Wall clock time and date at job start Sat Apr 11 2020 05:38:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 109.70923 * 2 1 4 4 C 1.53301 * 109.68073 * 239.46769 * 2 1 3 5 5 O 1.42965 * 109.21779 * 292.57614 * 4 2 1 6 6 C 1.42967 * 114.16701 * 297.41823 * 5 4 2 7 7 C 1.52876 * 109.29743 * 62.45170 * 6 5 4 8 8 N 1.47149 * 108.60885 * 307.93450 * 7 6 5 9 9 S 1.65601 * 120.98362 * 230.50049 * 8 7 6 10 10 O 1.42090 * 106.40272 * 148.81278 * 9 8 7 11 11 O 1.42099 * 106.40145 * 15.88925 * 9 8 7 12 12 C 1.76201 * 107.21858 * 262.35336 * 9 8 7 13 13 C 1.38236 * 119.99861 * 89.99594 * 12 9 8 14 14 C 1.38240 * 119.99659 * 179.97438 * 13 12 9 15 15 C 1.38235 * 120.00279 * 0.02562 * 14 13 12 16 16 C 1.50695 * 119.99989 * 179.70092 * 15 14 13 17 17 C 1.50699 * 109.47475 * 89.99897 * 16 15 14 18 18 H 1.08003 * 119.99403 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00121 * 180.02562 * 17 16 15 20 20 N 1.31502 * 120.00064 * 359.97438 * 19 17 16 21 21 Si 1.86807 * 119.99673 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47034 * 89.99756 * 21 19 17 23 23 H 1.48505 * 109.46871 * 209.99757 * 21 19 17 24 24 H 1.48499 * 109.47321 * 329.99671 * 21 19 17 25 25 C 1.38232 * 119.99704 * 359.97129 * 15 14 13 26 26 C 1.38234 * 120.00367 * 0.02876 * 25 15 14 27 27 H 1.09000 * 109.47314 * 299.46298 * 1 2 3 28 28 H 1.09000 * 109.47341 * 59.46122 * 1 2 3 29 29 H 1.09003 * 109.47217 * 179.46477 * 1 2 3 30 30 H 1.09003 * 109.46876 * 186.62765 * 3 2 1 31 31 H 1.08991 * 109.47031 * 306.62548 * 3 2 1 32 32 H 1.08997 * 109.46745 * 66.62802 * 3 2 1 33 33 H 1.08996 * 109.51118 * 52.49879 * 4 2 1 34 34 H 1.09004 * 109.51115 * 172.65547 * 4 2 1 35 35 H 1.09005 * 109.50809 * 182.50777 * 6 5 4 36 36 H 1.08994 * 109.51092 * 302.66021 * 6 5 4 37 37 H 1.08997 * 109.61956 * 188.11083 * 7 6 5 38 38 H 1.09010 * 109.52318 * 67.69764 * 7 6 5 39 39 H 1.07993 * 120.00370 * 359.97438 * 13 12 9 40 40 H 1.08004 * 119.99673 * 179.97438 * 14 13 12 41 41 H 1.09003 * 109.46774 * 209.99742 * 16 15 14 42 42 H 1.09004 * 109.47038 * 329.99618 * 16 15 14 43 43 H 0.97008 * 120.00163 * 180.02562 * 20 19 17 44 44 H 1.08002 * 119.99955 * 179.97438 * 25 15 14 45 45 H 1.07999 * 120.00493 * 179.97438 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0460 1.4404 0.0000 4 6 2.0462 -0.7333 -1.2433 5 8 1.7167 -2.1208 -1.1420 6 6 2.3260 -2.7877 -0.0339 7 6 1.8291 -2.1604 1.2687 8 7 2.0256 -0.7040 1.1934 9 16 2.7882 0.1174 2.4124 10 8 3.4529 1.2150 1.8020 11 8 3.4595 -0.8596 3.1960 12 6 1.5344 0.8052 3.4418 13 6 1.0457 0.0812 4.5132 14 6 0.0624 0.6210 5.3212 15 6 -0.4325 1.8845 5.0574 16 6 -1.5091 2.4701 5.9342 17 6 -0.8740 3.2308 7.0696 18 1 0.2018 3.2843 7.1485 19 6 -1.6663 3.8574 8.0080 20 7 -2.9761 3.7917 7.9120 21 14 -0.8788 4.7996 9.4158 22 1 -0.6715 6.2131 9.0105 23 1 -1.7691 4.7506 10.6033 24 1 0.4300 4.1841 9.7526 25 6 0.0563 2.6084 3.9860 26 6 1.0396 2.0687 3.1781 27 1 -0.3634 0.5055 0.8947 28 1 -0.3634 0.5222 -0.8851 29 1 -0.3634 -1.0276 -0.0096 30 1 3.1295 1.4382 -0.1186 31 1 1.5913 1.9892 -0.8247 32 1 1.7847 1.9199 0.9433 33 1 1.5799 -0.3124 -2.1341 34 1 3.1283 -0.6200 -1.3097 35 1 2.0610 -3.8448 -0.0548 36 1 3.4090 -2.6818 -0.0960 37 1 2.3946 -2.5642 2.1084 38 1 0.7696 -2.3816 1.3986 39 1 1.4320 -0.9061 4.7191 40 1 -0.3197 0.0552 6.1580 41 1 -2.1290 3.1465 5.3456 42 1 -2.1275 1.6672 6.3357 43 1 -3.5336 4.2329 8.5721 44 1 -0.3306 3.5954 3.7797 45 1 1.4212 2.6341 2.3408 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000884970405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:38:44 Heat of formation + Delta-G solvation = -102.689088 kcal Electronic energy + Delta-G solvation = -28504.859544 eV Core-core repulsion = 24613.956945 eV Total energy + Delta-G solvation = -3890.902599 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.134 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.78093 -40.27254 -38.68329 -37.07212 -36.50871 -35.61980 -34.06519 -33.34675 -32.01797 -29.38148 -29.28167 -28.26662 -27.11379 -25.59929 -23.85605 -23.76452 -22.50447 -21.67437 -19.84392 -18.94434 -18.57690 -18.19103 -17.68758 -16.89028 -16.83980 -16.41531 -16.31936 -16.07137 -16.02910 -15.73640 -15.44399 -14.92220 -14.64249 -14.59650 -14.34931 -14.00211 -13.90121 -13.53132 -13.43446 -13.41060 -13.31039 -12.96194 -12.94014 -12.74453 -12.69611 -12.63070 -12.37126 -12.25140 -12.14112 -12.01483 -11.84728 -11.69151 -11.43204 -11.26427 -10.98500 -10.67002 -10.03600 -9.99539 -9.76745 -8.28672 -6.41642 -0.72338 -0.08943 0.36089 1.37395 1.37633 1.49170 1.81708 2.33315 2.54069 2.73912 2.92266 3.03989 3.18355 3.53311 3.69137 3.78858 3.90709 3.96236 4.06171 4.12420 4.20096 4.27868 4.40428 4.43898 4.53860 4.63447 4.69332 4.73599 4.77891 4.78905 4.87628 4.91673 4.95792 5.00842 5.06897 5.16315 5.21712 5.23855 5.29357 5.36320 5.52871 5.59683 5.65264 5.83403 5.89326 6.07798 6.18374 6.70023 7.27601 8.81407 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.022866 B = 0.002934 C = 0.002879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1224.257222 B = 9540.521866 C = 9723.508362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.142 3.858 3 C -0.183 4.183 4 C 0.062 3.938 5 O -0.386 6.386 6 C 0.050 3.950 7 C 0.072 3.928 8 N -0.988 5.988 9 S 2.711 3.289 10 O -0.968 6.968 11 O -0.984 6.984 12 C -0.700 4.700 13 C -0.021 4.021 14 C -0.154 4.154 15 C -0.003 4.003 16 C 0.049 3.951 17 C -0.535 4.535 18 H 0.053 0.947 19 C 0.010 3.990 20 N -0.925 5.925 21 Si 0.964 3.036 22 H -0.271 1.271 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.153 4.153 26 C -0.021 4.021 27 H 0.048 0.952 28 H 0.086 0.914 29 H 0.065 0.935 30 H 0.086 0.914 31 H 0.096 0.904 32 H 0.061 0.939 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.130 0.870 36 H 0.058 0.942 37 H 0.107 0.893 38 H 0.087 0.913 39 H 0.152 0.848 40 H 0.129 0.871 41 H 0.014 0.986 42 H 0.013 0.987 43 H 0.268 0.732 44 H 0.131 0.869 45 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.552 -11.691 -20.095 25.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.056 3.944 3 C -0.241 4.241 4 C -0.016 4.016 5 O -0.304 6.304 6 C -0.028 4.028 7 C -0.052 4.052 8 N -0.828 5.828 9 S 2.805 3.195 10 O -0.958 6.958 11 O -0.975 6.975 12 C -0.787 4.787 13 C -0.040 4.040 14 C -0.173 4.173 15 C -0.003 4.003 16 C 0.012 3.988 17 C -0.573 4.573 18 H 0.072 0.928 19 C -0.189 4.189 20 N -0.564 5.564 21 Si 0.789 3.211 22 H -0.196 1.196 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.172 4.172 26 C -0.040 4.040 27 H 0.067 0.933 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.105 0.895 31 H 0.115 0.885 32 H 0.080 0.920 33 H 0.144 0.856 34 H 0.079 0.921 35 H 0.148 0.852 36 H 0.076 0.924 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.170 0.830 40 H 0.147 0.853 41 H 0.032 0.968 42 H 0.031 0.969 43 H 0.077 0.923 44 H 0.149 0.851 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 10.174 -11.662 -19.994 25.284 hybrid contribution -0.744 1.018 1.802 2.199 sum 9.430 -10.644 -18.192 23.091 Atomic orbital electron populations 1.22110 0.93109 1.03099 1.02911 1.21300 0.95478 0.92609 0.85061 1.22824 1.03886 0.93215 1.04200 1.23106 1.00298 0.81246 0.96964 1.87938 1.72306 1.22196 1.47962 1.22994 0.97427 0.98030 0.84332 1.22344 1.03853 0.77968 1.01058 1.57839 1.76664 1.16540 1.31774 1.01324 0.73449 0.72656 0.72096 1.93643 1.73021 1.54157 1.74974 1.93493 1.72062 1.61340 1.70565 1.30863 1.24677 1.07049 1.16103 1.20981 0.92490 0.99138 0.91376 1.21297 0.99046 0.96049 1.00904 1.20814 0.94049 0.93122 0.92326 1.18257 0.92080 0.95228 0.93235 1.21286 0.93049 1.33084 1.09871 0.92847 1.25861 0.95298 0.97128 1.00599 1.70050 1.04714 1.44508 1.37134 0.85457 0.78428 0.78967 0.78295 1.19589 1.20276 1.19276 1.21305 0.99062 1.00747 0.96057 1.21121 0.92496 0.92694 0.97712 0.93302 0.89487 0.91590 0.89485 0.88508 0.92029 0.85583 0.92125 0.85190 0.92363 0.87472 0.89458 0.83032 0.85293 0.96790 0.96899 0.92340 0.85138 0.82498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.52 8.54 71.98 0.61 -1.91 16 2 C 0.14 2.42 1.06 3.58 0.00 2.42 16 3 C -0.18 -3.27 6.86 71.98 0.49 -2.78 16 4 C 0.06 0.87 5.66 72.08 0.41 1.28 16 5 O -0.39 -6.16 10.37 -148.98 -1.54 -7.70 16 6 C 0.05 0.66 6.97 71.94 0.50 1.16 16 7 C 0.07 1.16 6.31 86.21 0.54 1.70 16 8 N -0.99 -19.61 3.04 -468.78 -1.42 -21.03 16 9 S 2.71 71.22 5.31 -56.49 -0.30 70.92 16 10 O -0.97 -27.56 12.56 -128.00 -1.61 -29.17 16 11 O -0.98 -29.76 15.75 -128.00 -2.02 -31.78 16 12 C -0.70 -21.23 5.97 22.27 0.13 -21.09 16 13 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 14 C -0.15 -5.82 9.70 22.27 0.22 -5.60 16 15 C 0.00 -0.12 5.07 -19.87 -0.10 -0.22 16 16 C 0.05 2.51 5.10 29.10 0.15 2.66 16 17 C -0.54 -29.87 9.09 25.60 0.23 -29.64 16 18 H 0.05 2.97 7.74 -2.91 -0.02 2.94 16 19 C 0.01 0.57 5.46 84.66 0.46 1.03 16 20 N -0.92 -54.16 13.29 21.45 0.28 -53.88 16 21 Si 0.96 43.59 29.54 68.60 2.03 45.61 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 C -0.15 -5.69 9.70 22.27 0.22 -5.48 16 26 C -0.02 -0.67 8.93 22.27 0.20 -0.47 16 27 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 29 H 0.07 1.10 7.24 -2.39 -0.02 1.08 16 30 H 0.09 1.72 6.58 -2.39 -0.02 1.70 16 31 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.28 3.19 -2.39 -0.01 1.28 16 33 H 0.13 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.06 0.83 8.12 -2.38 -0.02 0.81 16 35 H 0.13 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 1.68 6.81 -2.39 -0.02 1.67 16 38 H 0.09 1.25 7.69 -2.38 -0.02 1.23 16 39 H 0.15 4.04 7.62 -2.91 -0.02 4.02 16 40 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 41 H 0.01 0.75 8.08 -2.39 -0.02 0.73 16 42 H 0.01 0.69 8.09 -2.38 -0.02 0.67 16 43 H 0.27 14.69 8.31 -92.70 -0.77 13.92 16 44 H 0.13 4.66 8.06 -2.91 -0.02 4.64 16 45 H 0.16 4.06 5.47 -2.91 -0.02 4.04 16 Total: -1.00 -69.23 365.01 0.70 -68.53 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: 0.99 Total: 15.87 kcal Atomic # 6 Polarization: -61.66 SS G_CDS: 4.28 Total: -57.38 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.14 Total: -74.91 kcal Atomic # 8 Polarization: -63.48 SS G_CDS: -5.17 Total: -68.65 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.61 kcal Atomic # 16 Polarization: 71.22 SS G_CDS: -0.30 Total: 70.92 kcal Total: -69.23 0.70 -68.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000884970405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.160 kcal (2) G-P(sol) polarization free energy of solvation -69.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds