 1.05132 1.03257 0.99663 1.21573 1.04428 0.97751 0.96684 1.17888 0.89121 0.88963 0.93855 1.19772 1.32294 0.98943 0.88403 0.86073 1.26483 0.91771 1.01303 0.95050 1.69561 1.29142 1.39321 1.01730 0.86438 0.81145 0.80651 0.78115 1.18940 1.21032 1.16679 0.88317 0.92155 0.92005 0.91364 0.90012 0.90268 0.92944 0.92666 0.92962 0.93085 0.91308 0.92782 0.92946 0.89194 0.91282 0.84297 0.85715 0.89742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -4.96 10.37 -39.25 -0.41 -5.36 16 3 C 0.45 7.37 6.95 36.01 0.25 7.62 16 4 O -0.50 -9.36 14.36 -18.75 -0.27 -9.63 16 5 C 0.16 2.60 2.41 -69.08 -0.17 2.43 16 6 H 0.14 2.50 5.11 -51.93 -0.27 2.23 16 7 C -0.11 -1.48 4.08 -26.73 -0.11 -1.59 16 8 C -0.09 -1.24 2.86 -90.62 -0.26 -1.50 16 9 C -0.14 -1.54 9.19 37.16 0.34 -1.19 16 10 C -0.15 -2.10 8.95 37.16 0.33 -1.77 16 11 N -0.61 -11.77 1.91 -176.96 -0.34 -12.11 16 12 C 0.08 1.34 7.22 59.85 0.43 1.77 16 13 C 0.60 14.34 7.60 -13.05 -0.10 14.24 16 14 O -0.55 -14.55 13.75 5.14 0.07 -14.48 16 15 C -0.42 -10.17 6.25 -35.89 -0.22 -10.39 16 16 S 0.01 0.24 17.99 -107.50 -1.93 -1.69 16 17 C -0.20 -4.02 11.07 28.86 0.32 -3.70 16 18 C -0.17 -3.88 7.60 -39.12 -0.30 -4.18 16 19 C 0.11 2.88 5.19 -106.21 -0.55 2.33 16 20 C -0.36 -10.01 8.97 -37.93 -0.34 -10.35 16 21 H 0.12 3.70 6.42 -52.49 -0.34 3.36 16 22 C 0.08 1.99 5.50 -17.28 -0.10 1.89 16 23 N -0.77 -20.06 13.92 55.57 0.77 -19.29 16 24 Si 0.91 19.78 24.59 -169.99 -4.18 15.60 16 25 H -0.26 -5.32 6.35 56.52 0.36 -4.96 16 26 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 27 H -0.24 -5.50 6.94 56.52 0.39 -5.11 16 28 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.59 8.13 -51.93 -0.42 0.17 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.07 0.83 7.51 -51.93 -0.39 0.44 16 32 H 0.08 0.92 7.99 -51.93 -0.42 0.50 16 33 H 0.08 1.29 7.62 -51.93 -0.40 0.89 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.07 1.14 6.31 -51.93 -0.33 0.81 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.05 0.81 7.51 -51.93 -0.39 0.42 16 41 H 0.09 1.68 5.06 -26.80 -0.14 1.54 16 42 H 0.07 1.08 6.45 -51.93 -0.33 0.74 16 43 H 0.14 2.28 8.06 -52.48 -0.42 1.86 16 44 H 0.13 2.70 4.60 -52.49 -0.24 2.46 16 45 H 0.29 6.72 8.29 -40.82 -0.34 6.38 16 LS Contribution 367.75 15.07 5.54 5.54 Total: -1.00 -30.42 367.75 -6.36 -36.79 By element: Atomic # 1 Polarization: 13.81 SS G_CDS: -6.22 Total: 7.59 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: 0.60 Total: -2.96 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.44 Total: -31.39 kcal Atomic # 8 Polarization: -28.87 SS G_CDS: -0.61 Total: -29.47 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -4.18 Total: 15.60 kcal Atomic # 16 Polarization: 0.24 SS G_CDS: -1.93 Total: -1.69 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.42 -6.36 -36.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875759168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.034 kcal (2) G-P(sol) polarization free energy of solvation -30.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.789 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds