Wall clock time and date at job start Sat Apr 11 2020 05:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34226 * 116.99841 * 2 1 4 4 O 1.20831 * 120.00323 * 359.97438 * 3 2 1 5 5 C 1.50706 * 120.00058 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.46897 * 60.00163 * 5 3 2 7 7 C 1.52998 * 109.46958 * 299.99858 * 5 3 2 8 8 C 1.52997 * 109.46946 * 175.00070 * 7 5 3 9 9 C 1.53007 * 109.47012 * 174.99836 * 8 7 5 10 10 C 1.52997 * 109.47251 * 294.99972 * 8 7 5 11 11 N 1.46495 * 109.46983 * 179.97438 * 5 3 2 12 12 C 1.46503 * 119.99838 * 60.00113 * 11 5 3 13 13 C 1.34779 * 120.00432 * 239.99565 * 11 5 3 14 14 O 1.21757 * 119.99488 * 5.36545 * 13 11 5 15 15 C 1.46238 * 120.00567 * 185.35961 * 13 11 5 16 16 S 1.75669 * 125.22309 * 8.03370 * 15 13 11 17 17 C 1.75476 * 92.08662 * 179.97438 * 16 15 13 18 18 C 1.32760 * 111.36686 * 0.02562 * 17 16 15 19 19 C 1.39539 * 125.23142 * 187.73129 * 15 13 11 20 20 C 1.40545 * 123.71238 * 359.97438 * 19 15 13 21 21 H 1.08000 * 119.99726 * 329.72066 * 20 19 15 22 22 C 1.40308 * 120.00068 * 149.71707 * 20 19 15 23 23 N 1.30633 * 120.00012 * 167.95441 * 22 20 19 24 24 Si 1.86799 * 119.99966 * 347.96430 * 22 20 19 25 25 H 1.48497 * 109.47589 * 86.31920 * 24 22 20 26 26 H 1.48496 * 109.47107 * 206.32781 * 24 22 20 27 27 H 1.48504 * 109.47013 * 326.31883 * 24 22 20 28 28 H 1.09002 * 109.47110 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.47141 * 299.99871 * 1 2 3 30 30 H 1.08995 * 109.47929 * 60.00156 * 1 2 3 31 31 H 1.09005 * 109.47088 * 295.00264 * 7 5 3 32 32 H 1.09000 * 109.47394 * 54.99842 * 7 5 3 33 33 H 1.08997 * 109.47253 * 55.00341 * 8 7 5 34 34 H 1.08997 * 109.46699 * 60.00166 * 9 8 7 35 35 H 1.08997 * 109.47021 * 179.97438 * 9 8 7 36 36 H 1.08994 * 109.46862 * 300.00088 * 9 8 7 37 37 H 1.09006 * 109.46889 * 299.99925 * 10 8 7 38 38 H 1.09000 * 109.47422 * 59.99972 * 10 8 7 39 39 H 1.08997 * 109.47458 * 180.02562 * 10 8 7 40 40 H 1.09004 * 109.46972 * 95.56782 * 12 11 5 41 41 H 1.09004 * 109.46756 * 215.56436 * 12 11 5 42 42 H 1.08993 * 109.47672 * 335.56424 * 12 11 5 43 43 H 1.08003 * 124.31496 * 179.97438 * 17 16 15 44 44 H 1.07997 * 122.78703 * 179.97438 * 18 17 16 45 45 H 0.97000 * 119.99923 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9556 0.7810 -0.8909 7 6 4.1138 0.5811 1.2483 8 6 5.6423 0.5514 1.1864 9 6 6.1942 -0.0291 2.4901 10 6 6.0882 -0.3203 0.0108 11 7 3.9816 2.6798 -0.0011 12 6 3.5813 3.5623 1.0977 13 6 4.7320 3.1604 -1.0122 14 8 4.9828 2.4552 -1.9726 15 6 5.2448 4.5288 -0.9560 16 16 5.1399 5.5936 0.4372 17 6 5.9634 6.8902 -0.4113 18 6 6.2849 6.5312 -1.6484 19 6 5.8977 5.1872 -1.9987 20 6 6.1477 4.6054 -3.2535 21 1 6.2994 3.5391 -3.3336 22 6 6.2001 5.4098 -4.4018 23 7 6.6598 4.9198 -5.5221 24 14 5.6128 7.1815 -4.3287 25 1 6.7256 8.0536 -3.8744 26 1 5.1664 7.6111 -5.6783 27 1 4.4793 7.2883 -3.3752 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3635 0.5138 -0.8899 31 1 3.7967 1.1280 2.1363 32 1 3.7321 -0.4388 1.2942 33 1 6.0202 1.5647 1.0513 34 1 5.8163 -1.0425 2.6252 35 1 7.2831 -0.0507 2.4458 36 1 5.8765 0.5919 3.3275 37 1 5.7102 -1.3338 0.1461 38 1 5.6950 0.0932 -0.9179 39 1 7.1771 -0.3419 -0.0330 40 1 4.3801 3.6059 1.8381 41 1 3.3910 4.5628 0.7091 42 1 2.6751 3.1749 1.5632 43 1 6.1803 7.8573 0.0178 44 1 6.7976 7.1896 -2.3339 45 1 6.6957 5.4758 -6.3162 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875759168.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:32 Heat of formation + Delta-G solvation = -115.226868 kcal Electronic energy + Delta-G solvation = -28666.105014 eV Core-core repulsion = 24774.658736 eV Total energy + Delta-G solvation = -3891.446278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.98829 -40.40436 -38.44389 -37.57734 -37.46726 -35.65194 -35.17233 -32.14995 -30.78111 -28.69568 -28.31561 -28.05840 -27.64824 -25.49372 -23.79318 -22.68944 -21.45053 -20.77326 -20.37631 -19.19493 -18.46748 -18.13550 -17.85971 -17.45486 -17.29540 -16.54944 -16.29145 -15.79947 -15.61590 -15.35127 -15.03629 -14.96410 -14.61790 -14.44422 -14.05835 -13.97912 -13.95249 -13.76081 -13.54255 -13.29166 -13.11703 -13.03163 -12.91493 -12.77831 -12.59589 -12.50975 -12.16377 -12.07187 -11.85972 -11.84180 -11.62894 -11.54500 -11.38273 -11.21428 -10.99930 -10.49554 -9.73886 -9.42383 -9.02618 -8.96518 -6.50863 0.10596 1.01292 1.16071 1.25807 1.32199 1.39532 1.43649 1.61079 1.72979 2.04949 2.22493 2.46537 3.14697 3.50398 3.78757 3.88829 4.04676 4.11558 4.21183 4.26116 4.28660 4.30029 4.37286 4.50866 4.61026 4.66622 4.70807 4.74900 4.78687 4.82044 4.85219 4.93225 5.01214 5.04804 5.10471 5.22311 5.23963 5.32711 5.34808 5.45740 5.50527 5.60815 5.80146 6.21225 6.44926 6.51996 6.61215 6.75576 7.56323 8.04338 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.012140 B = 0.004197 C = 0.004038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.918707 B = 6669.415853 C = 6932.464602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.356 6.356 3 C 0.455 3.545 4 O -0.524 6.524 5 C 0.150 3.850 6 H 0.115 0.885 7 C -0.103 4.103 8 C -0.091 4.091 9 C -0.135 4.135 10 C -0.149 4.149 11 N -0.606 5.606 12 C 0.078 3.922 13 C 0.595 3.405 14 O -0.590 6.590 15 C -0.451 4.451 16 S 0.093 5.907 17 C -0.184 4.184 18 C -0.206 4.206 19 C 0.101 3.899 20 C -0.415 4.415 21 H 0.066 0.934 22 C 0.041 3.959 23 N -0.823 5.823 24 Si 0.971 3.029 25 H -0.232 1.232 26 H -0.271 1.271 27 H -0.256 1.256 28 H 0.138 0.862 29 H 0.069 0.931 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.108 0.892 33 H 0.044 0.956 34 H 0.072 0.928 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.030 0.970 39 H 0.049 0.951 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.089 0.911 43 H 0.187 0.813 44 H 0.135 0.865 45 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.809 -4.928 15.971 18.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.271 6.271 3 C 0.297 3.703 4 O -0.413 6.413 5 C 0.044 3.956 6 H 0.133 0.867 7 C -0.141 4.141 8 C -0.110 4.110 9 C -0.192 4.192 10 C -0.206 4.206 11 N -0.340 5.340 12 C -0.066 4.066 13 C 0.393 3.607 14 O -0.475 6.475 15 C -0.569 4.569 16 S 0.353 5.647 17 C -0.318 4.318 18 C -0.239 4.239 19 C 0.089 3.911 20 C -0.446 4.446 21 H 0.084 0.916 22 C -0.178 4.178 23 N -0.447 5.447 24 Si 0.792 3.208 25 H -0.157 1.157 26 H -0.197 1.197 27 H -0.180 1.180 28 H 0.156 0.844 29 H 0.088 0.912 30 H 0.070 0.930 31 H 0.104 0.896 32 H 0.126 0.874 33 H 0.063 0.937 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.068 0.932 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.107 0.893 43 H 0.205 0.795 44 H 0.152 0.848 45 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.415 -5.175 16.647 18.944 hybrid contribution 0.333 0.733 -2.424 2.555 sum -7.081 -4.442 14.223 16.497 Atomic orbital electron populations 1.23588 0.74615 1.05937 1.02418 1.86501 1.25120 1.31948 1.83558 1.24457 0.92475 0.81772 0.71588 1.90640 1.67414 1.37244 1.45975 1.20679 0.86065 0.84550 1.04327 0.86711 1.21952 0.96035 1.01777 0.94359 1.20990 0.94175 0.99130 0.96674 1.21741 1.00740 1.01562 0.95178 1.21882 1.00949 1.00340 0.97477 1.47254 1.53279 1.09303 1.24150 1.21893 1.00953 0.94357 0.89404 1.17114 0.77081 0.85768 0.80725 1.90686 1.62437 1.60111 1.34252 1.23065 1.29806 1.01020 1.03046 1.82921 1.61381 1.04372 1.16061 1.26097 1.02161 1.05044 0.98476 1.21493 1.07170 0.96770 0.98437 1.18218 0.88491 0.91037 0.93319 1.19523 1.37333 0.96818 0.90946 0.91585 1.27239 0.91276 1.05285 0.94007 1.69596 1.31302 1.41220 1.02625 0.85545 0.80943 0.76000 0.78338 1.15655 1.19699 1.18029 0.84430 0.91242 0.92984 0.89558 0.87393 0.93704 0.90951 0.92779 0.91752 0.90437 0.95131 0.93211 0.90808 0.90592 0.89296 0.79536 0.84785 0.88752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 10.56 113.37 1.20 1.70 16 2 O -0.36 -9.15 10.37 -51.38 -0.53 -9.68 16 3 C 0.45 14.59 6.95 71.24 0.50 15.09 16 4 O -0.52 -19.43 14.36 21.95 0.32 -19.11 16 5 C 0.15 4.99 2.41 44.25 0.11 5.09 16 6 H 0.12 4.43 5.11 -2.39 -0.01 4.42 16 7 C -0.10 -2.46 4.08 30.59 0.12 -2.34 16 8 C -0.09 -2.36 2.86 -10.79 -0.03 -2.39 16 9 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16 10 C -0.15 -4.24 8.95 71.98 0.64 -3.60 16 11 N -0.61 -23.58 1.91 -831.97 -1.59 -25.17 16 12 C 0.08 2.50 7.22 127.77 0.92 3.42 16 13 C 0.60 29.70 7.60 86.32 0.66 30.35 16 14 O -0.59 -34.26 13.75 -4.53 -0.06 -34.32 16 15 C -0.45 -22.29 6.25 24.66 0.15 -22.13 16 16 S 0.09 3.41 17.99 -56.49 -1.02 2.40 16 17 C -0.18 -6.69 11.07 66.64 0.74 -5.96 16 18 C -0.21 -9.10 7.60 22.60 0.17 -8.92 16 19 C 0.10 5.35 5.19 -20.89 -0.11 5.24 16 20 C -0.41 -24.76 8.97 23.34 0.21 -24.55 16 21 H 0.07 4.54 6.42 -2.91 -0.02 4.52 16 22 C 0.04 2.20 5.50 85.37 0.47 2.67 16 23 N -0.82 -45.66 13.92 21.89 0.30 -45.35 16 24 Si 0.97 41.35 24.59 68.60 1.69 43.04 16 25 H -0.23 -8.65 6.35 99.48 0.63 -8.02 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 H -0.26 -11.32 6.94 99.48 0.69 -10.63 16 28 H 0.14 1.47 8.14 -2.39 -0.02 1.46 16 29 H 0.07 1.19 8.13 -2.39 -0.02 1.17 16 30 H 0.05 1.08 8.13 -2.39 -0.02 1.06 16 31 H 0.09 1.79 7.51 -2.38 -0.02 1.77 16 32 H 0.11 2.07 7.99 -2.39 -0.02 2.05 16 33 H 0.04 1.47 7.62 -2.39 -0.02 1.45 16 34 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 35 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.08 1.74 8.14 -2.38 -0.02 1.72 16 38 H 0.03 1.09 6.31 -2.39 -0.02 1.08 16 39 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.07 2.06 7.51 -2.39 -0.02 2.04 16 41 H 0.08 2.68 5.06 -18.36 -0.09 2.59 16 42 H 0.09 2.54 6.45 -2.39 -0.02 2.53 16 43 H 0.19 5.01 8.06 -2.91 -0.02 4.99 16 44 H 0.13 5.58 4.60 -2.91 -0.01 5.56 16 45 H 0.30 14.70 8.29 -92.71 -0.77 13.93 16 Total: -1.00 -74.63 367.75 6.36 -68.27 By element: Atomic # 1 Polarization: 27.28 SS G_CDS: 0.84 Total: 28.12 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: 6.41 Total: -8.19 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.28 Total: -70.52 kcal Atomic # 8 Polarization: -62.84 SS G_CDS: -0.28 Total: -63.12 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 1.69 Total: 43.04 kcal Atomic # 16 Polarization: 3.41 SS G_CDS: -1.02 Total: 2.40 kcal Total: -74.63 6.36 -68.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875759168.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.958 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds